Rroxscaffold_7G00198110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000689
Physical Location & Seq
Reverse (-)
43043592 .. 43048045
4454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198110.1

Sequence Viewer

Length: 279 bp
ATGCGTGTGGCGTGGGAGCTAGAAAAGCATGAGTTTGAGAAGAAGAGGTTCCAGCGGTTCATCCAAAAAAAGGAACAAAAACACATTCCAACTTATAATACATCCACAGACCACGAAGACCAGATCTGCCTATCCGGAGTCCAGGAGCGCATACATTATGTCTTTCACAATCTCGGACTCACCGATCTCAATCAATCTCCATCAAGACTTGCCTTTCAGATCAAATCACAAATGAGCTACTTATTACGACGGAAGATGTATCAACAGATCGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

11.27

Weight (kDa)

9.13

Isoelectric Point (pI)

75.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AccIII TCCGGA 1 cut(s) 134
AciI CCGC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 70
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 19, 237
AluI AGCT 2 cut(s) 19, 237
Aor13HI TCCGGA 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 143
BfaI CTAG 1 cut(s) 20
BglII AGATCT 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 134
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 60, 101
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 134
Bsp143I GATC 4 cut(s) 123, 184, 219, 267
BspACI CCGC 1 cut(s) 55
BspEI TCCGGA 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 50
BssMI GATC 4 cut(s) 123, 184, 219, 267
Bst2UI CCWGG 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 38
BstF5I GGATG 2 cut(s) 60, 101
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 4 cut(s) 126, 187, 222, 270
BstMBI GATC 4 cut(s) 123, 184, 219, 267
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BtsCI GGATG 2 cut(s) 60, 101
CfoI GCGC 1 cut(s) 150
CviAII CATG 1 cut(s) 29
CviJI RGCY 2 cut(s) 19, 237
CviKI_1 RGCY 2 cut(s) 19, 237
DpnI GATC 4 cut(s) 125, 186, 221, 269
DpnII GATC 4 cut(s) 123, 184, 219, 267
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 32
FaiI YATR 4 cut(s) 30, 96, 152, 159
FatI CATG 1 cut(s) 28
FokI GGATG 2 cut(s) 47, 88
FspBI CTAG 1 cut(s) 20
GlaI GCGC 1 cut(s) 149
HapII CCGG 1 cut(s) 135
HhaI GCGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 2 cut(s) 138, 177
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 176, 219
Hpy188III TCNNGA 2 cut(s) 135, 204
Hpy99I CGWCG 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 134
Kzo9I GATC 4 cut(s) 123, 184, 219, 267
LmnI GCTCC 2 cut(s) 16, 145
LpnPI CCDG 5 cut(s) 65, 128, 134, 148, 155
MaeI CTAG 1 cut(s) 20
MalI GATC 4 cut(s) 125, 186, 221, 269
MboI GATC 4 cut(s) 123, 184, 219, 267
MboII GAAGA 4 cut(s) 52, 55, 128, 265
MflI RGATCY 1 cut(s) 123
MlyI GAGTC 2 cut(s) 147, 171
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 2 cut(s) 39, 265
MroI TCCGGA 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 4 cut(s) 123, 184, 219, 267
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 47
PfoI TCCNGGA 1 cut(s) 141
PleI GAGTC 2 cut(s) 146, 171
PpsI GAGTC 2 cut(s) 146, 171
PsiI TTATAA 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 123
Sau3AI GATC 4 cut(s) 123, 184, 219, 267
SchI GAGTC 2 cut(s) 147, 171
ScrFI CCNGG 1 cut(s) 143
SetI ASST 3 cut(s) 21, 50, 239
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.