Rh1CG014400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000689
Physical Location & Seq
Reverse (-)
2264022 .. 2280921
16900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG014400.1

Sequence Viewer

Length: 174 bp
ATGGACGGCGCTGTGACTACTCTGTCGTATGGGCTAAGCCCAACTTGGAAGCTTCTATTGGGCTGGAATCTGCCCTCATCAAATAGTGACCGCGGTGTTGATATCACTTACAGCTTCGGCCTAAATGGTGGCCGCAGTGTTGGCTTAACTATTAAGCAGCCAGTCTGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.14

Weight (kDa)

8.19

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccII CGCG 1 cut(s) 93
AciI CCGC 3 cut(s) 91, 93, 133
AcoI YGGCCR 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 2 cut(s) 52, 114
AluI AGCT 2 cut(s) 52, 114
AoxI GGCC 2 cut(s) 118, 130
ApeKI GCWGC 1 cut(s) 157
AspLEI GCGC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 12
BglI GCCNNNNNGGC 1 cut(s) 166
BisI GCNGC 2 cut(s) 133, 158
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 2 cut(s) 134, 159
Bpu1102I GCTNAGC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 120, 132
BsnI GGCC 2 cut(s) 120, 132
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 3 cut(s) 91, 93, 133
BspANI GGCC 2 cut(s) 120, 132
BspFNI CGCG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstMWI GCNNNNNNNGC 2 cut(s) 141, 166
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 169
BsuRI GGCC 2 cut(s) 120, 132
BtgI CCRYGG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
CfoI GCGC 1 cut(s) 11
Cfr42I CCGCGG 1 cut(s) 94
DdeI CTNAG 1 cut(s) 35
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 130
Eco32I GATATC 1 cut(s) 103
EcoRV GATATC 1 cut(s) 103
FaiI YATR 1 cut(s) 30
FalI AAGNNNNNCTT 2 cut(s) 28, 60
Fnu4HI GCNGC 2 cut(s) 133, 158
Fsp4HI GCNGC 2 cut(s) 133, 158
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 133, 158
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 120, 132
HhaI GCGC 1 cut(s) 11
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 166
HpyF3I CTNAG 1 cut(s) 35
HspAI GCGC 1 cut(s) 9
KspI CCGCGG 1 cut(s) 94
LpnPI CCDG 2 cut(s) 49, 151
Lsp1109I GCAGC 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 13, 86
MnlI CCTC 1 cut(s) 85
MseI TTAA 2 cut(s) 146, 153
MspA1I CMGCKG 1 cut(s) 93
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 141, 166
NmuCI GTSAC 2 cut(s) 13, 86
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 134, 159
SacII CCGCGG 1 cut(s) 94
SaqAI TTAA 2 cut(s) 146, 153
SatI GCNGC 2 cut(s) 133, 158
SetI ASST 2 cut(s) 54, 116
Sfr303I CCGCGG 1 cut(s) 94
SgeI CNNG 3 cut(s) 57, 76, 104
SgrBI CCGCGG 1 cut(s) 94
SsiI CCGC 3 cut(s) 91, 93, 133
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 146, 153
Tru9I TTAA 2 cut(s) 146, 153
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 2 cut(s) 13, 86
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 2 cut(s) 13, 86
TspRI CASTG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.