RLG00000009011

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
44924960 .. 44931398
6439 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009011

Sequence Viewer

Length: 501 bp
ATGGTGAAGGTATGGGCTGAGAAAGAAAAGAGGAATCTGGACAGGATGGTGAAAAATGGAATTACATGCCCAACTACAATTGATATAAAAGATTATGTTCTGGTCATGAAATTCATAGGTATTACTGCTGCTTCTGGGATAGCAGCAGAGCTGGGGATCCCATTAACGCACAGAGGTGTTGCAAATAGTCTGTTAAATCCGACAGAGTTCTTGGAGGACATTGTAATTGAGCATGAACATGTTGAGTGCACTTCATCTGTAATCCAGGCTTTAGTTCTGTTCAAGAAGCTACACCCTGGGCATAGGAAGAAAGAGATTGAACATTCCATCACCAATGTTGTACGCTACATTGAAAATATGCAAATGCCGGATGGTTCATGGTATGGAGATTGGGGAGTTTGCTTCACATATGGTACCTGGTTTGCACTAGGAGGATTGGCAGCTGCTGGCAAGACTTTTAGCACTTGTGCAGCCATGCGCAATGGGGTTAGCAGGAGATGA

Protein Analysis

167

Amino Acids

18.48

Weight (kDa)

8.35

Isoelectric Point (pI)

