Rmu_sc0006758.1_g000013

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006758.1
OG0000689
Physical Location & Seq
Reverse (-)
41487 .. 46394
4908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006758.1_g000013.1.cds

Sequence Viewer

Length: 1029 bp
atgtggaagcttaggtttggagacgaaggtgcaaataatgacccttacttgttcagcacaaacaacttccatgggaggcaaacatgggagttcgacccggctgccggcacacctgaagagcgagcagaggtggaagaagttcggctaagtttttacaacaatcgtcaccgagtccaggcttgtagtgacctcctctgtcgaatgcaggtacttctgggagagaaaaagttcaaacaaaagattccccaagtaaaggtggaggatggtgaggactgtacatatgaaaaggccaccgctgcatttagaagggcaggtaccttctactctgccttacaatcacctcacggccattggcctgctgaaaatgccggtcccatgttttatattcctcccttggaggataactactatccccatggcaagtttcaatgtttgatgtgggattctctgaacatggtttatgagcctcttctttcttgctggcccttcaataagttgagagagaaggctcttcaagaaactattgaacacattcattatgaagatgaaaatagtcgatacataacaattggatgtggggaaaagccgttaatgatgcttgcttgctggattgaagatccgaatggaaaaccctttaagaagcatcttgcaagagttatagattacatatgggttgcagaagatggaataactacgcagagttttggtagccaggcatgggatgctagtctttctgttcaagctttgcttgctggaaatcacactgatgaacttggatctattagggataatccttctggtgacttcttatctcggttccgtcacatttctaaaggtggttggactttctctgaccgagatcatggatggcaagtgtctgattgtactgcagagtgtttgaagtgttgcctattgctttcaatgatgccgacgcaaatcgtgggtgaaccagttgaatatgagcgcctgtatgatgctgtcaatgtcatactttctctacaagtgaggactagtgtgaattatctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

342

Amino Acids

39.3

Weight (kDa)

