Rh4AG118000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000689
Physical Location & Seq
Forward (+)
25397124 .. 25405649
8526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG118000.1

Sequence Viewer

Length: 429 bp
ATGAATTCAGGAAACACCTTCAGAGGAGGAACTAGGGGGAGAGGTTTGAAGTGGAAACAGAAAAAAAGAGATACTTTTGCCCTCATCCCTGTCCAGAGGAGAATTTGGATTCATTCGCTGTCAAAACATTTAGTTCCTCCAATTCAGAATTCAGAGAAAGTTGATTTCACAAACCTTATATTTTCCAAACATTGTAAATGTTCCTCTCTTCAAGGGATGCTCAATGGAATTCATCAATCAGATTACCCTGAAGACCAGATCTGCCTATCCGGAGTCCAGAAGCGCATACATTATGTCTTTCACAATCTCAGACTCACCGATCTCAATCAATCTCTGTCAAGACTTGGTCGAAAAGAGGAAATCTGTCGTTCTCACTCAAAAACAAAGGTTGGACTAGCGAGAAGTTTTTTAAGGATGGATTGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.42

Weight (kDa)

10.26

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 269
AcsI RAATTY 4 cut(s) 4, 102, 148, 228
AcuI CTGAAG 2 cut(s) 4, 270
AgsI TTSAA 2 cut(s) 49, 212
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
Aor13HI TCCGGA 1 cut(s) 269
ApoI RAATTY 4 cut(s) 4, 102, 148, 228
AspLEI GCGC 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 258
BccI CCATC 1 cut(s) 409
BfaI CTAG 2 cut(s) 33, 395
BglII AGATCT 1 cut(s) 258
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 324
BseAI TCCGGA 1 cut(s) 269
BseGI GGATG 3 cut(s) 84, 222, 420
BseJI GATNNNNATC 1 cut(s) 324
BseMII CTCAG 1 cut(s) 322
BseRI GAGGAG 2 cut(s) 39, 112
BsiSI CCGG 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 2 cut(s) 258, 319
BspCNI CTCAG 1 cut(s) 321
BspEI TCCGGA 1 cut(s) 269
BssMI GATC 2 cut(s) 258, 319
Bst6I CTCTTC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 3 cut(s) 84, 222, 420
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 2 cut(s) 261, 322
BstMBI GATC 2 cut(s) 258, 319
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BtsCI GGATG 3 cut(s) 84, 222, 420
CfoI GCGC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 308
DpnI GATC 2 cut(s) 260, 321
DpnII GATC 2 cut(s) 258, 319
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 4, 270
EcoRI GAATTC 3 cut(s) 4, 148, 228
FaiI YATR 3 cut(s) 179, 287, 294
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FokI GGATG 2 cut(s) 71, 229
FspBI CTAG 2 cut(s) 33, 395
GlaI GCGC 1 cut(s) 284
HapII CCGG 1 cut(s) 270
HhaI GCGC 1 cut(s) 285
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 3 cut(s) 109, 273, 312
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 307
Hpy188I TCNGA 5 cut(s) 23, 147, 154, 241, 311
Hpy188III TCNNGA 5 cut(s) 9, 94, 270, 277, 339
HpyAV CCTTC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 308
HspAI GCGC 1 cut(s) 283
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 2 cut(s) 258, 319
LpnPI CCDG 6 cut(s) 102, 107, 261, 269, 283, 290
LweI GCATC 1 cut(s) 207
MaeI CTAG 2 cut(s) 33, 395
MalI GATC 2 cut(s) 260, 321
MboI GATC 2 cut(s) 258, 319
MboII GAAGA 2 cut(s) 200, 263
MflI RGATCY 1 cut(s) 258
MluCI AATT 5 cut(s) 4, 102, 141, 148, 228
MlyI GAGTC 2 cut(s) 282, 306
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 8 cut(s) 17, 20, 35, 90, 92, 147, 214, 349
MroI TCCGGA 1 cut(s) 269
MseI TTAA 1 cut(s) 410
MspI CCGG 1 cut(s) 270
NdeII GATC 2 cut(s) 258, 319
PfeI GAWTC 1 cut(s) 109
PflFI GACNNNGTC 1 cut(s) 345
PleI GAGTC 2 cut(s) 281, 306
PpsI GAGTC 2 cut(s) 281, 306
PsuI RGATCY 1 cut(s) 258
PsyI GACNNNGTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 410
Sau3AI GATC 2 cut(s) 258, 319
SchI GAGTC 2 cut(s) 282, 306
SetI ASST 4 cut(s) 20, 46, 177, 390
SfaNI GCATC 1 cut(s) 207
Sse9I AATT 5 cut(s) 4, 102, 141, 148, 228
SspMI CTAG 2 cut(s) 33, 395
TaqI TCGA 1 cut(s) 349
TasI AATT 5 cut(s) 4, 102, 141, 148, 228
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 17, 101, 221
Tth111I GACNNNGTC 1 cut(s) 345
XapI RAATTY 4 cut(s) 4, 102, 148, 228
XspI CTAG 2 cut(s) 33, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.