Rroxscaffold_3G00234260

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000689
Physical Location & Seq
Forward (+)
20578325 .. 20584885
6561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234260.1

Sequence Viewer

Length: 846 bp
ATGTTCCCGAGGCCTCCAACAGCATCCTCTACTTTGTGGGAACCGTCTCCGAAAGGTGCTTGCCTCGGTACCATAGATTTCAAGCCGCCTCAATTATCAACTGCGAGTTCATATAATCTTGCCTTGAAGATTAGTGTCTTGGATGTGGGGTTCAATGTGGTTTTTAGCAACTTAAAGGCCCAGGGAGTCATTGGTGAAGTGCCCGATATTATACTCGGATGTGTTAGTCGAGATGAGGCCGCCTTGGCCGTGGCTCAAAAGGTTTTCAAGGGTTTGTACGAGAATGCAACAAACCAGATTCATGTTGGCGCACATCTAGCAAGCTTGTCTTTACGCAGCTCACTAGTTGGTGCACTGGTGGTGTTTAGAAGGGGTGGAGAGGAGACGGATTTTTTGCAACAGCAAGGAATTCAAGTGCAAGTTATTCCAGCTGACCCCGATTTGACCTTGGTGGTATACATGGGTTTGTCGACTCTCATGTCCGCTTCCGACCCCGATCCGACCCATCATGTCCGCCACCAACAACTCCAACTTGTTGCGGTTGAGCGAGGGACCACACCTCAACAACGCATGCTGTTAAATCCGACAGAGTTCTTGGAGGACATTGTAATTGAGCATGAACATGTTGAGTGCACTTCATCCGTAATCCAGGCTTTAGTTCTGTTCAAGAAGCTACACCCTGGGCATAGGAAGAAAGAGATTGAACATTCCATCACCAATGCTGTACGCTACATTGAAAATATGCAAATGCCGGATGGTTCATGGGTATGGAGATTGGGGAGTTTGCTTCACATATGGTACCTGGTTTGCACTAGGAGGATTGGCAGCCGCCGGCAAGACTTTTAG

Protein Analysis

281

Amino Acids

31.19

Weight (kDa)

