RchiOBHm_Chr2g0171301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000689
Physical Location & Seq
Forward (+)
84970828 .. 84971623
796 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53872

Sequence Viewer

Length: 231 bp
ATGAGTTTGTATTTATGTGCCTTAATGAGTATTGGTTGTGTGATCAGAACAGATATTTTTGTCCTCATCCCTGTCCAGAGAGAATTTAGATTCATTCCACGTCAAAACATTTGGTTCCTCCAATTCGGAATTGAGGGAAACCTGGTAATCTCTTTCTTTATGCTTTTCTTTGGTAGAACTGTTCGAATGTATACATCTTTTGTGGAGTTCATAAATGGTATTAGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

9.02

Weight (kDa)

8.84

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 83
AjiI CACGTC 1 cut(s) 101
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
ApoI RAATTY 1 cut(s) 83
AsuII TTCGAA 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 184
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 184
Bsp143I GATC 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 184
BssMI GATC 1 cut(s) 42
BssNAI GTATAC 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 184
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstZ17I GTATAC 1 cut(s) 192
BtrI CACGTC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 66
CsiI ACCWGGT 1 cut(s) 141
CviJI RGCY 1 cut(s) 225
CviKI_1 RGCY 1 cut(s) 225
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 141
FaiI YATR 4 cut(s) 16, 161, 192, 212
FbaI TGATCA 1 cut(s) 42
FblI GTMKAC 1 cut(s) 191
FokI GGATG 1 cut(s) 53
HinfI GANTC 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 47, 128
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 4 cut(s) 84, 89, 128, 155
MabI ACCWGGT 1 cut(s) 141
MaeII ACGT 1 cut(s) 100
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MluCI AATT 3 cut(s) 83, 122, 129
MnlI CCTC 3 cut(s) 74, 127, 128
MseI TTAA 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
NdeII GATC 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 184
PfeI GAWTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 143
SetI ASST 3 cut(s) 103, 144, 227
SexAI ACCWGGT 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 184
SgeI CNNG 5 cut(s) 83, 88, 111, 154, 155
Sse9I AATT 3 cut(s) 83, 122, 129
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 83, 122, 129
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 82, 199
XapI RAATTY 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.