Rw2G027640

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000689
Physical Location & Seq
Reverse (-)
43630945 .. 43640418
9474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027640.1

Sequence Viewer

Length: 573 bp
ATGGCTAGATATGTTGAGTGTACATCAGCAGCAATTCAAGCACTCACGCTATTTAAGAAATTATATCCTGGACAGAGGAGGGAAGAAATAGAAAACTGTATTGCTAATGCTGCAAAGTTCATTGAAAAGATACAAGCAACAGATGGCTCTTGGTATGGTTCTTGGGGAGTCTGCTTCACCTATGCTGGCTGGTTTGGAATAAAGGGTTTGGTTGCTGCTGGAAGGACTTATGAAGACTGCTCTAGCATCCGTAAAGCATGTGATTTTTTGTTATCCAAAGAGCTTGCTTCTGGTGGATGGGGAGAAAGTTATCTATCATGTCAGAACAAGGTGTATTCAAATCTTCAGGATAATAGGCCACATATAGTCAATACTGCATGGGCTCTGCTGGCCCTGCTTGGTGCTGGGCAGGCAAAGAGAGACCCAACTCCATTGCACCGTGCAGCTAGGGTACTAATAAATTCTCAAATGGCAAATGGAGATTTTCCCCAGAAGGAGATCATGGGAGTTTTTAACAAGAACTGTATGATCTATTACAATGGACGTTGCAGCGACAATCCTAATGGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

190

Amino Acids

21.07

Weight (kDa)

8.76

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_C PF13243 29 - 180 1.6e-25 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 2 cut(s) 22, 453
AgsI TTSAA 3 cut(s) 38, 125, 339
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 283, 446
AluI AGCT 2 cut(s) 283, 446
Alw26I GTCTC 1 cut(s) 414
AoxI GGCC 2 cut(s) 356, 390
ApeKI GCWGC 5 cut(s) 29, 110, 215, 443, 549
ApoI RAATTY 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 169
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 5 cut(s) 41, 97, 202, 455, 561
BccI CCATC 2 cut(s) 137, 291
BciT130I CCWGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 3 cut(s) 6, 243, 447
BisI GCNGC 5 cut(s) 30, 111, 216, 444, 550
BlsI GCNGC 5 cut(s) 31, 112, 217, 445, 551
Bme1390I CCNGG 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 391
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 431
BseBI CCWGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 246, 302
BseMI GCAATG 1 cut(s) 431
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 5 cut(s) 41, 97, 202, 455, 561
BseYI CCCAGC 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 462
BshFI GGCC 2 cut(s) 358, 392
BsmAI GTCTC 1 cut(s) 414
BsnI GGCC 2 cut(s) 358, 392
Bso31I GGTCTC 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 20
Bsp143I GATC 2 cut(s) 498, 528
BspANI GGCC 2 cut(s) 358, 392
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 431
BsrGI TGTACA 1 cut(s) 20
BssMI GATC 2 cut(s) 498, 528
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 3 cut(s) 98, 440, 524
BstAUI TGTACA 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 187, 285, 390, 411
BstF5I GGATG 2 cut(s) 246, 302
BstKTI GATC 2 cut(s) 501, 531
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 2 cut(s) 498, 528
BstMWI GCNNNNNNNGC 5 cut(s) 38, 110, 389, 394, 410
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 67
BstV1I GCAGC 5 cut(s) 41, 97, 202, 455, 561
BstV2I GAAGAC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 358, 392
BtsCI GGATG 2 cut(s) 246, 302
Cac8I GCNNGC 4 cut(s) 187, 285, 390, 411
Cfr13I GGNCC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 21, 452
CviAII CATG 4 cut(s) 258, 318, 378, 502
CviJI RGCY 8 cut(s) 5, 147, 189, 283, 358, 383, 392, 446
CviKI_1 RGCY 8 cut(s) 5, 147, 189, 283, 358, 383, 392, 446
CviQI GTAC 2 cut(s) 21, 452
DpnI GATC 2 cut(s) 500, 530
DpnII GATC 2 cut(s) 498, 528
Eco24I GRGCYC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 385
FaeI CATG 4 cut(s) 261, 321, 381, 505
FatI CATG 4 cut(s) 257, 317, 377, 501
Fnu4HI GCNGC 5 cut(s) 30, 111, 216, 444, 550
FokI GGATG 2 cut(s) 233, 309
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 5 cut(s) 30, 111, 216, 444, 550
FspBI CTAG 3 cut(s) 6, 243, 447
GluI GCNGC 5 cut(s) 30, 111, 216, 444, 550
GsaI CCCAGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 358, 392
Hin1II CATG 4 cut(s) 261, 321, 381, 505
HinfI GANTC 1 cut(s) 168
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 2 cut(s) 216, 487
HpyCH4III ACNGT 3 cut(s) 98, 440, 524
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 5 cut(s) 113, 377, 436, 443, 549
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 110, 389, 394, 410
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 4 cut(s) 261, 321, 381, 505
Kzo9I GATC 2 cut(s) 498, 528
Lsp1109I GCAGC 5 cut(s) 41, 97, 202, 455, 561
LweI GCATC 1 cut(s) 255
MaeI CTAG 3 cut(s) 6, 243, 447
MaeII ACGT 1 cut(s) 544
MalI GATC 2 cut(s) 500, 530
MboI GATC 2 cut(s) 498, 528
MboII GAAGA 3 cut(s) 95, 245, 335
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 3 cut(s) 33, 59, 460
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 2 cut(s) 69, 72
MseI TTAA 2 cut(s) 54, 513
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 5 cut(s) 38, 110, 389, 394, 410
NdeII GATC 2 cut(s) 498, 528
NlaIII CATG 4 cut(s) 261, 321, 381, 505
NspI RCATGY 1 cut(s) 261
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 5 cut(s) 31, 112, 217, 445, 551
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 1 cut(s) 67
PspPI GGNCC 1 cut(s) 391
RsaI GTAC 2 cut(s) 22, 453
RsaNI GTAC 2 cut(s) 21, 452
SaqAI TTAA 2 cut(s) 54, 513
SatI GCNGC 5 cut(s) 30, 111, 216, 444, 550
Sau3AI GATC 2 cut(s) 498, 528
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 385
SetI ASST 5 cut(s) 182, 285, 333, 448, 547
SfaNI GCATC 1 cut(s) 255
Sse9I AATT 3 cut(s) 33, 59, 460
SspMI CTAG 3 cut(s) 6, 243, 447
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 3 cut(s) 98, 440, 524
TaiI ACGT 1 cut(s) 547
TasI AATT 3 cut(s) 33, 59, 460
TatI WGTACW 1 cut(s) 20
Tru1I TTAA 2 cut(s) 54, 513
Tru9I TTAA 2 cut(s) 54, 513
TseI GCWGC 5 cut(s) 29, 110, 215, 443, 549
TspDTI ATGAA 2 cut(s) 109, 246
TspGWI ACGGA 1 cut(s) 239
XapI RAATTY 1 cut(s) 460
XceI RCATGY 1 cut(s) 261
XspI CTAG 3 cut(s) 6, 243, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.