Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Forward (+)

66424998 .. 66426501

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51822

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCATCCAGCAAAAATGTGGTGCTATTGTAGGATGGTTTACATGCCTATGTCATACTTATATGGAATAAGGTTTGTTGGCCCAATTACACCTCTCGTTCTTCAATTGAGGGAAGAACTTTTTATTCAACCTTACAATGAAATCAATTGGAAGAAAGTACGCCATCTATGTGCCAAAGAGGATATCTACTACCCTCATCCTTTGATACAGGATCTCCTTTGGGATAGCCTCTACATCTCCACAGAGCCTCTTCTTACTCGATGGCCCTTTAACAAGTTGATCAGAGAAAAGGCTCTTCAAGTGACGATGAAGCATATTCATTACGAAGATGAGAACAGCCGATACATTACCATAGGATGTGTGGAAAAGGTTTTAGGTATGCTTGCTTGTTGGGCTGAAGATCCAAATGAGGACTATTTCAAGAAGCATCTTGCAAGGATCCCGGATTATTTATGGGTTGCTGAAGATAGGATGAAGATGCAAAGTTTTGGCAGTCAGCAGTGGGACACTGGTTTTGCCATTCAAGCTTTGCTTGCTAGTAATCTCACAGATGAAATTGGGCCAACACTCGCTAGAAGACATGACTTCGATCATAAAAAAATCTCAGGTTTATTTAGAGCTCCAATCAAGTCACTGTCATGTCTTTTGTTCGAAATCACTGGAGTCTTCATGAAGAACTGCATGCTTCATTATGCAGCTTATAGAAATATATACCCACTCTGGGCTCTTGCAGAATACCGCAAGCGTGTTCCATTGCCTTCCCAGGCCAGAATTGTTCACCCTATTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

263

Amino Acids

31.18

Weight (kDa)

