Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Reverse (-)

61491856 .. 61497958

Gene Structure 6103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG452400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTTGCGACGCAGGCTCAGCTCGAAGAGACTAGGGCGGCTGTCGGCGACTTGGCCTGGAGGAATGGCAGCTACGGTTTATCTGGGCTTCTGGGCAGTAGTTGTGGAATAGAAGAGTCGGCCGTGGAATATCAACTACACTACATTTTTGAAAAGCTCAATGGGGAGTTGGCAAACACAGAGAAGAGAGCAAGGGCTGCAGTAGCAGCCGCAAATCCAGCTGATTGTTTCCCTTCAACTCTTGATCCTTCTATTAAAGAAGCATTTGATGTGGCATATGACAATGTATGTGCATTTCATTTTGCCCAGAAGTCAGCAGAGAAAACTGTTGAGAATATGAAGGGTGTCAAATGTAAACAAGTGGCAAGAAGTATTGGTTCTGTAGGTCTTTATGTTCCAGGAGGAACTGCAGTTTTACCTTCTACTGCTCTGGTCCTTGTAGTTCCTGCTCAGATTGCTGGATCTAAAATCGTTGTACTTGTGACTCCCCCAAGTCGGGATGGCAGTATATGCAAGGCTGGTGTAACTCACATCCTTAAAGCTGGTGGTGTTCAGGCGATATCTGCTATGGCTTGGGGTACAGAATCTTGCCCAAAGTCCCATAGGCTTACCATCAACAAGTATTCTGCTTTTGAAACTGCTGGGAAGCTTCCATGGAAGTCCTCTACCCAGCTTAAAGAAAAAGAAGCATTGAACCAAAACTCATTCATTTCATTGGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004399 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0009628 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0052803 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

Histidinol_dh

Protein Analysis

241

Amino Acids

25.52

Weight (kDa)

