Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006997.1

Orthogroup ID

OG0000689

Physical Location & Seq

Genomic Coordinates Forward (+)

45116 .. 45808

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006997.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgtatggagattggggagtttgcttcacatatggtacctggtttgcactaggaggattggcagctgctggcaagacttttagcactcctgcagccatgcgcaatggggttaactttctacttatgacgcagagagagaatggtggttggggagaaagctatctttcatgtccacaaaagacatacattcctcttgaaggaaaccgatccaatctggtgcagactgcttgggctatgatgggtctcattcatgcgggacaagcagaaagaaacccgacacctcttcattgtgcagcaaagtttataatcaattctcaactggaaaatggtgattttcctcagcaggaaatcactggagtcttcaagaagaactgcatgcaacattatgcagcatatagaaatatatacccactgtgggctcttgcagaatatcgcaatcgggttccgttgccttccaagggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

154

Amino Acids

17.17

Weight (kDa)

8.95

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08040
malus_domestica	MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis	pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis	RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata	RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora	Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha	Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana	Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
Acc16I	TGCGCA	1 cut(s)	101
Acc65I	GGTACC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	3 cut(s)	197, 415, 458
AgsI	TTSAA	2 cut(s)	197, 364
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	65, 159
AluI	AGCT	2 cut(s)	65, 159
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	68
ApeKI	GCWGC	5 cut(s)	62, 65, 92, 293, 389
Asp718I	GGTACC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	352
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	5 cut(s)	52, 74, 104, 305, 401
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	5 cut(s)	63, 66, 93, 294, 390
BlsI	GCNGC	5 cut(s)	64, 67, 94, 295, 391
Bme1390I	CCNGG	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	37, 444
BmrFI	CCNGG	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 415, 458
Bse1I	ACTGG	2 cut(s)	324, 358
Bse3DI	GCAATG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	456
BseLI	CCNNNNNNNGG	3 cut(s)	197, 415, 458
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	2 cut(s)	324, 358
BseXI	GCAGC	5 cut(s)	52, 74, 104, 305, 401
BsgI	GTGCAG	2 cut(s)	239, 312
BshNI	GGYRCC	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	3 cut(s)	197, 415, 458
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	206
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	37, 444
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	201
BspT107I	GGYRCC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	324, 358
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	70, 377
BstDEI	CTNAG	1 cut(s)	339
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	1 cut(s)	209
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	5 cut(s)	52, 74, 104, 305, 401
BstV2I	GAAGAC	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	351, 410
Cac8I	GCNNGC	2 cut(s)	70, 377
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	102
CseI	GACGC	1 cut(s)	136
CsiI	ACCWGGT	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	4 cut(s)	97, 168, 251, 376
CviJI	RGCY	6 cut(s)	65, 95, 159, 233, 419, 462
CviKI_1	RGCY	6 cut(s)	65, 95, 159, 233, 419, 462
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	4 cut(s)	100, 171, 254, 379
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	4 cut(s)	96, 167, 250, 375
FauI	CCCGC	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	5 cut(s)	63, 66, 93, 294, 390
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	5 cut(s)	63, 66, 93, 294, 390
FspBI	CTAG	1 cut(s)	50
FspI	TGCGCA	1 cut(s)	101
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	5 cut(s)	63, 66, 93, 294, 390
GsuI	CTGGAG	1 cut(s)	375
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	100, 171, 254, 379
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	357
HpaI	GTTAAC	1 cut(s)	112
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	112, 173
Hpy188III	TCNNGA	2 cut(s)	194, 364
Hpy8I	GTNNAC	2 cut(s)	112, 173
HpyAV	CCTTC	2 cut(s)	191, 462
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4V	TGCA	8 cut(s)	47, 92, 220, 293, 375, 379, 389, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	4 cut(s)	100, 171, 254, 379
HspAI	GCGC	1 cut(s)	100
KpnI	GGTACC	1 cut(s)	39
KspAI	GTTAAC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	206
LpnPI	CCDG	8 cut(s)	25, 52, 54, 102, 200, 305, 329, 339
Lsp1109I	GCAGC	5 cut(s)	52, 74, 104, 305, 401
MabI	ACCWGGT	1 cut(s)	38
MaeI	CTAG	1 cut(s)	50
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	3 cut(s)	275, 352, 379
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	1 cut(s)	310
MlyI	GAGTC	1 cut(s)	366
MnlI	CCTC	4 cut(s)	47, 201, 291, 348
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	4 cut(s)	100, 171, 254, 379
NlaIV	GGNNCC	2 cut(s)	37, 444
NsbI	TGCGCA	1 cut(s)	101
NspI	RCATGY	1 cut(s)	379
PaeI	GCATGC	1 cut(s)	379
PkrI	GCNGC	5 cut(s)	64, 67, 94, 295, 391
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	2 cut(s)	37, 444
PstI	CTGCAG	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	5 cut(s)	63, 66, 93, 294, 390
Sau3AI	GATC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	4 cut(s)	41, 67, 161, 283
SexAI	ACCWGGT	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	90
SphI	GCATGC	1 cut(s)	379
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	414
TasI	AATT	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	358, 417
TseI	GCWGC	5 cut(s)	62, 65, 92, 293, 389
TspDTI	ATGAA	3 cut(s)	156, 239, 275
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	2 cut(s)	358, 417
XagI	CCTNNNNNAGG	1 cut(s)	195
XceI	RCATGY	1 cut(s)	379
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.