6.59

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 478
Acc65I GGTACC 2 cut(s) 68, 798
AccB1I GGYRCC 2 cut(s) 68, 798
AccI GTMKAC 2 cut(s) 456, 470
AciI CCGC 6 cut(s) 86, 240, 483, 514, 539, 829
AclWI GGATC 1 cut(s) 491
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 1 cut(s) 408
AfaI GTAC 4 cut(s) 70, 278, 726, 800
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 8 cut(s) 82, 127, 154, 268, 413, 667, 704, 737
AhlI ACTAGT 1 cut(s) 343
AjnI CCWGG 4 cut(s) 180, 648, 679, 801
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 4 cut(s) 324, 339, 431, 673
AluI AGCT 4 cut(s) 324, 339, 431, 673
Alw21I GWGCWC 2 cut(s) 355, 635
Alw26I GTCTC 2 cut(s) 51, 377
Alw44I GTGCAC 2 cut(s) 351, 631
AlwI GGATC 1 cut(s) 491
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 4 cut(s) 11, 177, 237, 246
ApaLI GTGCAC 2 cut(s) 351, 631
ApeKI GCWGC 2 cut(s) 336, 825
ApoI RAATTY 1 cut(s) 408
ArsI GACNNNNNNTTYG 2 cut(s) 376, 408
Asp718I GGTACC 2 cut(s) 68, 798
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 178, 552
AsuHPI GGTGA 2 cut(s) 206, 706
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 1 cut(s) 552
BaeGI GKGCMC 3 cut(s) 204, 355, 635
BanI GGYRCC 2 cut(s) 68, 798
Bbv12I GWGCWC 2 cut(s) 355, 635
BbvI GCAGC 2 cut(s) 348, 837
BccI CCATC 3 cut(s) 513, 719, 749
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 4 cut(s) 182, 650, 681, 803
BcoDI GTCTC 2 cut(s) 51, 377
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 3 cut(s) 317, 344, 813
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 5 cut(s) 86, 240, 337, 826, 829
BlsI GCNGC 5 cut(s) 87, 241, 338, 827, 830
Bme1390I CCNGG 4 cut(s) 182, 650, 681, 803
Bme18I GGWCC 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 178, 552
BmiI GGNNCC 4 cut(s) 42, 70, 553, 800
BmrFI CCNGG 4 cut(s) 182, 650, 681, 803
BmsI GCATC 1 cut(s) 32
BsaJI CCNNGG 9 cut(s) 8, 64, 180, 181, 243, 249, 447, 679, 680
Bse118I RCCGGY 1 cut(s) 831
Bse1I ACTGG 1 cut(s) 360
BseBI CCWGG 4 cut(s) 182, 650, 681, 803
BseDI CCNNGG 9 cut(s) 8, 64, 180, 181, 243, 249, 447, 679, 680
BseGI GGATG 5 cut(s) 23, 148, 224, 638, 760
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 3 cut(s) 204, 355, 635
BseXI GCAGC 2 cut(s) 348, 837
BshFI GGCC 4 cut(s) 13, 179, 239, 248
BshNI GGYRCC 2 cut(s) 68, 798
BsiHKAI GWGCWC 2 cut(s) 355, 635
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 2 cut(s) 752, 832
BslFI GGGAC 1 cut(s) 565
BsmAI GTCTC 2 cut(s) 51, 377
BsmBI CGTCTC 2 cut(s) 51, 377
BsmFI GGGAC 1 cut(s) 565
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 4 cut(s) 13, 179, 239, 248
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 3 cut(s) 204, 355, 635
Bsp143I GATC 1 cut(s) 496
BspACI CCGC 6 cut(s) 86, 240, 483, 514, 539, 829
BspANI GGCC 4 cut(s) 13, 179, 239, 248
BspLI GGNNCC 4 cut(s) 42, 70, 553, 800
BspPI GGATC 1 cut(s) 491
BspT107I GGYRCC 2 cut(s) 68, 798
BsrFI RCCGGY 1 cut(s) 831
BsrI ACTGG 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 831
BssECI CCNNGG 9 cut(s) 8, 64, 180, 181, 243, 249, 447, 679, 680
BssMI GATC 1 cut(s) 496
BssNAI GTATAC 1 cut(s) 457
BssT1I CCWWGG 2 cut(s) 243, 447
Bst1107I GTATAC 1 cut(s) 457
Bst2UI CCWGG 4 cut(s) 182, 650, 681, 803
Bst4CI ACNGT 1 cut(s) 45
BstC8I GCNNGC 4 cut(s) 61, 322, 572, 833
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 5 cut(s) 23, 148, 224, 638, 760
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 2 cut(s) 51, 377
BstMBI GATC 1 cut(s) 496
BstMWI GCNNNNNNNGC 2 cut(s) 245, 317
BstNI CCWGG 4 cut(s) 182, 650, 681, 803
BstNSI RCATGY 2 cut(s) 574, 626
BstSCI CCNGG 4 cut(s) 180, 648, 679, 801
BstSLI GKGCMC 3 cut(s) 204, 355, 635
BstV1I GCAGC 2 cut(s) 348, 837
BstZ17I GTATAC 1 cut(s) 457
BsuRI GGCC 4 cut(s) 13, 179, 239, 248
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 5 cut(s) 23, 148, 224, 638, 760
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 4 cut(s) 61, 322, 572, 833
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 831
Cfr13I GGNCC 2 cut(s) 178, 552
CsiI ACCWGGT 1 cut(s) 801
Csp6I GTAC 4 cut(s) 69, 277, 725, 799
CviAII CATG 8 cut(s) 302, 460, 478, 509, 571, 617, 623, 762
CviQI GTAC 4 cut(s) 69, 277, 725, 799
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
DrdI GACNNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 246
EciI GGCGGA 1 cut(s) 503
Eco130I CCWWGG 2 cut(s) 243, 447
Eco147I AGGCCT 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 4 cut(s) 180, 648, 679, 801