8.16

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histidinol_dh	PF00815	78 - 202	2.6e-36	Histidinol dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	38, 210
AclWI	GGATC	2 cut(s)	239, 469
AcoI	YGGCCR	1 cut(s)	120
AfaI	GTAC	2 cut(s)	477, 580
AfiI	CCNNNNNNNGG	2 cut(s)	495, 496
AgsI	TTSAA	4 cut(s)	152, 237, 635, 694
AjnI	CCWGG	2 cut(s)	56, 397
AluBI	AGCT	7 cut(s)	22, 72, 157, 221, 542, 649, 673
AluI	AGCT	7 cut(s)	22, 72, 157, 221, 542, 649, 673
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	239, 469
AoxI	GGCC	2 cut(s)	54, 120
ApeKI	GCWGC	3 cut(s)	69, 197, 206
AspS9I	GGNCC	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	433
BbvI	GCAGC	3 cut(s)	81, 184, 218
BccI	CCATC	2 cut(s)	494, 620
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	2 cut(s)	58, 399
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	3 cut(s)	198, 381, 408
BisI	GCNGC	5 cut(s)	39, 70, 198, 207, 210
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	5 cut(s)	40, 71, 199, 208, 211
Bme1390I	CCNGG	2 cut(s)	58, 399
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmrFI	CCNGG	2 cut(s)	58, 399
BpmI	CTGGAG	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	123, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	495, 496
BseBI	CCWGG	2 cut(s)	58, 399
BseDI	CCNNGG	2 cut(s)	123, 653
BseGI	GGATG	2 cut(s)	505, 531
BseLI	CCNNNNNNNGG	2 cut(s)	495, 496
BseMII	CTCAG	2 cut(s)	32, 464
BseX3I	CGGCCG	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	81, 184, 218
BseYI	CCCAGC	2 cut(s)	641, 669
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	56, 122
BsiEI	CGRYCG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	2 cut(s)	495, 496
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	56, 122
Bsp143I	GATC	2 cut(s)	244, 461
Bsp1720I	GCTNAGC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	653
BspACI	CCGC	2 cut(s)	38, 210
BspANI	GGCC	2 cut(s)	56, 122
BspCNI	CTCAG	2 cut(s)	31, 463
BspMAI	CTGCAG	2 cut(s)	202, 412
BspPI	GGATC	2 cut(s)	239, 469
BssECI	CCNNGG	2 cut(s)	123, 653
BssMI	GATC	2 cut(s)	244, 461
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	2 cut(s)	58, 399
Bst4CI	ACNGT	2 cut(s)	77, 328
Bst6I	CTCTTC	3 cut(s)	21, 108, 179
BstAPI	GCANNNNNTGC	2 cut(s)	197, 510
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	18, 450
BstDSI	CCRYGG	2 cut(s)	123, 653
BstF5I	GGATG	2 cut(s)	505, 531
BstKTI	GATC	2 cut(s)	247, 464
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	2 cut(s)	244, 461
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 19, 197, 203, 206, 218, 455, 510, 563
BstNI	CCWGG	2 cut(s)	58, 399
BstSCI	CCNGG	2 cut(s)	56, 397
BstSFI	CTRYAG	3 cut(s)	198, 381, 408
BstV1I	GCAGC	3 cut(s)	81, 184, 218
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	56, 122
BtgI	CCRYGG	2 cut(s)	123, 653
BtsCI	GGATG	2 cut(s)	505, 531
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	476, 579
CviAII	CATG	1 cut(s)	654
CviQI	GTAC	2 cut(s)	476, 579
DdeI	CTNAG	2 cut(s)	18, 450
DpnI	GATC	2 cut(s)	246, 463
DpnII	GATC	2 cut(s)	244, 461
EaeI	YGGCCR	1 cut(s)	120
EagI	CGGCCG	1 cut(s)	120
Eam1104I	CTCTTC	3 cut(s)	21, 108, 179
EarI	CTCTTC	3 cut(s)	21, 108, 179
EclXI	CGGCCG	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	433
Eco52I	CGGCCG	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	56, 397
EcoRV	GATATC	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	1 cut(s)	657
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	1 cut(s)	653
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	39, 70, 198, 207, 210
FokI	GGATG	2 cut(s)	512, 518
Fsp4HI	GCNGC	5 cut(s)	39, 70, 198, 207, 210
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	5 cut(s)	39, 70, 198, 207, 210
GsaI	CCCAGC	2 cut(s)	645, 673
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	56, 122
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	657
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	3 cut(s)	116, 484, 584
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	2 cut(s)	242, 497
Hpy8I	GTNNAC	1 cut(s)	356
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	4 cut(s)	243, 258, 334, 429
HpyCH4III	ACNGT	2 cut(s)	77, 328
HpyCH4V	TGCA	4 cut(s)	200, 293, 410, 513
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 19, 197, 203, 206, 218, 455, 510, 563
HpyF3I	CTNAG	2 cut(s)	18, 450
Hsp92II	CATG	1 cut(s)	657
Kzo9I	GATC	2 cut(s)	244, 461
Lsp1109I	GCAGC	3 cut(s)	81, 184, 218
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	481, 523
MalI	GATC	2 cut(s)	246, 463
MboI	GATC	2 cut(s)	244, 461
MboII	GAAGA	3 cut(s)	38, 125, 196
MflI	RGATCY	1 cut(s)	461
MluCI	AATT	1 cut(s)	721
MlyI	GAGTC	2 cut(s)	125, 478
MnlI	CCTC	3 cut(s)	54, 395, 673
MseI	TTAA	4 cut(s)	255, 537, 675, 724
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	58, 399
MvaI	CCWGG	2 cut(s)	58, 399
MwoI	GCNNNNNNNGC	9 cut(s)	14, 19, 197, 203, 206, 218, 455, 510, 563
NcoI	CCATGG	1 cut(s)	653
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	2 cut(s)	244, 461
NlaIII	CATG	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	584
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	5 cut(s)	40, 71, 199, 208, 211
PleI	GAGTC	2 cut(s)	124, 478
PpsI	GAGTC	2 cut(s)	124, 478
Psp6I	CCWGG	2 cut(s)	56, 397
PspFI	CCCAGC	2 cut(s)	641, 669
PspGI	CCWGG	2 cut(s)	56, 397
PspPI	GGNCC	1 cut(s)	433
PstI	CTGCAG	2 cut(s)	202, 412
PsuI	RGATCY	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	477, 580
RsaNI	GTAC	2 cut(s)	476, 579
SaqAI	TTAA	4 cut(s)	255, 537, 675, 724
SatI	GCNGC	5 cut(s)	39, 70, 198, 207, 210
Sau3AI	GATC	2 cut(s)	244, 461
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	2 cut(s)	125, 478
ScrFI	CCNGG	2 cut(s)	58, 399
SetI	ASST	9 cut(s)	24, 74, 159, 223, 388, 421, 544, 651, 675
SfcI	CTRYAG	3 cut(s)	198, 381, 408
SinI	GGWCC	1 cut(s)	433
Sse9I	AATT	1 cut(s)	721
SsiI	CCGC	2 cut(s)	38, 210
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	56, 397
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	77, 328
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	721
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	2 cut(s)	41, 212
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	4 cut(s)	255, 537, 675, 724
Tru9I	TTAA	4 cut(s)	255, 537, 675, 724
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	3 cut(s)	69, 197, 206
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	4 cut(s)	287, 353, 697, 702
VpaK11BI	GGWCC	1 cut(s)	433
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.