RchiOBHm_Chr2g0118961

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
31238087 .. 31241534
3448 bp
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UTR
Exon/CDS
Intron
PRQ49171

Sequence Viewer

Length: 459 bp
ATGCTGCAAAGTTCATTGAAAAGATACAAGCAACAGATGGCTCTTGGTTTGTATGGTTCTTGGGGAGTTTGCTTCACCTATGCTGGCTGGTTTGGAATAAAGGGTTTGGTTGCTGCTGGAAGGACTTATGAAGACTGCTCTAGCATCCGTAAAGCATGTGATTTTTTGTTATCCAAAGAGCTTGCTTCTGGTGGATGGGGAGAAAGTTATCTATCATGTCAGAACAAGGTGTATTCAAATCTTCAGGATAATAGGCCACATATAGTCAATACTGCATGGGCTATGTTGGCCCTGCTTGGTGCTGGGCAGGCAAAGAGAGACCCAACTCCATTGCACCGTGCAGCTAGGGTACTAATAAATTCTCAAATGGCAAATGGAGATTTTCCCCAGAAGGTAAATCTGGCCAATTTTTCCCACAGTTCTTCACCAAAAGAGTTATATTTTCTCAACTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

16.83

Weight (kDa)

9.16

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_C PF13243 10 - 131 2.9e-17 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 358
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 1 cut(s) 351
AgsI TTSAA 2 cut(s) 19, 237
AluBI AGCT 2 cut(s) 181, 344
AluI AGCT 2 cut(s) 181, 344
Alw26I GTCTC 1 cut(s) 312
AoxI GGCC 3 cut(s) 254, 288, 402
ApeKI GCWGC 3 cut(s) 4, 113, 341
ApoI RAATTY 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 67, 417
BalI TGGCCA 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 100, 353
BccI CCATC 2 cut(s) 31, 189
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 2 cut(s) 141, 345
BisI GCNGC 3 cut(s) 5, 114, 342
BlsI GCNGC 3 cut(s) 6, 115, 343
BmgT120I GGNCC 1 cut(s) 289
BmsI GCATC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 329
BseGI GGATG 2 cut(s) 144, 200
BseMI GCAATG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 100, 353
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 3 cut(s) 256, 290, 404
BsmAI GTCTC 1 cut(s) 312
BsnI GGCC 3 cut(s) 256, 290, 404
Bso31I GGTCTC 1 cut(s) 312
BspANI GGCC 3 cut(s) 256, 290, 404
BspTNI GGTCTC 1 cut(s) 312
BsrDI GCAATG 1 cut(s) 329
Bst4CI ACNGT 3 cut(s) 338, 419, 452
BstC8I GCNNGC 3 cut(s) 85, 183, 309
BstF5I GGATG 2 cut(s) 144, 200
BstMAI GTCTC 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 287, 308
BstNSI RCATGY 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 100, 353
BstV2I GAAGAC 1 cut(s) 138
BsuRI GGCC 3 cut(s) 256, 290, 404
BtsCI GGATG 2 cut(s) 144, 200
Cac8I GCNNGC 3 cut(s) 85, 183, 309
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 350
CviAII CATG 3 cut(s) 156, 216, 276
CviJI RGCY 8 cut(s) 41, 87, 181, 256, 281, 290, 344, 404
CviKI_1 RGCY 8 cut(s) 41, 87, 181, 256, 281, 290, 344, 404
CviQI GTAC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 227
FaeI CATG 3 cut(s) 159, 219, 279
FatI CATG 3 cut(s) 155, 215, 275
Fnu4HI GCNGC 3 cut(s) 5, 114, 342
FokI GGATG 2 cut(s) 131, 207
Fsp4HI GCNGC 3 cut(s) 5, 114, 342
FspBI CTAG 2 cut(s) 141, 345
GluI GCNGC 3 cut(s) 5, 114, 342
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 3 cut(s) 256, 290, 404
Hin1II CATG 3 cut(s) 159, 219, 279
HphI GGTGA 2 cut(s) 67, 417
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 114, 385
HpyCH4III ACNGT 3 cut(s) 338, 419, 452
HpyCH4V TGCA 4 cut(s) 7, 275, 334, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 308
Hsp92II CATG 3 cut(s) 159, 219, 279
Lsp1109I GCAGC 2 cut(s) 100, 353
LweI GCATC 1 cut(s) 153
MaeI CTAG 2 cut(s) 141, 345
MboII GAAGA 3 cut(s) 143, 233, 414
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 2 cut(s) 358, 406
MluNI TGGCCA 1 cut(s) 404
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 1 cut(s) 457
Msp20I TGGCCA 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 287, 308
NlaIII CATG 3 cut(s) 159, 219, 279
NspI RCATGY 1 cut(s) 159
PkrI GCNGC 3 cut(s) 6, 115, 343
PspFI CCCAGC 1 cut(s) 302
PspPI GGNCC 1 cut(s) 289
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 457
SatI GCNGC 3 cut(s) 5, 114, 342
Sau96I GGNCC 1 cut(s) 289
SetI ASST 5 cut(s) 80, 183, 231, 346, 396
SfaNI GCATC 1 cut(s) 153
Sse9I AATT 2 cut(s) 358, 406
SspMI CTAG 2 cut(s) 141, 345
TaaI ACNGT 3 cut(s) 338, 419, 452
TasI AATT 2 cut(s) 358, 406
Tru1I TTAA 1 cut(s) 457
Tru9I TTAA 1 cut(s) 457
TseI GCWGC 3 cut(s) 4, 113, 341
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 137
XapI RAATTY 1 cut(s) 358
XceI RCATGY 1 cut(s) 159
XspI CTAG 2 cut(s) 141, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.