MD09G1245800.v1.1

oxidosqualene cyclase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000689
Physical Location & Seq
Reverse (-)
31449239 .. 31449582
344 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1245800.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGCAGATGGTTCATGGTACGGGAATTGGGGAGTTTGCTACACATATGGTACCTGGTTTGCTCTTGGGGGGCTAACCGCTGCTGGCAAGACTTTCAGCAATTGTGCAGCCATGAGCAAAGCCATTAGTTTTTTGCTCGCAATCCAGAAAGAGAACGGTGGTTGGGGAGAGAGCTACCTTTCATGTCCAAAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110
Pfam Domains
Protein Families
Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

66

Amino Acids

7.0

Weight (kDa)

8.53

Isoelectric Point (pI)

21.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_C PF13243 2 - 60 4.6e-17 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 1 cut(s) 78
AfaI GTAC 2 cut(s) 20, 52
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 80, 107
Asp718I GGTACC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 67, 119
BccI CCATC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 55
BisI GCNGC 2 cut(s) 81, 108
BlsI GCNGC 2 cut(s) 82, 109
Bme1390I CCNGG 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 67, 119
BsgI GTGCAG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 50
BspACI CCGC 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 85, 138
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 67, 119
Cac8I GCNNGC 2 cut(s) 85, 138
CsiI ACCWGGT 1 cut(s) 53
Csp6I GTAC 2 cut(s) 19, 51
CviAII CATG 3 cut(s) 15, 112, 183
CviJI RGCY 4 cut(s) 73, 110, 122, 174
CviKI_1 RGCY 4 cut(s) 73, 110, 122, 174
CviQI GTAC 2 cut(s) 19, 51
EcoRII CCWGG 1 cut(s) 53
FaeI CATG 3 cut(s) 18, 115, 186
FaiI YATR 5 cut(s) 16, 46, 48, 113, 184
FatI CATG 3 cut(s) 14, 111, 182
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 81, 108
Fsp4HI GCNGC 2 cut(s) 81, 108
GluI GCNGC 2 cut(s) 81, 108
Hin1II CATG 3 cut(s) 18, 115, 186
Hpy188III TCNNGA 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 107
Hsp92II CATG 3 cut(s) 18, 115, 186
KpnI GGTACC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 40, 67, 69, 158
Lsp1109I GCAGC 2 cut(s) 67, 119
MabI ACCWGGT 1 cut(s) 53
MfeI CAATTG 1 cut(s) 100
MluCI AATT 2 cut(s) 25, 100
MspA1I CMGCKG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 55
NdeI CATATG 1 cut(s) 46
NlaIII CATG 3 cut(s) 18, 115, 186
NlaIV GGNNCC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 82, 109
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 52
RsaI GTAC 2 cut(s) 20, 52
RsaNI GTAC 2 cut(s) 19, 51
SatI GCNGC 2 cut(s) 81, 108
ScrFI CCNGG 1 cut(s) 55
SetI ASST 4 cut(s) 56, 176, 180, 197
SexAI ACCWGGT 1 cut(s) 53
Sse9I AATT 2 cut(s) 25, 100
SsiI CCGC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 158
TasI AATT 2 cut(s) 25, 100
TseI GCWGC 2 cut(s) 80, 107
TspDTI ATGAA 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.