EcoT14I CCWWGG 2 cut(s) 243, 447
ErhI CCWWGG 2 cut(s) 243, 447
Esp3I CGTCTC 2 cut(s) 51, 377
FaeI CATG 8 cut(s) 305, 463, 481, 512, 574, 620, 626, 765
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FaqI GGGAC 1 cut(s) 565
FatI CATG 8 cut(s) 301, 459, 477, 508, 570, 616, 622, 761
FauNDI CATATG 1 cut(s) 794
FblI GTMKAC 2 cut(s) 456, 470
Fnu4HI GCNGC 5 cut(s) 86, 240, 337, 826, 829
FokI GGATG 5 cut(s) 10, 155, 231, 625, 767
Fsp4HI GCNGC 5 cut(s) 86, 240, 337, 826, 829
FspBI CTAG 3 cut(s) 317, 344, 813
GlaI GCGC 1 cut(s) 310
GluI GCNGC 5 cut(s) 86, 240, 337, 826, 829
HaeIII GGCC 4 cut(s) 13, 179, 239, 248
HapII CCGG 2 cut(s) 752, 832
HhaI GCGC 1 cut(s) 311
Hin1II CATG 8 cut(s) 305, 463, 481, 512, 574, 620, 626, 765
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 3 cut(s) 186, 298, 472
HpaII CCGG 2 cut(s) 752, 832
HphI GGTGA 2 cut(s) 206, 706
Hpy166II GTNNAC 4 cut(s) 353, 457, 471, 633
Hpy188I TCNGA 5 cut(s) 51, 218, 490, 501, 585
Hpy188III TCNNGA 3 cut(s) 7, 230, 667
Hpy8I GTNNAC 4 cut(s) 353, 457, 471, 633
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 7 cut(s) 287, 353, 397, 418, 633, 745, 810
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 317
Hsp92II CATG 8 cut(s) 305, 463, 481, 512, 574, 620, 626, 765
HspAI GCGC 1 cut(s) 309
KpnI GGTACC 2 cut(s) 72, 802
KroI GCCGGC 1 cut(s) 831
KroNI GCCGGC 1 cut(s) 833
Kzo9I GATC 1 cut(s) 496
Lsp1109I GCAGC 2 cut(s) 348, 837
LweI GCATC 1 cut(s) 32
MabI ACCWGGT 1 cut(s) 801
MaeI CTAG 3 cut(s) 317, 344, 813
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 2 cut(s) 139, 703
MhlI GDGCHC 3 cut(s) 204, 355, 635
MluCI AATT 3 cut(s) 92, 408, 609
MlyI GAGTC 2 cut(s) 195, 466
MmeI TCCRAC 5 cut(s) 41, 513, 524, 553, 608
MroNI GCCGGC 1 cut(s) 831
MseI TTAA 2 cut(s) 173, 578
MslI CAYNNNNRTG 2 cut(s) 621, 766
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 2 cut(s) 752, 832
MspR9I CCNGG 4 cut(s) 182, 650, 681, 803
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 4 cut(s) 182, 650, 681, 803
MwoI GCNNNNNNNGC 2 cut(s) 245, 317
NaeI GCCGGC 1 cut(s) 833
NdeI CATATG 1 cut(s) 794
NdeII GATC 1 cut(s) 496
NgoMIV GCCGGC 1 cut(s) 831
NlaIII CATG 8 cut(s) 305, 463, 481, 512, 574, 620, 626, 765
NlaIV GGNNCC 4 cut(s) 42, 70, 553, 800
NspI RCATGY 2 cut(s) 574, 626
PaeI GCATGC 1 cut(s) 574
PasI CCCWGGG 2 cut(s) 181, 680
PceI AGGCCT 1 cut(s) 13
PciI ACATGT 1 cut(s) 622
PctI GAATGC 1 cut(s) 289
PdiI GCCGGC 1 cut(s) 833
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 5 cut(s) 87, 241, 338, 827, 830
PleI GAGTC 2 cut(s) 194, 466
PpsI GAGTC 2 cut(s) 194, 466
PscI ACATGT 1 cut(s) 622
Psp6I CCWGG 4 cut(s) 180, 648, 679, 801
PspGI CCWGG 4 cut(s) 180, 648, 679, 801
PspN4I GGNNCC 4 cut(s) 42, 70, 553, 800
PspPI GGNCC 2 cut(s) 178, 552
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 4 cut(s) 70, 278, 726, 800
RsaNI GTAC 4 cut(s) 69, 277, 725, 799
RseI CAYNNNNRTG 2 cut(s) 621, 766
SalI GTCGAC 1 cut(s) 469
SaqAI TTAA 2 cut(s) 173, 578
SatI GCNGC 5 cut(s) 86, 240, 337, 826, 829
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 2 cut(s) 178, 552
SchI GAGTC 2 cut(s) 195, 466
ScrFI CCNGG 4 cut(s) 182, 650, 681, 803
SduI GDGCHC 3 cut(s) 204, 355, 635
SetI ASST 9 cut(s) 58, 264, 326, 341, 433, 449, 562, 675, 804
SexAI ACCWGGT 1 cut(s) 801
SfaNI GCATC 1 cut(s) 32
SfiI GGCCNNNNNGGCC 1 cut(s) 245
SinI GGWCC 1 cut(s) 552
SmiMI CAYNNNNRTG 2 cut(s) 621, 766
SpeI ACTAGT 1 cut(s) 343
SphI GCATGC 1 cut(s) 574
Sse9I AATT 3 cut(s) 92, 408, 609
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 6 cut(s) 86, 240, 483, 514, 539, 829
SspMI CTAG 3 cut(s) 317, 344, 813
StuI AGGCCT 1 cut(s) 13
StyD4I CCNGG 4 cut(s) 180, 648, 679, 801
StyI CCWWGG 2 cut(s) 243, 447
TaaI ACNGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 229, 470
TasI AATT 3 cut(s) 92, 408, 609
TauI GCSGC 3 cut(s) 88, 242, 831
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 2 cut(s) 173, 578
Tru9I TTAA 2 cut(s) 173, 578
TscAI CASTG 1 cut(s) 360
TseI GCWGC 2 cut(s) 336, 825
TspDTI ATGAA 5 cut(s) 99, 290, 627, 633, 750
TspGWI ACGGA 2 cut(s) 401, 631
TspRI CASTG 1 cut(s) 360
VneI GTGCAC 2 cut(s) 351, 631
VpaK11BI GGWCC 1 cut(s) 552
XapI RAATTY 1 cut(s) 408
XceI RCATGY 2 cut(s) 574, 626
XcmI CCANNNNNNNNNTGG 2 cut(s) 188, 302
XmiI GTMKAC 2 cut(s) 456, 470
XspI CTAG 3 cut(s) 317, 344, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.