8.72

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	739
AclWI	GGATC	4 cut(s)	219, 395, 433, 446
AcuI	CTGAAG	2 cut(s)	417, 483
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	721
AgsI	TTSAA	5 cut(s)	104, 128, 299, 421, 524
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	3 cut(s)	527, 620, 698
AluI	AGCT	3 cut(s)	527, 620, 698
Alw21I	GWGCWC	1 cut(s)	622
AlwI	GGATC	4 cut(s)	219, 395, 433, 446
AoxI	GGCC	4 cut(s)	79, 263, 560, 765
ApeKI	GCWGC	1 cut(s)	695
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AspS9I	GGNCC	3 cut(s)	80, 264, 560
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	770
AsuII	TTCGAA	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	438
BanII	GRGCYC	2 cut(s)	622, 727
BbsI	GAAGAC	2 cut(s)	583, 658
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	1 cut(s)	707
BccI	CCATC	3 cut(s)	28, 171, 255
BciT130I	CCWGG	1 cut(s)	764
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	443
BfaI	CTAG	2 cut(s)	537, 573
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
Bme1390I	CCNGG	2 cut(s)	443, 764
BmgT120I	GGNCC	3 cut(s)	80, 264, 560
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	443, 764
BmsI	GCATC	3 cut(s)	13, 436, 468
BpiI	GAAGAC	2 cut(s)	583, 658
BpmI	CTGGAG	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	651
BpuMI	CCSGG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	762
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse1I	ACTGG	2 cut(s)	514, 664
Bse3DI	GCAATG	1 cut(s)	752
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	1 cut(s)	762
BseGI	GGATG	5 cut(s)	4, 39, 196, 362, 477
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	2 cut(s)	514, 664
BseXI	GCAGC	1 cut(s)	707
BshFI	GGCC	4 cut(s)	81, 265, 562, 767
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	4 cut(s)	81, 265, 562, 767
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	2 cut(s)	622, 727
Bsp143I	GATC	5 cut(s)	211, 279, 400, 438, 589
BspACI	CCGC	1 cut(s)	739
BspANI	GGCC	4 cut(s)	81, 265, 562, 767
BspCNI	CTCAG	1 cut(s)	617
BspHI	TCATGA	1 cut(s)	669
BspLI	GGNNCC	1 cut(s)	440
BspPI	GGATC	4 cut(s)	219, 395, 433, 446
BspQI	GCTCTTC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	752
BsrI	ACTGG	2 cut(s)	514, 664
BssECI	CCNNGG	1 cut(s)	762
BssMI	GATC	5 cut(s)	211, 279, 400, 438, 589
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	1 cut(s)	636
Bst6I	CTCTTC	2 cut(s)	255, 300
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	4 cut(s)	384, 534, 683, 743
BstDEI	CTNAG	1 cut(s)	604
BstF5I	GGATG	5 cut(s)	4, 39, 196, 362, 477
BstKTI	GATC	5 cut(s)	214, 282, 403, 441, 592
BstMBI	GATC	5 cut(s)	211, 279, 400, 438, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 524, 533
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	2 cut(s)	46, 685
BstSCI	CCNGG	2 cut(s)	441, 762
BstV1I	GCAGC	1 cut(s)	707
BstV2I	GAAGAC	2 cut(s)	583, 658
BstX2I	RGATCY	3 cut(s)	211, 400, 438
BstYI	RGATCY	3 cut(s)	211, 400, 438
BsuRI	GGCC	4 cut(s)	81, 265, 562, 767
BtsCI	GGATG	5 cut(s)	4, 39, 196, 362, 477
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	4 cut(s)	506, 507, 632, 657
Cac8I	GCNNGC	4 cut(s)	384, 534, 683, 743
CciI	TCATGA	1 cut(s)	669
Cfr13I	GGNCC	3 cut(s)	80, 264, 560
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	5 cut(s)	43, 581, 639, 670, 682
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	604
DpnI	GATC	5 cut(s)	213, 281, 402, 440, 591
DpnII	GATC	5 cut(s)	211, 279, 400, 438, 589
Eam1104I	CTCTTC	2 cut(s)	255, 300
EarI	CTCTTC	2 cut(s)	255, 300
Ecl136II	GAGCTC	1 cut(s)	620
Eco24I	GRGCYC	2 cut(s)	622, 727
Eco32I	GATATC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	620
Eco57I	CTGAAG	2 cut(s)	417, 483
EcoICRI	GAGCTC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	762
EcoRV	GATATC	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	622, 727
FaeI	CATG	5 cut(s)	46, 584, 642, 673, 685
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	5 cut(s)	42, 580, 638, 669, 681
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	4 cut(s)	46, 183, 369, 484
FriOI	GRGCYC	2 cut(s)	622, 727
Fsp4HI	GCNGC	1 cut(s)	696
FspBI	CTAG	2 cut(s)	537, 573
GluI	GCNGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	4 cut(s)	81, 265, 562, 767
HapII	CCGG	1 cut(s)	443
Hin1II	CATG	5 cut(s)	46, 584, 642, 673, 685
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	1 cut(s)	663
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	2 cut(s)	40, 778
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	2 cut(s)	421, 670
Hpy8I	GTNNAC	2 cut(s)	40, 778
HpyAV	CCTTC	1 cut(s)	768
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4V	TGCA	6 cut(s)	4, 434, 481, 681, 695, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 524, 533
HpyF3I	CTNAG	1 cut(s)	604
Hsp92II	CATG	5 cut(s)	46, 584, 642, 673, 685
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	211, 279, 400, 438, 589
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	625
Lsp1109I	GCAGC	1 cut(s)	707
LweI	GCATC	3 cut(s)	13, 436, 468
MaeI	CTAG	2 cut(s)	537, 573
MaeIII	GTNAC	2 cut(s)	301, 630
MalI	GATC	5 cut(s)	213, 281, 402, 440, 591
MboI	GATC	5 cut(s)	211, 279, 400, 438, 589
MfeI	CAATTG	2 cut(s)	104, 145
MflI	RGATCY	3 cut(s)	211, 400, 438
MhlI	GDGCHC	2 cut(s)	622, 727
MluCI	AATT	5 cut(s)	84, 104, 145, 555, 771
MlyI	GAGTC	1 cut(s)	672
MnlI	CCTC	7 cut(s)	102, 102, 172, 204, 239, 258, 403
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	3 cut(s)	47, 168, 637
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	443, 764
MunI	CAATTG	2 cut(s)	104, 145
MvaI	CCWGG	1 cut(s)	764
MwoI	GCNNNNNNNGC	3 cut(s)	392, 524, 533
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	5 cut(s)	211, 279, 400, 438, 589
NlaIII	CATG	5 cut(s)	46, 584, 642, 673, 685
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	2 cut(s)	301, 630
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	46, 685
NspV	TTCGAA	1 cut(s)	651
PaeI	GCATGC	1 cut(s)	685
PagI	TCATGA	1 cut(s)	669
PciSI	GCTCTTC	1 cut(s)	300
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	697
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
Psp124BI	GAGCTC	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	3 cut(s)	80, 264, 560
PsrI	GAACNNNNNNTAC	2 cut(s)	326, 358
PsuI	RGATCY	3 cut(s)	211, 400, 438
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	3 cut(s)	47, 168, 637
SacI	GAGCTC	1 cut(s)	622
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	5 cut(s)	211, 279, 400, 438, 589
Sau96I	GGNCC	3 cut(s)	80, 264, 560
SchI	GAGTC	1 cut(s)	672
ScrFI	CCNGG	2 cut(s)	443, 764
SduI	GDGCHC	2 cut(s)	622, 727
SetI	ASST	9 cut(s)	74, 94, 133, 372, 379, 529, 610, 622, 700
SfaNI	GCATC	3 cut(s)	13, 436, 468
SfuI	TTCGAA	1 cut(s)	651
SmiMI	CAYNNNNRTG	3 cut(s)	47, 168, 637
SphI	GCATGC	1 cut(s)	685
Sse9I	AATT	5 cut(s)	84, 104, 145, 555, 771
SsiI	CCGC	1 cut(s)	739
SspMI	CTAG	2 cut(s)	537, 573
SstI	GAGCTC	1 cut(s)	622
StyD4I	CCNGG	2 cut(s)	441, 762
TaaI	ACNGT	1 cut(s)	636
TaqI	TCGA	3 cut(s)	259, 588, 651
TasI	AATT	5 cut(s)	84, 104, 145, 555, 771
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	4 cut(s)	506, 514, 639, 664
TseFI	GTSAC	2 cut(s)	301, 630
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	2 cut(s)	301, 630
TspDTI	ATGAA	8 cut(s)	153, 308, 323, 488, 567, 658, 677, 686
TspRI	CASTG	4 cut(s)	506, 514, 639, 664
XceI	RCATGY	2 cut(s)	46, 685
XcmI	CCANNNNNNNNNTGG	2 cut(s)	15, 358
XspI	CTAG	2 cut(s)	537, 573
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.