23.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIO1 PF01163 1 - 40 2e-09 RIO domain
SQHop_cyclase_C PF13243 103 - 155 2.8e-12 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 479
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AclWI GGATC 2 cut(s) 151, 164
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 2 cut(s) 342, 415
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 283, 320, 353
AjnI CCWGG 3 cut(s) 264, 295, 416
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 3 cut(s) 151, 289, 443
AluI AGCT 3 cut(s) 151, 289, 443
Alw21I GWGCWC 1 cut(s) 251
Alw44I GTGCAC 1 cut(s) 247
AlwI GGATC 2 cut(s) 151, 164
AlwNI CAGNNNCTG 1 cut(s) 446
ApaLI GTGCAC 1 cut(s) 247
ApeKI GCWGC 5 cut(s) 128, 143, 440, 443, 470
ApoI RAATTY 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 480
AsuHPI GGTGA 3 cut(s) 16, 61, 322
BaeGI GKGCMC 1 cut(s) 251
BamHI GGATCC 1 cut(s) 156
BanI GGYRCC 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 5 cut(s) 115, 155, 430, 452, 482
BccI CCATC 3 cut(s) 40, 335, 365
BciT130I CCWGG 3 cut(s) 266, 297, 418
BfaI CTAG 1 cut(s) 428
BisI GCNGC 5 cut(s) 129, 144, 441, 444, 471
BlsI GCNGC 5 cut(s) 130, 145, 442, 445, 472
Bme1390I CCNGG 3 cut(s) 266, 297, 418
BmiI GGNNCC 2 cut(s) 158, 415
BmrFI CCNGG 3 cut(s) 266, 297, 418
BsaJI CCNNGG 2 cut(s) 295, 296
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 3 cut(s) 266, 297, 418
BseDI CCNNGG 2 cut(s) 295, 296
BseGI GGATG 2 cut(s) 51, 376
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 9
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 5 cut(s) 115, 155, 430, 452, 482
BseYI CCCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 489
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 10
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 158, 415
BspPI GGATC 2 cut(s) 151, 164
BspT107I GGYRCC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 487
BssECI CCNNGG 2 cut(s) 295, 296
BssMI GATC 1 cut(s) 156
Bst2UI CCWGG 3 cut(s) 266, 297, 418
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 51, 376
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstNI CCWGG 3 cut(s) 266, 297, 418
BstNSI RCATGY 2 cut(s) 69, 242
BstSCI CCNGG 3 cut(s) 264, 295, 416
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 5 cut(s) 115, 155, 430, 452, 482
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BtsCI GGATG 2 cut(s) 51, 376
Cac8I GCNNGC 1 cut(s) 448
CaiI CAGNNNCTG 1 cut(s) 446
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 480
CsiI ACCWGGT 1 cut(s) 416
Csp6I GTAC 2 cut(s) 341, 414
CviAII CATG 6 cut(s) 66, 106, 233, 239, 378, 475
CviJI RGCY 6 cut(s) 17, 151, 269, 289, 443, 473
CviKI_1 RGCY 6 cut(s) 17, 151, 269, 289, 443, 473
CviQI GTAC 2 cut(s) 341, 414
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
EcoRII CCWGG 3 cut(s) 264, 295, 416
FaeI CATG 6 cut(s) 69, 109, 236, 242, 381, 478
FatI CATG 6 cut(s) 65, 105, 232, 238, 377, 474
FauNDI CATATG 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 129, 144, 441, 444, 471
FokI GGATG 2 cut(s) 58, 383
Fsp4HI GCNGC 5 cut(s) 129, 144, 441, 444, 471
FspBI CTAG 1 cut(s) 428
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 1 cut(s) 479
GluI GCNGC 5 cut(s) 129, 144, 441, 444, 471
GsaI CCCAGC 1 cut(s) 155
HapII CCGG 1 cut(s) 368
HhaI GCGC 1 cut(s) 480
Hin1II CATG 6 cut(s) 69, 109, 236, 242, 381, 478
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HinfI GANTC 1 cut(s) 34
HpaII CCGG 1 cut(s) 368
HphI GGTGA 3 cut(s) 16, 61, 322
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 3 cut(s) 38, 106, 283
Hpy8I GTNNAC 1 cut(s) 249
HpyCH4V TGCA 5 cut(s) 182, 249, 361, 425, 470
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 6 cut(s) 69, 109, 236, 242, 381, 478
HspAI GCGC 1 cut(s) 478
KpnI GGTACC 1 cut(s) 417
Kzo9I GATC 1 cut(s) 156
Lsp1109I GCAGC 5 cut(s) 115, 155, 430, 452, 482
MabI ACCWGGT 1 cut(s) 416
MaeI CTAG 1 cut(s) 428
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 319
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 4 cut(s) 60, 78, 110, 225
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 4 cut(s) 24, 167, 208, 425
MseI TTAA 2 cut(s) 164, 194
MslI CAYNNNNRTG 2 cut(s) 174, 237
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 3 cut(s) 266, 297, 418
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 3 cut(s) 266, 297, 418
NdeI CATATG 1 cut(s) 409
NdeII GATC 1 cut(s) 156
NlaIII CATG 6 cut(s) 69, 109, 236, 242, 381, 478
NlaIV GGNNCC 2 cut(s) 158, 415
NsbI TGCGCA 1 cut(s) 479
NspI RCATGY 2 cut(s) 69, 242
OliI CACNNNNGTG 1 cut(s) 174
PagI TCATGA 1 cut(s) 105
PasI CCCWGGG 1 cut(s) 296
PciI ACATGT 1 cut(s) 238
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 5 cut(s) 130, 145, 442, 445, 472
PscI ACATGT 1 cut(s) 238
Psp6I CCWGG 3 cut(s) 264, 295, 416
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 3 cut(s) 264, 295, 416
PspN4I GGNNCC 2 cut(s) 158, 415
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 2 cut(s) 342, 415
RsaNI GTAC 2 cut(s) 341, 414
RseI CAYNNNNRTG 2 cut(s) 174, 237
SaqAI TTAA 2 cut(s) 164, 194
SatI GCNGC 5 cut(s) 129, 144, 441, 444, 471
Sau3AI GATC 1 cut(s) 156
ScrFI CCNGG 3 cut(s) 266, 297, 418
SduI GDGCHC 1 cut(s) 251
SetI ASST 7 cut(s) 12, 121, 153, 178, 291, 419, 445
SexAI ACCWGGT 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 174, 237
Sse9I AATT 4 cut(s) 60, 78, 110, 225
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 3 cut(s) 264, 295, 416
TasI AATT 4 cut(s) 60, 78, 110, 225
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 164, 194
Tru9I TTAA 2 cut(s) 164, 194
TseI GCWGC 5 cut(s) 128, 143, 440, 443, 470
TspDTI ATGAA 5 cut(s) 103, 122, 243, 249, 366
VneI GTGCAC 1 cut(s) 247
XapI RAATTY 1 cut(s) 110
XceI RCATGY 2 cut(s) 69, 242
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.