Rh6AG232100

Ribosomal protein L13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000689
Physical Location & Seq
Reverse (-)
41610376 .. 41615037
4662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG232100.1

Sequence Viewer

Length: 453 bp
ATGAAATCTCTAGATGTGATTGTGTTGTGCAAGGATGGCAGCCTTCGACGTGGGCTCTGCAGATATGGGTGGCGGCGAGGTTTTGACGGGATAAGCAGCGGCGTGGTTCTGAGGAGCTATGTAGCGGTGAAGACCGGGATGATCCGAGCAGCGGCTTTCGATTCTGGAGAGGTGCGGTGGAGTGCCTCTTCTGACAAGAGGATCTCACAGGAATTGAGTGGAGATGCCTTTGGAGAGCTGGATGATTTGCATTTGAAGAAGTTGAAAGTCACTGAAGGTAAAGTTGGAAGAAGAAGAAGAAGAGAGAAATGGCAAGCCAGGCAGCTAGGTCTTTTAACGAAAGCTGTTGCCGGCCTCAGACGTATTAATCTTAATGGTCTGAGATGGAGAGTATTCGATGCGAAAGGCCAGGTTCTTGTTTGTGACTTTCATAACATTTCTGGTAACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

10.59

Isoelectric Point (pI)

62.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 73, 99, 125, 152, 175
AclWI GGATC 2 cut(s) 136, 209
AcuI CTGAAG 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 2 cut(s) 256, 265
AjiI CACGTC 1 cut(s) 50
AjnI CCWGG 2 cut(s) 317, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 4 cut(s) 117, 238, 325, 344
AluI AGCT 4 cut(s) 117, 238, 325, 344
AlwI GGATC 2 cut(s) 136, 209
AoxI GGCC 2 cut(s) 352, 406
ApeKI GCWGC 4 cut(s) 39, 96, 149, 322
AseI ATTAAT 1 cut(s) 366
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 139
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 4 cut(s) 51, 108, 161, 334
BccI CCATC 2 cut(s) 29, 378
BciT130I CCWGG 2 cut(s) 319, 410
BcnI CCSGG 1 cut(s) 136
BfaI CTAG 3 cut(s) 11, 326, 451
BfmI CTRYAG 1 cut(s) 58
BisI GCNGC 7 cut(s) 40, 74, 97, 100, 150, 153, 323
BlsI GCNGC 7 cut(s) 41, 75, 98, 101, 151, 154, 324
Bme1390I CCNGG 3 cut(s) 136, 319, 410
BmgBI CACGTC 1 cut(s) 50
BmrFI CCNGG 3 cut(s) 136, 319, 410
BmsI GCATC 2 cut(s) 214, 388
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 350
BseBI CCWGG 2 cut(s) 319, 410
BseGI GGATG 3 cut(s) 40, 144, 247
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 101, 370, 371
BseRI GAGGAG 1 cut(s) 127
BseXI GCAGC 4 cut(s) 51, 108, 161, 334
BshFI GGCC 2 cut(s) 354, 408
BsiSI CCGG 2 cut(s) 135, 351
BslI CCNNNNNNNGG 1 cut(s) 151
BsnI GGCC 2 cut(s) 354, 408
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 141, 201
BspACI CCGC 5 cut(s) 73, 99, 125, 152, 175
BspANI GGCC 2 cut(s) 354, 408
BspCNI CTCAG 3 cut(s) 102, 369, 372
BspMAI CTGCAG 1 cut(s) 62
BspPI GGATC 2 cut(s) 136, 209
BsrFI RCCGGY 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 350
BssMI GATC 2 cut(s) 141, 201
Bst2UI CCWGG 2 cut(s) 319, 410
Bst6I CTCTTC 2 cut(s) 193, 295
BstC8I GCNNGC 2 cut(s) 315, 352
BstDEI CTNAG 3 cut(s) 110, 356, 380
BstF5I GGATG 3 cut(s) 40, 144, 247
BstKTI GATC 2 cut(s) 144, 204
BstMBI GATC 2 cut(s) 141, 201
BstMWI GCNNNNNNNGC 2 cut(s) 36, 319
BstNI CCWGG 2 cut(s) 319, 410
BstSCI CCNGG 3 cut(s) 134, 317, 408
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 4 cut(s) 51, 108, 161, 334
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuRI GGCC 2 cut(s) 354, 408
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 3 cut(s) 40, 144, 247
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 315, 352
Cfr10I RCCGGY 1 cut(s) 350
