Rmu_sc0008411.1_g000028

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008411.1
OG0000689
Physical Location & Seq
Reverse (-)
118336 .. 120317
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008411.1_g000028.1.cds

Sequence Viewer

Length: 351 bp
atgcttcggtggcagctggctggaacgcagggctgcaggaagggggcagcaggggctgctgtgcaaggttgcaagcacacgggcgctcgggctgcagcgaaggctcggctagctcgggctaggggctgctttggtgagagagatccaactcctattcaccgtgctgcaagggtcttgatgaacggtcagttggatgatggtgattttccccaacaggaactggtgggagttttcatgaggaatgcaatgttacactatggaggatataggaatgttttcccattgtgggctcgcggagagtatcgtacgtactctggagcagttgctttagcaaaaggatttgaaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

116

Amino Acids

12.62

Weight (kDa)

10.21

Isoelectric Point (pI)

17.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 294
AciI CCGC 1 cut(s) 294
AclWI GGATC 1 cut(s) 137
AfaI GTAC 2 cut(s) 307, 311
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 344
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 16, 113
AluI AGCT 2 cut(s) 16, 113
AlwI GGATC 1 cut(s) 137
AlwNI CAGNNNCTG 2 cut(s) 56, 220
Ama87I CYCGRG 2 cut(s) 87, 114
ApeKI GCWGC 8 cut(s) 13, 33, 47, 56, 92, 95, 126, 164
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 146, 149, 212
AsuNHI GCTAGC 1 cut(s) 109
AvaI CYCGRG 2 cut(s) 87, 114
BanII GRGCYC 1 cut(s) 292
BbvI GCAGC 8 cut(s) 20, 25, 43, 59, 79, 107, 113, 151
BccI CCATC 1 cut(s) 191
BfaI CTAG 2 cut(s) 110, 120
BfmI CTRYAG 2 cut(s) 34, 93
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 8 cut(s) 14, 34, 48, 57, 93, 96, 127, 165
BlsI GCNGC 8 cut(s) 15, 35, 49, 58, 94, 97, 128, 166
BmeT110I CYCGRG 2 cut(s) 87, 114
BmtI GCTAGC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 252
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 8 cut(s) 20, 25, 43, 59, 79, 107, 113, 151
Bsh1236I CGCG 1 cut(s) 294
BsiHKCI CYCGRG 2 cut(s) 87, 114
BsiWI CGTACG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 286
BsmI GAATGC 1 cut(s) 247
BsoBI CYCGRG 2 cut(s) 87, 114
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 294
BspFNI CGCG 1 cut(s) 294
BspHI TCATGA 1 cut(s) 234
BspMAI CTGCAG 2 cut(s) 38, 97
BspOI GCTAGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 1 cut(s) 225
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 161, 185
BstAPI GCANNNNNTGC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 4 cut(s) 18, 74, 111, 292
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 6 cut(s) 10, 53, 56, 92, 101, 110
BstSFI CTRYAG 2 cut(s) 34, 93
BstSNI TACGTA 1 cut(s) 309
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 8 cut(s) 20, 25, 43, 59, 79, 107, 113, 151
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BtsCI GGATG 1 cut(s) 199
Cac8I GCNNGC 4 cut(s) 18, 74, 111, 292
CaiI CAGNNNCTG 2 cut(s) 56, 220
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 306, 310
CviAII CATG 1 cut(s) 235
CviQI GTAC 2 cut(s) 306, 310
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco105I TACGTA 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 292
Eco88I CYCGRG 2 cut(s) 87, 114
EcoT38I GRGCYC 1 cut(s) 292
FaeI CATG 1 cut(s) 238
FaiI YATR 3 cut(s) 236, 258, 267
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 8 cut(s) 14, 34, 48, 57, 93, 96, 127, 165
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 8 cut(s) 14, 34, 48, 57, 93, 96, 127, 165
FspBI CTAG 2 cut(s) 110, 120
GlaI GCGC 1 cut(s) 85
GluI GCNGC 8 cut(s) 14, 34, 48, 57, 93, 96, 127, 165
GsuI CTGGAG 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 87
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HphI GGTGA 3 cut(s) 146, 149, 212
Hpy188III TCNNGA 3 cut(s) 175, 235, 315
HpyAV CCTTC 2 cut(s) 34, 94
HpyCH4III ACNGT 2 cut(s) 161, 185
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 6 cut(s) 36, 64, 72, 95, 167, 245
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 53, 56, 92, 101, 110
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 8 cut(s) 2, 6, 14, 22, 36, 200, 206, 300
Lsp1109I GCAGC 8 cut(s) 20, 25, 43, 59, 79, 107, 113, 151
MaeI CTAG 2 cut(s) 110, 120
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 249
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 292
MmeI TCCRAC 2 cut(s) 170, 171
MnlI CCTC 2 cut(s) 231, 254
MroXI GAANNNNTTC 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 247
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 6 cut(s) 10, 53, 56, 92, 101, 110
NdeII GATC 1 cut(s) 142
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 1 cut(s) 238
NmeAIII GCCGAG 1 cut(s) 85
PagI TCATGA 1 cut(s) 234
PctI GAATGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 275
Pfl23II CGTACG 1 cut(s) 305
PkrI GCNGC 8 cut(s) 15, 35, 49, 58, 94, 97, 128, 166
Ppu21I YACGTR 1 cut(s) 309
PspLI CGTACG 1 cut(s) 305
PstI CTGCAG 2 cut(s) 38, 97
PstNI CAGNNNCTG 2 cut(s) 56, 220
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 2 cut(s) 307, 311
RsaNI GTAC 2 cut(s) 306, 310
SatI GCNGC 8 cut(s) 14, 34, 48, 57, 93, 96, 127, 165
Sau3AI GATC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 292
SetI ASST 5 cut(s) 18, 70, 115, 311, 349
SfcI CTRYAG 2 cut(s) 34, 93
SnaBI TACGTA 1 cut(s) 309
SsiI CCGC 1 cut(s) 294
SspMI CTAG 2 cut(s) 110, 120
TaaI ACNGT 2 cut(s) 161, 185
TaiI ACGT 1 cut(s) 311
TseI GCWGC 8 cut(s) 13, 33, 47, 56, 92, 95, 126, 164
TspDTI ATGAA 2 cut(s) 194, 223
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 2 cut(s) 110, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.