Rroxscaffold_4G00294300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000689
Physical Location & Seq
Forward (+)
14415578 .. 14422107
6530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294300.1

Sequence Viewer

Length: 480 bp
ATGCCTTTAGGATACAATGAAGCCCAGCCCAATGCTGTTGTTGATCGGCGTCTTGCACTTACGAAGATCAACCTAAACACTCATAAGAAGGTTTACAAGATGGCTCAAGGGGAATTGTCAAATATGCCTTTAGGATACAATGAAGCCCAGCACAATGCTGTTGTTGATCGGCGTCTTTCACTTACGAAGATCAACCTAAACACTCATAAGAAGGTTTACAAGATGGCTCAAGAATTTGTTTGCGACGATATCGACACTAAACAAAGCCTCGCAACCGAACGCTCTCTCCTCCAAAATTTACTCTCCTCTCGTCCCGACTATTCCAAGCCTACGAGGACGATGCCAATGTCAAGTTGGTCATTCTCAAAGGAAAAGGAAGAGCATTTTGTGCCGGCGGTGATGTGGCAGCGGTGGCTCGTCATCTTTTTGAAGGCAACTAGAGATTTGGCGCCCAACATGGTAAGAGAGTGTATACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.41

Weight (kDa)

9.52

Isoelectric Point (pI)

57.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 448
AccI GTMKAC 1 cut(s) 472
AciI CCGC 2 cut(s) 395, 409
AcsI RAATTY 2 cut(s) 233, 295
AcyI GRCGYC 3 cut(s) 49, 172, 449
AgsI TTSAA 1 cut(s) 430
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
ApeKI GCWGC 1 cut(s) 406
ApoI RAATTY 2 cut(s) 233, 295
AspLEI GCGC 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 409
BanI GGYRCC 1 cut(s) 448
BbvI GCAGC 1 cut(s) 418
BccI CCATC 2 cut(s) 94, 217
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciVI GTATCC 2 cut(s) 5, 128
BfaI CTAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 452
BfuI GTATCC 2 cut(s) 5, 128
BisI GCNGC 1 cut(s) 407
BlsI GCNGC 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 450
BmsI GCATC 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 90, 213
BsaHI GRCGYC 3 cut(s) 49, 172, 449
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bse118I RCCGGY 1 cut(s) 391
BseRI GAGGAG 2 cut(s) 278, 295
BseXI GCAGC 1 cut(s) 418
BseYI CCCAGC 2 cut(s) 24, 147
BshNI GGYRCC 1 cut(s) 448
BsiSI CCGG 1 cut(s) 392
BslFI GGGAC 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 297
Bsp143I GATC 4 cut(s) 43, 66, 166, 189
BspACI CCGC 2 cut(s) 395, 409
BspLI GGNNCC 1 cut(s) 450
BspQI GCTCTTC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 391
BssMI GATC 4 cut(s) 43, 66, 166, 189
BssNAI GTATAC 1 cut(s) 473
BssNI GRCGYC 3 cut(s) 49, 172, 449
Bst1107I GTATAC 1 cut(s) 473
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 3 cut(s) 49, 172, 449
BstAPI GCANNNNNTGC 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 1 cut(s) 477
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 4 cut(s) 46, 69, 169, 192
BstMBI GATC 4 cut(s) 43, 66, 166, 189
BstMWI GCNNNNNNNGC 2 cut(s) 388, 412
BstV1I GCAGC 1 cut(s) 418
BstZ17I GTATAC 1 cut(s) 473
BsuI GTATCC 2 cut(s) 5, 128
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 391
CseI GACGC 2 cut(s) 38, 161
CviAII CATG 1 cut(s) 457
CviJI RGCY 8 cut(s) 23, 28, 104, 146, 227, 267, 328, 415
CviKI_1 RGCY 8 cut(s) 23, 28, 104, 146, 227, 267, 328, 415
DdeI CTNAG 1 cut(s) 477
DinI GGCGCC 1 cut(s) 450
DpnI GATC 4 cut(s) 45, 68, 168, 191
DpnII GATC 4 cut(s) 43, 66, 166, 189
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 250
EcoRV GATATC 1 cut(s) 250
EgeI GGCGCC 1 cut(s) 450
EheI GGCGCC 1 cut(s) 450
FaeI CATG 1 cut(s) 460
FaiI YATR 5 cut(s) 84, 125, 207, 458, 473
FaqI GGGAC 1 cut(s) 297
FatI CATG 1 cut(s) 456
FblI GTMKAC 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 407
Fsp4HI GCNGC 1 cut(s) 407
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 407
GsaI CCCAGC 2 cut(s) 28, 151
HaeII RGCGCY 1 cut(s) 452
HapII CCGG 1 cut(s) 392
HgaI GACGC 2 cut(s) 38, 161
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 3 cut(s) 49, 172, 449
Hin1II CATG 1 cut(s) 460
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HpaII CCGG 1 cut(s) 392
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 3 cut(s) 94, 217, 473
Hpy188III TCNNGA 2 cut(s) 230, 314
Hpy8I GTNNAC 3 cut(s) 94, 217, 473
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 82, 205, 424
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 2 cut(s) 388, 412
HpyF3I CTNAG 1 cut(s) 477
Hsp92I GRCGYC 3 cut(s) 49, 172, 449
Hsp92II CATG 1 cut(s) 460
HspAI GCGC 1 cut(s) 449
KasI GGCGCC 1 cut(s) 448
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 4 cut(s) 43, 66, 166, 189
LguI GCTCTTC 1 cut(s) 372
LpnPI CCDG 3 cut(s) 38, 161, 405
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 1 cut(s) 330
MaeI CTAG 1 cut(s) 438
MalI GATC 4 cut(s) 45, 68, 168, 191
MboI GATC 4 cut(s) 43, 66, 166, 189
MboII GAAGA 3 cut(s) 76, 199, 389
MluCI AATT 3 cut(s) 113, 233, 295
Mly113I GGCGCC 1 cut(s) 449
MnlI CCTC 4 cut(s) 278, 299, 316, 327
MroNI GCCGGC 1 cut(s) 391
MspA1I CMGCKG 1 cut(s) 409
MspI CCGG 1 cut(s) 392
MwoI GCNNNNNNNGC 2 cut(s) 388, 412
NaeI GCCGGC 1 cut(s) 393
NarI GGCGCC 1 cut(s) 449
NdeII GATC 4 cut(s) 43, 66, 166, 189
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 1 cut(s) 460
NlaIV GGNNCC 1 cut(s) 450
PciSI GCTCTTC 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 393
PkrI GCNGC 1 cut(s) 408
PluTI GGCGCC 1 cut(s) 452
PspFI CCCAGC 2 cut(s) 24, 147
PspN4I GGNNCC 1 cut(s) 450
SapI GCTCTTC 1 cut(s) 372
SatI GCNGC 1 cut(s) 407
Sau3AI GATC 4 cut(s) 43, 66, 166, 189
SetI ASST 5 cut(s) 75, 93, 198, 216, 478
SfaNI GCATC 1 cut(s) 330
SfoI GGCGCC 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 105, 228
SmoI CTYRAG 2 cut(s) 105, 228
Sse9I AATT 3 cut(s) 113, 233, 295
SsiI CCGC 2 cut(s) 395, 409
SspDI GGCGCC 1 cut(s) 448
SspMI CTAG 1 cut(s) 438
TaqI TCGA 1 cut(s) 252
TasI AATT 3 cut(s) 113, 233, 295
TseI GCWGC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 33, 156
XapI RAATTY 2 cut(s) 233, 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 472
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.