Rroxscaffold_7G00156420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000689
Physical Location & Seq
Reverse (-)
278645 .. 283033
4389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156420.1

Sequence Viewer

Length: 267 bp
ATGGACATGGGAACAAAGAAAAGTACTAAGCGCAGGCCCAACATGGAGCTCTGTCCACCATCTCCGGATCTGCATGGAAATCAATTCCTACTGAACTTCAAGACCGTGATGATACATACCGTCTTAAAAGTTCAGCGATCACATTCCACGAAGCCTCTAGGATACAATGAAGCCCAGCACAATGCTATTGTTGATCGGCGTCTTGCACTTACCAAGATCAACCTAATCACTCAAAAGAAGGTTTACAAGATGGCTCAAAGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.15

Weight (kDa)

10.2

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 64
AclWI GGATC 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 51
AlwI GGATC 1 cut(s) 75
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 51
BccI CCATC 2 cut(s) 67, 244
BciVI GTATCC 1 cut(s) 155
BfaI CTAG 2 cut(s) 158, 265
BfuI GTATCC 1 cut(s) 155
BmcAI AGTACT 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 174
BshFI GGCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 65
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 4 cut(s) 67, 137, 193, 216
BspANI GGCC 1 cut(s) 37
BspEI TCCGGA 1 cut(s) 64
BspPI GGATC 1 cut(s) 75
BssMI GATC 4 cut(s) 67, 137, 193, 216
BssNI GRCGYC 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 106, 121
BstACI GRCGYC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 4 cut(s) 70, 140, 196, 219
BstMBI GATC 4 cut(s) 67, 137, 193, 216
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 24
CviAII CATG 3 cut(s) 7, 43, 74
CviJI RGCY 5 cut(s) 37, 49, 154, 173, 254
CviKI_1 RGCY 5 cut(s) 37, 49, 154, 173, 254
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 27
DpnI GATC 4 cut(s) 69, 139, 195, 218
DpnII GATC 4 cut(s) 67, 137, 193, 216
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 51
FaeI CATG 3 cut(s) 10, 46, 77
FaiI YATR 4 cut(s) 8, 44, 75, 117
FatI CATG 3 cut(s) 6, 42, 73
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 2 cut(s) 158, 265
GlaI GCGC 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 37
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 3 cut(s) 10, 46, 77
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 56, 244
Hpy188III TCNNGA 2 cut(s) 65, 100
Hpy8I GTNNAC 2 cut(s) 56, 244
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 106, 121
HpyCH4V TGCA 2 cut(s) 73, 206
HpyF3I CTNAG 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 3 cut(s) 10, 46, 77
HspAI GCGC 1 cut(s) 31
Kpn2I TCCGGA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 67, 137, 193, 216
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 3 cut(s) 19, 78, 188
MaeI CTAG 2 cut(s) 158, 265
MaeIII GTNAC 1 cut(s) 260
MalI GATC 4 cut(s) 69, 139, 195, 218
MboI GATC 4 cut(s) 67, 137, 193, 216
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 83
MnlI CCTC 1 cut(s) 165
MroI TCCGGA 1 cut(s) 64
MseI TTAA 1 cut(s) 125
MspI CCGG 1 cut(s) 65
NdeII GATC 4 cut(s) 67, 137, 193, 216
NlaIII CATG 3 cut(s) 10, 46, 77
Psp124BI GAGCTC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 125
Sau3AI GATC 4 cut(s) 67, 137, 193, 216
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 25
SduI GDGCHC 1 cut(s) 51
SetI ASST 3 cut(s) 51, 225, 243
Sse9I AATT 1 cut(s) 83
SspMI CTAG 2 cut(s) 158, 265
SstI GAGCTC 1 cut(s) 51
TaaI ACNGT 2 cut(s) 106, 121
TasI AATT 1 cut(s) 83
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 183
XspI CTAG 2 cut(s) 158, 265
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.