Rmu_sc0000048.1_g000034

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000048.1
OG0000689
Physical Location & Seq
Forward (+)
156048 .. 156869
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000048.1_g000034.1.cds

Sequence Viewer

Length: 366 bp
atgcttgcttgttgggctgaagatccaaatgaggactatttcaagaagcatcttgcaaggatcccggattatttatgggttgctgaagataggatgaagatgcaaagttttggcagtcagcagtgggacactggttttgccattcaagctttgcttgctagtaatctcacagatgaaattgggccaacactcgctagaagacatgacttcataaaaaaatctcaggaaatcactggagtcttcatgaagaactgcatgcttcattatgcagcttatagaaatatatacccactctgggctcttgcagaataccgcaagcgtgttccattgccttcccaggccagaattgttcaccctattatgtag

Protein Analysis

121

Amino Acids

14.19

Weight (kDa)

8.58

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 313
AclWI GGATC 3 cut(s) 17, 55, 68
AcuI CTGAAG 2 cut(s) 39, 105
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 2 cut(s) 43, 146
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 2 cut(s) 149, 272
AluI AGCT 2 cut(s) 149, 272
AlwI GGATC 3 cut(s) 17, 55, 68
AoxI GGCC 2 cut(s) 182, 339
ApeKI GCWGC 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 344
BamHI GGATCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 205, 232
BbvI GCAGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 1 cut(s) 65
BfaI CTAG 2 cut(s) 159, 195
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 65, 338
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 2 cut(s) 65, 338
BmsI GCATC 2 cut(s) 58, 90
BpiI GAAGAC 2 cut(s) 205, 232
BpmI CTGGAG 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 136, 238
Bse3DI GCAATG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 2 cut(s) 136, 238
BseXI GCAGC 1 cut(s) 281
BshFI GGCC 2 cut(s) 184, 341
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 184, 341
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 2 cut(s) 22, 60
BspACI CCGC 1 cut(s) 313
BspANI GGCC 2 cut(s) 184, 341
BspCNI CTCAG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 3 cut(s) 17, 55, 68
BsrDI GCAATG 1 cut(s) 326
BsrI ACTGG 2 cut(s) 136, 238
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 2 cut(s) 22, 60
Bst2UI CCWGG 1 cut(s) 338
BstC8I GCNNGC 4 cut(s) 6, 156, 257, 317
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 2 cut(s) 25, 63
BstMBI GATC 2 cut(s) 22, 60
BstMWI GCNNNNNNNGC 3 cut(s) 14, 146, 155
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 2 cut(s) 63, 336
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 2 cut(s) 205, 232
BstX2I RGATCY 2 cut(s) 22, 60
BstYI RGATCY 2 cut(s) 22, 60
BsuRI GGCC 2 cut(s) 184, 341
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 3 cut(s) 128, 129, 231
Cac8I GCNNGC 4 cut(s) 6, 156, 257, 317
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 182
CviAII CATG 3 cut(s) 203, 244, 256
CviJI RGCY 6 cut(s) 17, 149, 184, 272, 299, 341
CviKI_1 RGCY 6 cut(s) 17, 149, 184, 272, 299, 341
DdeI CTNAG 1 cut(s) 222
DpnI GATC 2 cut(s) 24, 62
DpnII GATC 2 cut(s) 22, 60
Eco24I GRGCYC 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 39, 105
EcoRII CCWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 301
FaeI CATG 3 cut(s) 206, 247, 259
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 202, 243, 255
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 159, 195
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 184, 341
HapII CCGG 1 cut(s) 65
Hin1II CATG 3 cut(s) 206, 247, 259
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 237
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 352
Hpy188III TCNNGA 3 cut(s) 43, 224, 244
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 342
HpyCH4V TGCA 5 cut(s) 56, 103, 255, 269, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 146, 155
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 3 cut(s) 206, 247, 259
Kzo9I GATC 2 cut(s) 22, 60
LpnPI CCDG 8 cut(s) 78, 117, 209, 219, 280, 323, 350, 355
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 2 cut(s) 58, 90
MaeI CTAG 2 cut(s) 159, 195
MalI GATC 2 cut(s) 24, 62
MboI GATC 2 cut(s) 22, 60
MboII GAAGA 6 cut(s) 32, 98, 109, 210, 232, 259
MflI RGATCY 2 cut(s) 22, 60
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 2 cut(s) 177, 345
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 1 cut(s) 25
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 65, 338
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 14, 146, 155
NciI CCSGG 1 cut(s) 65
NdeII GATC 2 cut(s) 22, 60
NlaIII CATG 3 cut(s) 206, 247, 259
NlaIV GGNNCC 1 cut(s) 62
NspI RCATGY 1 cut(s) 259
PaeI GCATGC 1 cut(s) 259
PagI TCATGA 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 2 cut(s) 22, 60
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 22, 60
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 2 cut(s) 65, 338
SduI GDGCHC 1 cut(s) 301
SetI ASST 2 cut(s) 151, 274
SfaNI GCATC 2 cut(s) 58, 90
SphI GCATGC 1 cut(s) 259
Sse9I AATT 2 cut(s) 177, 345
SsiI CCGC 1 cut(s) 313
SspMI CTAG 2 cut(s) 159, 195
StyD4I CCNGG 2 cut(s) 63, 336
TasI AATT 2 cut(s) 177, 345
TscAI CASTG 3 cut(s) 128, 136, 238
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 6 cut(s) 110, 189, 199, 232, 251, 260
TspRI CASTG 3 cut(s) 128, 136, 238
XceI RCATGY 1 cut(s) 259
XspI CTAG 2 cut(s) 159, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.