5.34

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 196, 302
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 1 cut(s) 294
AclWI GGATC 2 cut(s) 611, 784
AcoI YGGCCR 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 4 cut(s) 210, 277, 316, 886
AfiI CCNNNNNNNGG 4 cut(s) 104, 175, 253, 718
AhlI ACTAGT 1 cut(s) 1010
AjnI CCWGG 2 cut(s) 174, 711
AluBI AGCT 2 cut(s) 10, 743
AluI AGCT 2 cut(s) 10, 743
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 611, 784
AoxI GGCC 4 cut(s) 288, 346, 353, 482
ApeKI GCWGC 2 cut(s) 101, 296
Asp700I GAANNNNTTC 3 cut(s) 138, 227, 531
Asp718I GGTACC 1 cut(s) 314
AspLEI GCGC 1 cut(s) 966
AspS9I GGNCC 2 cut(s) 371, 483
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 5 cut(s) 158, 278, 330, 812, 956
AvaII GGWCC 1 cut(s) 371
BanI GGYRCC 1 cut(s) 314
BarI GAAGNNNNNNTAC 2 cut(s) 298, 330
BbvI GCAGC 2 cut(s) 88, 283
BccI CCATC 3 cut(s) 257, 677, 861
BceAI ACGGC 2 cut(s) 361, 571
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 2 cut(s) 176, 713
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 15
BcuI ACTAGT 1 cut(s) 1010
BfaI CTAG 2 cut(s) 726, 1011
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 1 cut(s) 967
BfuAI ACCTGC 2 cut(s) 196, 302
BisI GCNGC 2 cut(s) 102, 297
BlsI GCNGC 2 cut(s) 103, 298
Bme1390I CCNGG 3 cut(s) 98, 176, 713
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 371, 483
BmiI GGNNCC 3 cut(s) 316, 373, 818
BmrFI CCNGG 3 cut(s) 98, 176, 713
BmsI GCATC 5 cut(s) 585, 652, 712, 915, 964
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 70, 393, 415
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 175, 253, 718
Bse118I RCCGGY 2 cut(s) 104, 368
Bse1I ACTGG 1 cut(s) 950
BseBI CCWGG 2 cut(s) 176, 713
BseDI CCNNGG 3 cut(s) 70, 393, 415
BseGI GGATG 4 cut(s) 268, 578, 727, 872
BseLI CCNNNNNNNGG 4 cut(s) 104, 175, 253, 718
BseNI ACTGG 1 cut(s) 950
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 88, 283
BshFI GGCC 4 cut(s) 290, 348, 355, 484
BshNI GGYRCC 1 cut(s) 314
BsiSI CCGG 3 cut(s) 98, 105, 369
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 4 cut(s) 104, 175, 253, 718
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 4 cut(s) 290, 348, 355, 484
Bsp1407I TGTACA 1 cut(s) 275
Bsp143I GATC 3 cut(s) 616, 776, 859
Bsp19I CCATGG 2 cut(s) 70, 415
BspACI CCGC 1 cut(s) 294
BspANI GGCC 4 cut(s) 290, 348, 355, 484
BspLI GGNNCC 3 cut(s) 316, 373, 818
BspMAI CTGCAG 1 cut(s) 892
BspMI ACCTGC 2 cut(s) 196, 302
BspPI GGATC 2 cut(s) 611, 784
BspQI GCTCTTC 2 cut(s) 111, 516
BspT107I GGYRCC 1 cut(s) 314
BsrFI RCCGGY 2 cut(s) 104, 368
BsrGI TGTACA 1 cut(s) 275
BsrI ACTGG 1 cut(s) 950
BssAI RCCGGY 2 cut(s) 104, 368
BssECI CCNNGG 3 cut(s) 70, 393, 415
BssMI GATC 3 cut(s) 616, 776, 859
BssT1I CCWWGG 3 cut(s) 70, 393, 415
Bst2UI CCWGG 2 cut(s) 176, 713
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 3 cut(s) 111, 474, 516
BstAPI GCANNNNNTGC 1 cut(s) 722
BstAUI TGTACA 1 cut(s) 275
BstC8I GCNNGC 7 cut(s) 106, 123, 357, 482, 600, 604, 750
BstDEI CTNAG 2 cut(s) 11, 146
BstDSI CCRYGG 2 cut(s) 70, 415
BstF5I GGATG 4 cut(s) 268, 578, 727, 872
BstH2I RGCGCY 1 cut(s) 967
BstHHI GCGC 1 cut(s) 966
BstKTI GATC 3 cut(s) 619, 779, 862
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 3 cut(s) 616, 776, 859
BstMWI GCNNNNNNNGC 4 cut(s) 296, 365, 722, 749
BstNI CCWGG 2 cut(s) 176, 713
BstSCI CCNGG 3 cut(s) 96, 174, 711
BstSFI CTRYAG 1 cut(s) 888
BstV1I GCAGC 2 cut(s) 88, 283
BstX2I RGATCY 2 cut(s) 616, 776
BstYI RGATCY 2 cut(s) 616, 776
BsuRI GGCC 4 cut(s) 290, 348, 355, 484
BtgI CCRYGG 2 cut(s) 70, 415
BtsCI GGATG 4 cut(s) 268, 578, 727, 872
BtsIMutI CAGTG 1 cut(s) 762
BveI ACCTGC 2 cut(s) 196, 302
Cac8I GCNNGC 7 cut(s) 106, 123, 357, 482, 600, 604, 750
CfoI GCGC 1 cut(s) 966
Cfr10I RCCGGY 2 cut(s) 104, 368
Cfr13I GGNCC 2 cut(s) 371, 483
CseI GACGC 1 cut(s) 940
Csp6I GTAC 4 cut(s) 209, 276, 315, 885
CviAII CATG 7 cut(s) 71, 84, 376, 416, 454, 717, 863
CviQI GTAC 4 cut(s) 209, 276, 315, 885
DdeI CTNAG 2 cut(s) 11, 146
DpnI GATC 3 cut(s) 618, 778, 861
DpnII GATC 3 cut(s) 616, 776, 859
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 3 cut(s) 111, 474, 516
EarI CTCTTC 3 cut(s) 111, 474, 516
Eco130I CCWWGG 3 cut(s) 70, 393, 415
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 135
EcoRII CCWGG 2 cut(s) 174, 711
