pycom03g07100

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
5648154 .. 5648571
418 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07100.1

Sequence Viewer

Length: 261 bp
ATGCAGAGTAAAAATGGCGGGGTATCAGTATGGGAGCCAGCAGGATCTCTATCATGGATGGAGTTGCTTAATCCAGTGGAATTTCTCGAGGGCGTGGTCGTTGAGCATGAGCATGTTGAGTGCACCTCCTCTGCATTACAAACTCTAGTTTTGTTTAAGAAGTTACATCCTGAGTATCAGAAAAAAGAGATAGAAAAGTTCATTGTTAGTGCCGTACAATTTCTTGAAGACGCACAAAACCCCAATGGCTCATGGTATTAA

Protein Analysis

87

Amino Acids

9.76

Weight (kDa)

4.87

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 1 cut(s) 216
AgsI TTSAA 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 125
Alw44I GTGCAC 1 cut(s) 121
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 197
BfaI CTAG 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BsaBI GATNNNNATC 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 49
BseGI GGATG 2 cut(s) 63, 166
BseJI GATNNNNATC 1 cut(s) 49
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 118
BseSI GKGCMC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 74
BssMI GATC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 63, 166
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtsCI GGATG 2 cut(s) 63, 166
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 39
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 215
CviAII CATG 4 cut(s) 54, 107, 113, 252
CviJI RGCY 2 cut(s) 37, 249
CviKI_1 RGCY 2 cut(s) 37, 249
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 86
FaeI CATG 4 cut(s) 57, 110, 116, 255
FaiI YATR 5 cut(s) 31, 55, 108, 114, 253
FatI CATG 4 cut(s) 53, 106, 112, 251
FauI CCCGC 1 cut(s) 11
FokI GGATG 2 cut(s) 70, 153
FspBI CTAG 1 cut(s) 146
HgaI GACGC 1 cut(s) 239
Hin1II CATG 4 cut(s) 57, 110, 116, 255
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 3 cut(s) 86, 170, 224
Hpy8I GTNNAC 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 4, 123, 134
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 4 cut(s) 57, 110, 116, 255
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 27, 51, 87, 183
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 162
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 1 cut(s) 239
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 80, 218
MnlI CCTC 3 cut(s) 82, 136, 139
MseI TTAA 3 cut(s) 69, 156, 259
MslI CAYNNNNRTG 1 cut(s) 111
NdeII GATC 1 cut(s) 44
NlaIII CATG 4 cut(s) 57, 110, 116, 255
NlaIV GGNNCC 1 cut(s) 36
NspI RCATGY 1 cut(s) 116
PaeR7I CTCGAG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 3 cut(s) 69, 156, 259
Sau3AI GATC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 125
SetI ASST 1 cut(s) 128
Sfr274I CTCGAG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 80, 218
SsiI CCGC 1 cut(s) 18
SspMI CTAG 1 cut(s) 146
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 80, 218
Tru1I TTAA 3 cut(s) 69, 156, 259
Tru9I TTAA 3 cut(s) 69, 156, 259
TscAI CASTG 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 1 cut(s) 81
VneI GTGCAC 1 cut(s) 121
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 116
XhoI CTCGAG 1 cut(s) 86
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.