pycom09g08560

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
6576594 .. 6577003
410 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08560.2

Sequence Viewer

Length: 231 bp
ATGATGGGTTTAATTCATGCAGGACAGGCGGAAAGAGACCCCACACCTCTTCATCGTGCAGCAAAGTTGATAATCAATTCACAGATTGAAAATGGTGATTTTCCTCAGCAGGAAATCACTGGAGTGATCATGAAGAACTGCATGCTACATTATGCAGCTTATAGAAACATCCACCCACTGTGGGCTCTTGCAGAATACCGCAAGCGGTTTCCATTGCCTTCCAAAGCCTAA

Protein Analysis

77

Amino Acids

8.68

Weight (kDa)

9.36

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 199, 205
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 59, 155
AsuHPI GGTGA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 187
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 71, 167
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 30
BisI GCNGC 2 cut(s) 60, 156
BlsI GCNGC 2 cut(s) 61, 157
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 212
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 71, 167
BsgI GTGCAG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 3 cut(s) 29, 199, 205
BspCNI CTCAG 1 cut(s) 118
BspHI TCATGA 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 212
BsrI ACTGG 1 cut(s) 124
BssMI GATC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 143, 203
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 71, 167
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 117, 176
Cac8I GCNNGC 2 cut(s) 143, 203
CciI TCATGA 1 cut(s) 129
CviAII CATG 3 cut(s) 17, 130, 142
CviJI RGCY 3 cut(s) 158, 185, 227
CviKI_1 RGCY 3 cut(s) 158, 185, 227
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 187
FaeI CATG 3 cut(s) 20, 133, 145
FaiI YATR 5 cut(s) 18, 131, 143, 153, 162
FatI CATG 3 cut(s) 16, 129, 141
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 60, 156
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 60, 156
GluI GCNGC 2 cut(s) 60, 156
GsuI CTGGAG 1 cut(s) 141
Hin1II CATG 3 cut(s) 20, 133, 145
HphI GGTGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 5 cut(s) 20, 59, 141, 155, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 3 cut(s) 20, 133, 145
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 4 cut(s) 6, 11, 95, 105
Lsp1109I GCAGC 2 cut(s) 71, 167
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 2 cut(s) 41, 145
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 2 cut(s) 12, 76
MnlI CCTC 2 cut(s) 57, 114
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 1 cut(s) 126
NlaIII CATG 3 cut(s) 20, 133, 145
NspI RCATGY 1 cut(s) 145
OliI CACNNNNGTG 1 cut(s) 122
PaeI GCATGC 1 cut(s) 145
PagI TCATGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 61, 157
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 2 cut(s) 60, 156
Sau3AI GATC 1 cut(s) 126
SduI GDGCHC 1 cut(s) 187
SetI ASST 2 cut(s) 49, 160
SmiMI CAYNNNNRTG 1 cut(s) 122
SphI GCATGC 1 cut(s) 145
Sse9I AATT 2 cut(s) 12, 76
SsiI CCGC 3 cut(s) 29, 199, 205
TaaI ACNGT 1 cut(s) 180
TasI AATT 2 cut(s) 12, 76
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 2 cut(s) 124, 183
TseI GCWGC 2 cut(s) 59, 155
TspDTI ATGAA 3 cut(s) 5, 41, 146
TspRI CASTG 2 cut(s) 124, 183
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.