EcoT14I CCWWGG 3 cut(s) 70, 393, 415
ErhI CCWWGG 3 cut(s) 70, 393, 415
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 7 cut(s) 74, 87, 379, 419, 457, 720, 866
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FaqI GGGAC 1 cut(s) 357
FatI CATG 7 cut(s) 70, 83, 375, 415, 453, 716, 862
FauNDI CATATG 2 cut(s) 280, 668
Fnu4HI GCNGC 2 cut(s) 102, 297
FokI GGATG 4 cut(s) 275, 585, 734, 879
Fsp4HI GCNGC 2 cut(s) 102, 297
FspBI CTAG 2 cut(s) 726, 1011
GlaI GCGC 1 cut(s) 965
GluI GCNGC 2 cut(s) 102, 297
HaeII RGCGCY 1 cut(s) 967
HaeIII GGCC 4 cut(s) 290, 348, 355, 484
HapII CCGG 3 cut(s) 98, 105, 369
HgaI GACGC 1 cut(s) 940
HhaI GCGC 1 cut(s) 966
Hin1II CATG 7 cut(s) 74, 87, 379, 419, 457, 720, 866
Hin6I GCGC 1 cut(s) 964
HinP1I GCGC 1 cut(s) 964
HindIII AAGCTT 2 cut(s) 8, 741
HinfI GANTC 3 cut(s) 171, 241, 443
HpaII CCGG 3 cut(s) 98, 105, 369
HphI GGTGA 5 cut(s) 158, 278, 330, 812, 956
Hpy166II GTNNAC 1 cut(s) 947
Hpy188I TCNGA 4 cut(s) 450, 621, 853, 880
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 1 cut(s) 947
Hpy99I CGWCG 1 cut(s) 934
HpyAV CCTTC 6 cut(s) 20, 300, 328, 496, 499, 804
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 6 cut(s) 32, 205, 299, 650, 677, 890
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 365, 722, 749
HpyF3I CTNAG 2 cut(s) 11, 146
Hsp92II CATG 7 cut(s) 74, 87, 379, 419, 457, 720, 866
HspAI GCGC 1 cut(s) 964
KpnI GGTACC 1 cut(s) 318
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 616, 776, 859
LguI GCTCTTC 2 cut(s) 111, 516
Lsp1109I GCAGC 2 cut(s) 88, 283
LweI GCATC 5 cut(s) 585, 652, 712, 915, 964
MaeI CTAG 2 cut(s) 726, 1011
MaeIII GTNAC 4 cut(s) 164, 185, 800, 821
MalI GATC 3 cut(s) 618, 778, 861
MboI GATC 3 cut(s) 616, 776, 859
MboII GAAGA 7 cut(s) 128, 146, 461, 503, 554, 626, 692
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 2 cut(s) 616, 776
MluCI AATT 2 cut(s) 567, 1018
MlyI GAGTC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 821
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 3 cut(s) 138, 227, 531
MseI TTAA 2 cut(s) 590, 636
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 3 cut(s) 98, 105, 369
MspR9I CCNGG 3 cut(s) 98, 176, 713
MunI CAATTG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 2 cut(s) 176, 713
MwoI GCNNNNNNNGC 4 cut(s) 296, 365, 722, 749
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 2 cut(s) 70, 415
NdeI CATATG 2 cut(s) 280, 668
NdeII GATC 3 cut(s) 616, 776, 859
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 7 cut(s) 74, 87, 379, 419, 457, 720, 866
NlaIV GGNNCC 3 cut(s) 316, 373, 818
NmuCI GTSAC 4 cut(s) 164, 185, 800, 821
PciSI GCTCTTC 2 cut(s) 111, 516
PctI GAATGC 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 3 cut(s) 138, 227, 531
PfeI GAWTC 2 cut(s) 241, 443
PkrI GCNGC 2 cut(s) 103, 298
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 174, 711
PspGI CCWGG 2 cut(s) 174, 711
PspN4I GGNNCC 3 cut(s) 316, 373, 818
PspPI GGNCC 2 cut(s) 371, 483
PstI CTGCAG 1 cut(s) 892
PsuI RGATCY 2 cut(s) 616, 776
RsaI GTAC 4 cut(s) 210, 277, 316, 886
RsaNI GTAC 4 cut(s) 209, 276, 315, 885
RseI CAYNNNNRTG 1 cut(s) 765
SapI GCTCTTC 2 cut(s) 111, 516
SaqAI TTAA 2 cut(s) 590, 636
SatI GCNGC 2 cut(s) 102, 297
Sau3AI GATC 3 cut(s) 616, 776, 859
Sau96I GGNCC 2 cut(s) 371, 483
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 3 cut(s) 98, 176, 713
SfaNI GCATC 5 cut(s) 585, 652, 712, 915, 964
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 765
SpeI ACTAGT 1 cut(s) 1010
Sse9I AATT 2 cut(s) 567, 1018
SsiI CCGC 1 cut(s) 294
SspMI CTAG 2 cut(s) 726, 1011
StyD4I CCNGG 3 cut(s) 96, 174, 711
StyI CCWWGG 3 cut(s) 70, 393, 415
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 3 cut(s) 93, 199, 556
TaqII GACCGA 1 cut(s) 870
TasI AATT 2 cut(s) 567, 1018
TatI WGTACW 2 cut(s) 275, 884
TfiI GAWTC 2 cut(s) 241, 443
Tru1I TTAA 2 cut(s) 590, 636
Tru9I TTAA 2 cut(s) 590, 636
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 4 cut(s) 164, 185, 800, 821
TseI GCWGC 2 cut(s) 101, 296
Tsp45I GTSAC 4 cut(s) 164, 185, 800, 821
TspDTI ATGAA 5 cut(s) 297, 524, 555, 561, 783
TspGWI ACGGA 1 cut(s) 809
TspRI CASTG 1 cut(s) 769
VpaK11BI GGWCC 1 cut(s) 371
XmnI GAANNNNTTC 3 cut(s) 138, 227, 531
XspI CTAG 2 cut(s) 726, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.