Rroxscaffold_4G00324650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000689
Physical Location & Seq
Forward (+)
56202969 .. 56212590
9622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324650.1

Sequence Viewer

Length: 519 bp
ATGGCCGAACCCAAAATCTTGTCCCCTTTATCGAGTAAGCGAAGACTAGGCCCAACAAACTTCGAAGGATTGAGAATCCTAGGAAGCTTGCTGTTGTGTTCCTCCCGGCAGCTCCTTGTAGATAGAATAAGAGATTTGGACAAGAGACGAATTGGAAAGGATAGAAAACTAAGGGTGGATTTGGGAGAGATGAAGCATGGCGAGAAGAAGAATGCTAGAGAGCTTACTAGCATACCCCATTCGATCCTTTGCTTGGTTAGTAACATAGCTATTTATATGCAATTCCAGCAGACTAAAGGAATCTCGGTGGAAGATTTTGCGCGTGGAAGAAAGGAATGGAATGAAGATTGCTCTATAGGCTTGCTGGGTCGAACTTCCTTCTGCTGGCATACTGGGCTAAATCGCTACATTGTGGTTCTTCATGATATCCAGAGGCTTGGCAAGATGCGTGTGGCGTGGGAGCTAGAAAAACATGAGTTTCGAAGAAGAGATCTCGGCGGTGATGGCATATTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.84

Weight (kDa)

9.91

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AciI CCGC 1 cut(s) 498
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 253, 384
AluBI AGCT 5 cut(s) 87, 112, 223, 269, 463
AluI AGCT 5 cut(s) 87, 112, 223, 269, 463
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 238
AoxI GGCC 2 cut(s) 3, 49
ApeKI GCWGC 1 cut(s) 109
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 512
AsuII TTCGAA 2 cut(s) 63, 481
AvrII CCTAGG 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 497
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 5 cut(s) 47, 80, 216, 228, 464
BfmI CTRYAG 1 cut(s) 354
BglII AGATCT 1 cut(s) 490
BisI GCNGC 1 cut(s) 110
BlnI CCTAGG 1 cut(s) 79
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 49
Bpu14I TTCGAA 2 cut(s) 63, 481
BpuMI CCSGG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 384
Bse1I ACTGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 253, 384
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 2 cut(s) 5, 51
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 253, 384
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 5, 51
Bsp119I TTCGAA 2 cut(s) 63, 481
Bsp143I GATC 2 cut(s) 243, 490
BspACI CCGC 1 cut(s) 498
BspANI GGCC 2 cut(s) 5, 51
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 421
BspPI GGATC 1 cut(s) 238
BspT104I TTCGAA 2 cut(s) 63, 481
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 2 cut(s) 243, 490
BssT1I CCWWGG 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 481
BstBI TTCGAA 2 cut(s) 63, 481
BstC8I GCNNGC 3 cut(s) 89, 362, 386
BstDEI CTNAG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 2 cut(s) 246, 493
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 243, 490
BstMWI GCNNNNNNNGC 4 cut(s) 286, 357, 394, 504
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 437
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 2 cut(s) 5, 51
Cac8I GCNNGC 3 cut(s) 89, 362, 386
CciI TCATGA 1 cut(s) 421
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 50
CviAII CATG 3 cut(s) 197, 422, 473
DdeI CTNAG 1 cut(s) 170
DpnI GATC 2 cut(s) 245, 492
DpnII GATC 2 cut(s) 243, 490
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 79
Eco32I GATATC 1 cut(s) 427
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 3 cut(s) 200, 425, 476
FaqI GGGAC 1 cut(s) 7
FatI CATG 3 cut(s) 196, 421, 472
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 5 cut(s) 47, 80, 216, 228, 464
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 110
GsaI CCCAGC 1 cut(s) 368
HaeIII GGCC 2 cut(s) 5, 51
HapII CCGG 1 cut(s) 106
HhaI GCGC 1 cut(s) 322
Hin1II CATG 3 cut(s) 200, 425, 476
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 2 cut(s) 75, 300
HpaII CCGG 1 cut(s) 106
HphI GGTGA 1 cut(s) 512
Hpy188III TCNNGA 2 cut(s) 422, 430
HpyAV CCTTC 2 cut(s) 59, 388
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 4 cut(s) 286, 357, 394, 504
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 3 cut(s) 200, 425, 476
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 243, 490
LmnI GCTCC 2 cut(s) 117, 460
LpnPI CCDG 6 cut(s) 119, 299, 350, 370, 378, 443
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 435
MaeI CTAG 5 cut(s) 47, 80, 216, 228, 464
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 245, 492
MboI GATC 2 cut(s) 243, 490
MboII GAAGA 9 cut(s) 54, 217, 220, 323, 339, 356, 410, 495, 498
MflI RGATCY 1 cut(s) 490
MluCI AATT 2 cut(s) 150, 281
MnlI CCTC 2 cut(s) 112, 426
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 217
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 4 cut(s) 286, 357, 394, 504
NciI CCSGG 1 cut(s) 106
NdeII GATC 2 cut(s) 243, 490
NlaIII CATG 3 cut(s) 200, 425, 476
NmeAIII GCCGAG 1 cut(s) 474
NspV TTCGAA 2 cut(s) 63, 481
PagI TCATGA 1 cut(s) 421
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 75, 300
PkrI GCNGC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 490
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 2 cut(s) 243, 490
Sau96I GGNCC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 106
SetI ASST 5 cut(s) 89, 114, 225, 271, 465
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 1 cut(s) 354
SfuI TTCGAA 2 cut(s) 63, 481
Sse9I AATT 2 cut(s) 150, 281
SsiI CCGC 1 cut(s) 498
SspMI CTAG 5 cut(s) 47, 80, 216, 228, 464
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 79
TaqI TCGA 5 cut(s) 32, 63, 242, 370, 481
TasI AATT 2 cut(s) 150, 281
TfiI GAWTC 2 cut(s) 75, 300
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 206, 357, 410
XmaJI CCTAGG 1 cut(s) 79
XspI CTAG 5 cut(s) 47, 80, 216, 228, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.