Rh7DG380300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000689
Physical Location & Seq
Reverse (-)
51653645 .. 51663492
9848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG380300.1

Sequence Viewer

Length: 549 bp
ATGGAATGTCAACCACACTACGTATTTGGAAAGCTTAATGGGGAGTTGGCAAATGCAGAGAAGAGAGCAAGGGCTGCAGTAGCAGCCACAAATCCAGCTGATTGGTTCCTTTCAACGGGTGTCAAATGTAAACGAGTGGCTAGAAGTATTGGTCCTTTAGGCAATATCTGCTATGGCCTGGGGTACAGAATCTTGCCTAAAGGGCATATTTTATTCCCCGTGGAGCTGATCCAATCCCAACAGTTGATTGGAGATAATCCATCACCCATGAAGTTGCTACCTCTAACATACTCCCAATCCCATAGGCTTACCATCAACAAGTATTTTGCTTTTGAAACTGCTGGGAAGCTTCTTTGGGCTCTCACTGAGTACAGGAAAAGACACTATCAAGAGTTTATGAGTAAATATCTCAACAACAGAAGCAGAAATAAGCCCAAATCAGTCTTCAACAACAAAAAGAAAAGGCTGATGAGGTTGAACAAGAGAAGCAAAAGAGGCAAGAAAGGGAAAGACAACGGCAAGAAGCTCGGCTTGCGCTTGATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.86

Weight (kDa)

10.49

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 223
AfaI GTAC 2 cut(s) 185, 371
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 4 cut(s) 114, 335, 448, 478
AjnI CCWGG 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 5 cut(s) 34, 98, 226, 349, 526
AluI AGCT 5 cut(s) 34, 98, 226, 349, 526
AlwI GGATC 1 cut(s) 223
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 74, 83
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 255
AvaII GGWCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 436
BbvI GCAGC 2 cut(s) 61, 95
BccI CCATC 2 cut(s) 268, 320
BceAI ACGGC 1 cut(s) 532
BcgI CGANNNNNNTGC 2 cut(s) 508, 542
BciT130I CCWGG 1 cut(s) 179
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 202
BisI GCNGC 2 cut(s) 75, 84
BlsI GCNGC 2 cut(s) 76, 85
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 178, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 178, 219
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 61, 95
BseYI CCCAGC 1 cut(s) 341
BshFI GGCC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 115
BsnI GGCC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 1 cut(s) 228
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 107
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 178, 219
BssMI GATC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 56
BstAPI GCANNNNNTGC 2 cut(s) 74, 168
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 7 cut(s) 74, 80, 83, 168, 202, 495, 532
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 75
BstSNI TACGTA 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 61, 95
BstV2I GAAGAC 1 cut(s) 436
BstXI CCANNNNNNTGG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 533
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 184, 370
CviAII CATG 1 cut(s) 268
CviQI GTAC 2 cut(s) 184, 370
DdeI CTNAG 1 cut(s) 366
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco105I TACGTA 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 361
FaeI CATG 1 cut(s) 271
FaiI YATR 7 cut(s) 174, 207, 269, 289, 303, 398, 547
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 75, 84
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 2 cut(s) 75, 84
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 536
GluI GCNGC 2 cut(s) 75, 84
GsaI CCCAGC 1 cut(s) 345
HaeIII GGCC 1 cut(s) 177
HhaI GCGC 1 cut(s) 537
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HindIII AAGCTT 2 cut(s) 32, 347
HinfI GANTC 1 cut(s) 189
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 2 cut(s) 11, 131
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 2 cut(s) 11, 131
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 56, 77
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 80, 83, 168, 202, 495, 532
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 535
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 5 cut(s) 108, 164, 191, 327, 358
Lsp1109I GCAGC 2 cut(s) 61, 95
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 21
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 2 cut(s) 73, 436
MhlI GDGCHC 1 cut(s) 361
MnlI CCTC 3 cut(s) 291, 465, 488
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 7 cut(s) 74, 80, 83, 168, 202, 495, 532
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 107
NmeAIII GCCGAG 1 cut(s) 507
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 2 cut(s) 76, 85
Ppu21I YACGTR 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 152
PstI CTGCAG 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 185, 371
RsaNI GTAC 2 cut(s) 184, 370
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 75, 84
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 361
SetI ASST 8 cut(s) 24, 36, 100, 228, 283, 351, 476, 528
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 22
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 1 cut(s) 24
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 370
TseI GCWGC 2 cut(s) 74, 83
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.