Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Reverse (-)

23763654 .. 23764912

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001972

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATCAAAATCTTCTATTACTTTCCAGGTATTACTGCTGCTTCTGGGATAGCAGCAGAGCTGGGGATCCCATTAACGCACAGAGGTGTTGCAAATAGTCTGTTAAATCCAACAGAGTTCTTGGAGGACATTGTAATTGAGCATGAACATGTTGAGTGCACTTCATCTGTAATCCAGGCTTTAGTTCTGTTCAAGAAGCTACACCCTGGGCATAGGAAGAAAGATATTGAACATTCCATCACCAATGTTGTACGCTACATTGAAAATATGCAAATGCCGGATGGTTCATGGTATGGAGATTGGGGAGTTTGCTTCACATATGGTACCTGGTTTGCACTAGGAGGATTGGCAGCTGCTGGCAAGACTTTTAGCACTTGTGCAGCCATGCGCAATGGGGTTAGCAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

137

Amino Acids

15.06

Weight (kDa)

7.01

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_C	PF13243	73 - 129	1.6e-12	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AclWI	GGATC	2 cut(s)	61, 74
AfaI	GTAC	2 cut(s)	252, 325
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	193, 230, 263
AjnI	CCWGG	4 cut(s)	25, 174, 205, 326
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	61, 199, 353
AluI	AGCT	3 cut(s)	61, 199, 353
Alw21I	GWGCWC	1 cut(s)	161
Alw44I	GTGCAC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	61, 74
AlwNI	CAGNNNCTG	1 cut(s)	356
ApaLI	GTGCAC	1 cut(s)	157
ApeKI	GCWGC	5 cut(s)	38, 53, 350, 353, 380
Asp718I	GGTACC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	5 cut(s)	25, 65, 340, 362, 392
BccI	CCATC	2 cut(s)	245, 275
BciT130I	CCWGG	4 cut(s)	27, 176, 207, 328
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	5 cut(s)	39, 54, 351, 354, 381
BlsI	GCNGC	5 cut(s)	40, 55, 352, 355, 382
Bme1390I	CCNGG	4 cut(s)	27, 176, 207, 328
BmiI	GGNNCC	2 cut(s)	68, 325
BmrFI	CCNGG	4 cut(s)	27, 176, 207, 328
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	205, 206
Bse3DI	GCAATG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	4 cut(s)	27, 176, 207, 328
BseDI	CCNNGG	2 cut(s)	205, 206
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	397
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	5 cut(s)	25, 65, 340, 362, 392
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	399
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	3, 66
BspLI	GGNNCC	2 cut(s)	68, 325
BspPI	GGATC	2 cut(s)	61, 74
BspT107I	GGYRCC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	205, 206
BssMI	GATC	2 cut(s)	3, 66
Bst2UI	CCWGG	4 cut(s)	27, 176, 207, 328
BstC8I	GCNNGC	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	2 cut(s)	6, 69
BstMBI	GATC	2 cut(s)	3, 66
BstNI	CCWGG	4 cut(s)	27, 176, 207, 328
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	4 cut(s)	25, 174, 205, 326
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	5 cut(s)	25, 65, 340, 362, 392
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	358
CaiI	CAGNNNCTG	1 cut(s)	356
CfoI	GCGC	1 cut(s)	390
CsiI	ACCWGGT	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	251, 324
CviAII	CATG	4 cut(s)	143, 149, 288, 385
CviJI	RGCY	5 cut(s)	61, 179, 199, 353, 383
CviKI_1	RGCY	5 cut(s)	61, 179, 199, 353, 383
CviQI	GTAC	2 cut(s)	251, 324
DpnI	GATC	2 cut(s)	5, 68
DpnII	GATC	2 cut(s)	3, 66
EcoRII	CCWGG	4 cut(s)	25, 174, 205, 326
FaeI	CATG	4 cut(s)	146, 152, 291, 388
FaiI	YATR	9 cut(s)	144, 150, 213, 269, 289, 294, 319, 321, 386
FatI	CATG	4 cut(s)	142, 148, 287, 384
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	39, 54, 351, 354, 381
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	5 cut(s)	39, 54, 351, 354, 381
FspBI	CTAG	1 cut(s)	338
FspI	TGCGCA	1 cut(s)	389
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	5 cut(s)	39, 54, 351, 354, 381
GsaI	CCCAGC	1 cut(s)	65
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	146, 152, 291, 388
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	159
HpyCH4V	TGCA	5 cut(s)	92, 159, 271, 335, 380
Hsp92II	CATG	4 cut(s)	146, 152, 291, 388
HspAI	GCGC	1 cut(s)	388
KpnI	GGTACC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 66
Lsp1109I	GCAGC	5 cut(s)	25, 65, 340, 362, 392
MabI	ACCWGGT	1 cut(s)	326
MaeI	CTAG	1 cut(s)	338
MalI	GATC	2 cut(s)	5, 68
MboI	GATC	2 cut(s)	3, 66
MboII	GAAGA	2 cut(s)	4, 229
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	77, 118, 335
MseI	TTAA	2 cut(s)	74, 104
MslI	CAYNNNNRTG	2 cut(s)	84, 147
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	4 cut(s)	27, 176, 207, 328
MvaI	CCWGG	4 cut(s)	27, 176, 207, 328
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	2 cut(s)	3, 66
NlaIII	CATG	4 cut(s)	146, 152, 291, 388
NlaIV	GGNNCC	2 cut(s)	68, 325
NsbI	TGCGCA	1 cut(s)	389
NspI	RCATGY	1 cut(s)	152
OliI	CACNNNNGTG	1 cut(s)	84
PasI	CCCWGGG	1 cut(s)	206
PciI	ACATGT	1 cut(s)	148
PkrI	GCNGC	5 cut(s)	40, 55, 352, 355, 382
PscI	ACATGT	1 cut(s)	148
Psp6I	CCWGG	4 cut(s)	25, 174, 205, 326
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	4 cut(s)	25, 174, 205, 326
PspN4I	GGNNCC	2 cut(s)	68, 325
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	252, 325
RsaNI	GTAC	2 cut(s)	251, 324
RseI	CAYNNNNRTG	2 cut(s)	84, 147
SaqAI	TTAA	2 cut(s)	74, 104
SatI	GCNGC	5 cut(s)	39, 54, 351, 354, 381
Sau3AI	GATC	2 cut(s)	3, 66
ScrFI	CCNGG	4 cut(s)	27, 176, 207, 328
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	6 cut(s)	31, 63, 88, 201, 329, 355
SexAI	ACCWGGT	1 cut(s)	326
SmiMI	CAYNNNNRTG	2 cut(s)	84, 147
Sse9I	AATT	1 cut(s)	135
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	4 cut(s)	25, 174, 205, 326
TasI	AATT	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	74, 104
Tru9I	TTAA	2 cut(s)	74, 104
TseI	GCWGC	5 cut(s)	38, 53, 350, 353, 380
TspDTI	ATGAA	3 cut(s)	153, 159, 276
VneI	GTGCAC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.