DdeI CTNAG 3 cut(s) 110, 356, 380
DpnI GATC 2 cut(s) 143, 203
DpnII GATC 2 cut(s) 141, 201
Eam1104I CTCTTC 2 cut(s) 193, 295
EarI CTCTTC 2 cut(s) 193, 295
Eco24I GRGCYC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 317, 408
EcoT38I GRGCYC 1 cut(s) 57
FaiI YATR 3 cut(s) 66, 120, 432
Fnu4HI GCNGC 7 cut(s) 40, 74, 97, 100, 150, 153, 323
FokI GGATG 3 cut(s) 47, 151, 254
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 7 cut(s) 40, 74, 97, 100, 150, 153, 323
FspBI CTAG 3 cut(s) 11, 326, 451
GluI GCNGC 7 cut(s) 40, 74, 97, 100, 150, 153, 323
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 354, 408
HapII CCGG 2 cut(s) 135, 351
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 135, 351
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 5 cut(s) 111, 146, 193, 359, 381
Hpy188III TCNNGA 2 cut(s) 11, 165
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 53, 269
HpyCH4IV ACGT 2 cut(s) 49, 361
HpyCH4V TGCA 3 cut(s) 30, 60, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 319
HpyF3I CTNAG 3 cut(s) 110, 356, 380
HpySE526I ACGT 2 cut(s) 49, 361
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Kzo9I GATC 2 cut(s) 141, 201
LmnI GCTCC 1 cut(s) 114
Lsp1109I GCAGC 4 cut(s) 51, 108, 161, 334
LweI GCATC 2 cut(s) 214, 388
MaeI CTAG 3 cut(s) 11, 326, 451
MaeII ACGT 2 cut(s) 49, 361
MaeIII GTNAC 3 cut(s) 268, 422, 443
MalI GATC 2 cut(s) 143, 203
MboI GATC 2 cut(s) 141, 201
MboII GAAGA 8 cut(s) 142, 180, 268, 300, 303, 306, 309, 312
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 6 cut(s) 71, 105, 163, 192, 196, 365
MroNI GCCGGC 1 cut(s) 350
MseI TTAA 3 cut(s) 335, 366, 372
MspA1I CMGCKG 2 cut(s) 99, 152
MspI CCGG 2 cut(s) 135, 351
MspR9I CCNGG 3 cut(s) 136, 319, 410
MvaI CCWGG 2 cut(s) 319, 410
MwoI GCNNNNNNNGC 2 cut(s) 36, 319
NaeI GCCGGC 1 cut(s) 352
NciI CCSGG 1 cut(s) 136
NdeII GATC 2 cut(s) 141, 201
NgoMIV GCCGGC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 268, 422
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 7 cut(s) 41, 75, 98, 101, 151, 154, 324
PshBI ATTAAT 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 317, 408
PspGI CCWGG 2 cut(s) 317, 408
PstI CTGCAG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 201
SaqAI TTAA 3 cut(s) 335, 366, 372
SatI GCNGC 7 cut(s) 40, 74, 97, 100, 150, 153, 323
Sau3AI GATC 2 cut(s) 141, 201
ScrFI CCNGG 3 cut(s) 136, 319, 410
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 2 cut(s) 214, 388
SfcI CTRYAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 212
SsiI CCGC 5 cut(s) 73, 99, 125, 152, 175
SspMI CTAG 3 cut(s) 11, 326, 451
StyD4I CCNGG 3 cut(s) 134, 317, 408
TaiI ACGT 2 cut(s) 52, 364
TaqI TCGA 3 cut(s) 46, 159, 396
TasI AATT 1 cut(s) 212
TauI GCSGC 3 cut(s) 76, 102, 155
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 335, 366, 372
Tru9I TTAA 3 cut(s) 335, 366, 372
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 2 cut(s) 268, 422
TseI GCWGC 4 cut(s) 39, 96, 149, 322
Tsp45I GTSAC 2 cut(s) 268, 422
TspDTI ATGAA 2 cut(s) 17, 419
TspRI CASTG 1 cut(s) 277
VspI ATTAAT 1 cut(s) 366
XbaI TCTAGA 1 cut(s) 10
XspI CTAG 3 cut(s) 11, 326, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.