Rh2BG342900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000689
Physical Location & Seq
Reverse (-)
45804688 .. 45807471
2784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG342900.1

Sequence Viewer

Length: 192 bp
ATGGGTGTATTCATTAAAGAGAGGCTATATGCATATGCAACCCATCAACGTAGAACAGTAGAAGTGGCACAGTCTTCTTCCTCTTCTGTACTGGGAACACGGTTTACAACCAAAGGGTTAGATGCTGCTGGTGACACCTACTATGATTGCGCGGCTGTACGCGGAGGTGTTGTACGTTTACCCAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.86

Weight (kDa)

9.65

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 152, 162
AciI CCGC 2 cut(s) 152, 162
AfaI GTAC 3 cut(s) 90, 159, 174
ApeKI GCWGC 1 cut(s) 125
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 51
BisI GCNGC 2 cut(s) 126, 153
BlsI GCNGC 2 cut(s) 127, 154
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse1I ACTGG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 2 cut(s) 152, 162
BspACI CCGC 2 cut(s) 152, 162
BspFNI CGCG 2 cut(s) 152, 162
BsrI ACTGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 58, 72, 102
Bst6I CTCTTC 1 cut(s) 88
BstFNI CGCG 2 cut(s) 152, 162
BstHHI GCGC 1 cut(s) 152
BstUI CGCG 2 cut(s) 152, 162
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 66
CfoI GCGC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 89, 158, 173
CviJI RGCY 2 cut(s) 25, 155
CviKI_1 RGCY 2 cut(s) 25, 155
CviQI GTAC 3 cut(s) 89, 158, 173
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 34
FaiI YATR 5 cut(s) 28, 30, 34, 36, 144
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 126, 153
Fsp4HI GCNGC 2 cut(s) 126, 153
GlaI GCGC 1 cut(s) 151
GluI GCNGC 2 cut(s) 126, 153
HhaI GCGC 1 cut(s) 152
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 105, 179
Hpy8I GTNNAC 2 cut(s) 105, 179
HpyCH4III ACNGT 3 cut(s) 58, 72, 102
HpyCH4IV ACGT 2 cut(s) 49, 175
HpyCH4V TGCA 2 cut(s) 32, 38
HpySE526I ACGT 2 cut(s) 49, 175
HspAI GCGC 1 cut(s) 150
LpnPI CCDG 2 cut(s) 77, 114
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 112
MaeII ACGT 2 cut(s) 49, 175
MaeIII GTNAC 1 cut(s) 131
MboII GAAGA 3 cut(s) 66, 69, 75
MnlI CCTC 3 cut(s) 15, 91, 158
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 1 cut(s) 15
MvnI CGCG 2 cut(s) 152, 162
NdeI CATATG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 131
NsiI ATGCAT 1 cut(s) 34
PkrI GCNGC 2 cut(s) 127, 154
PsrI GAACNNNNNNTAC 2 cut(s) 88, 120
RsaI GTAC 3 cut(s) 90, 159, 174
RsaNI GTAC 3 cut(s) 89, 158, 173
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 126, 153
SetI ASST 4 cut(s) 52, 140, 169, 178
SfaNI GCATC 1 cut(s) 112
SgeI CNNG 5 cut(s) 104, 111, 141, 163, 173
SsiI CCGC 2 cut(s) 152, 162
TaaI ACNGT 3 cut(s) 58, 72, 102
TaiI ACGT 2 cut(s) 52, 178
TatI WGTACW 1 cut(s) 88
TauI GCSGC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.