Rmu_sc0008411.1_g000007

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008411.1
Physical Location & Seq
Forward (+)
37217 .. 44364
7148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008411.1_g000007.1.cds

Sequence Viewer

Length: 1305 bp
atgtggaagcttaggtttggagacgaaggtgcaaataatgacccttacttgttcagcacaaacaacttccatgggaggcaaacatgggagttcgacccggctgccggcacacctgaagagcgagcagaggtggaagaacttctgggagagaaaaagttcaaacaaaagattccccaagtaaaggtggaggatggtgaggactgtacatatgaaaaggccaccgctgcatttagaagggcagctaccttctactctgccttacaatcacctcacggccattggcctgctgaaaatgctggtcccatgttttatattcctcccttggaggataactactatccccatggcaagtttcaatgtttgatgtgggattctctgaacatggtttatgagcctcttctttcttgctggcccttcaataagttgagagagaaggctcttcaagaaactattgaacacattcattatgaagatgaaaatagtcgatacataacaattggatgtggggaaaagccgttaatgatgcttgcgtgctggattgaagatccgaatggaaaaccctttaagaagcatcttgcaagagttatagattacatatgggttgcagaagatggaataactacgcagagttttggtagccaggcatgggatgctagtctttctgttcaagctttgcttgttggaaatcacactgatgaacttggatctgtacttcagaaagcacatgaattcctaaacaaatctcaggtctccatgcttaatgagtcctacaagcctcctcttcttattagggataatccttctggtgacttcttatctcggttccgtcacatttctaaaggtggttggactttctctgaccgagatcatggatggcaagtgtctgattgtactgcagagtgtttgaagtgttgcctattgctttcaatgatgccgaagcaaatcgtgggtgaaccagttgaatctaagcgcctgtatgatgctgtcaatgttatactttctctacaagtgaggactagtatctatacacctcttcaaggcgaccggtcgaatttggtgcagactgcaatgggactaatgggattaattcatgggggacaggccgagagagaccctactcccattcacagagctgcgaagcttttgattaattctcaattggaaaatggagattttccccaacaggaactgatgggggttttcaatgtcaatgccatgttacactatgcagcatacaggaatatcttcccgatttgggctctcggagaatattgttcccttccctccttctggatagatgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

434

Amino Acids

49.44

Weight (kDa)

5.42

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g08040
malus_domestica MD09G1245800.v1.1 MD11G1098500.v1.1 MD16G1237300.v1.1
pyrus_communis pycom03g07090 pycom03g07100 pycom09g08560 pycom13g20460 pycom16g19890
rosa_chinensis RchiOBHm_Chr2g0118961 RchiOBHm_Chr2g0148671 RchiOBHm_Chr2g0150531 RchiOBHm_Chr2g0171301 RchiOBHm_Chr3g0455021 RchiOBHm_Chr6g0249451
rosa_laevigata RLG00000001225 RLG00000001972 RLG00000008936 RLG00000009011 RLG00000009032 RLG00000015372 RLG00000019992 RLG00000020680 RLG00000026543
rosa_multiflora Rmu_co8272705.1_g000001 Rmu_co8286409.1_g000001 Rmu_sc0000048.1_g000034 Rmu_sc0000824.1_g000002 Rmu_sc0001839.1_g000023 Rmu_sc0002070.1_g000050 Rmu_sc0002349.1_g000005 Rmu_sc0002453.1_g000019 Rmu_sc0006431.1_g000026 Rmu_sc0006758.1_g000001 Rmu_sc0006758.1_g000013 Rmu_sc0006997.1_g000015 Rmu_sc0008411.1_g000007 Rmu_sc0008411.1_g000019 Rmu_sc0008411.1_g000028 Rmu_sc0008678.1_g000001
rosa_roxburghii Rroxscaffold_3G00225850 Rroxscaffold_3G00225860 Rroxscaffold_3G00233460 Rroxscaffold_3G00234260 Rroxscaffold_3G00236880 Rroxscaffold_3G00236890 Rroxscaffold_4G00294300 Rroxscaffold_4G00297380 Rroxscaffold_4G00324650 Rroxscaffold_5G00352840 Rroxscaffold_5G00354640 Rroxscaffold_5G00361500 Rroxscaffold_7G00156410 Rroxscaffold_7G00156420 Rroxscaffold_7G00198110 Rroxscaffold_7G00198120
rosa_samantha Rh1CG014400 Rh1DG009900 Rh2AG465900 Rh2BG342900 Rh2CG452400 Rh2DG488000 Rh3DG303300 Rh4AG118000 Rh4DG159500 Rh5AG246100 Rh6AG232100 Rh6BG178700 Rh6DG174100 Rh7BG231200 Rh7DG380300
rosa_wichuraiana Rw2G027640 Rw2G038070 Rw6G005920 Rw7G034430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 2 cut(s) 539, 712
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 2 cut(s) 728, 1051
AcuI CTGAAG 2 cut(s) 135, 698
AfaI GTAC 3 cut(s) 205, 711, 892
AfiI CCNNNNNNNGG 6 cut(s) 104, 181, 646, 1037, 1255, 1290
AgeI ACCGGT 1 cut(s) 1044
AhlI ACTAGT 1 cut(s) 1016
AjnI CCWGG 1 cut(s) 639
AluBI AGCT 5 cut(s) 10, 242, 671, 1133, 1141
AluI AGCT 5 cut(s) 10, 242, 671, 1133, 1141
Alw26I GTCTC 3 cut(s) 15, 754, 1104
AlwI GGATC 2 cut(s) 539, 712
AlwNI CAGNNNCTG 1 cut(s) 1189
AoxI GGCC 5 cut(s) 216, 274, 281, 410, 1101
ApeKI GCWGC 5 cut(s) 101, 224, 239, 1133, 1229
ApoI RAATTY 2 cut(s) 728, 1051
ArsI GACNNNNNNTTYG 2 cut(s) 732, 764
AseI ATTAAT 2 cut(s) 1085, 1149
AsiGI ACCGGT 1 cut(s) 1044
Asp700I GAANNNNTTC 4 cut(s) 138, 155, 459, 1244
AspLEI GCGC 1 cut(s) 972
AspS9I GGNCC 2 cut(s) 299, 411
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 4 cut(s) 206, 258, 818, 962
AvaII GGWCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 1261
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
BbvI GCAGC 5 cut(s) 88, 211, 251, 1120, 1241
BccI CCATC 4 cut(s) 185, 605, 867, 1186
BceAI ACGGC 2 cut(s) 289, 499
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 1039, 1073
BciT130I CCWGG 1 cut(s) 641
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 3 cut(s) 15, 754, 1104
BcuI ACTAGT 1 cut(s) 1016
BfaI CTAG 2 cut(s) 654, 1017
BfmI CTRYAG 1 cut(s) 894
BfoI RGCGCY 1 cut(s) 973
BisI GCNGC 5 cut(s) 102, 225, 240, 1134, 1230
BlsI GCNGC 5 cut(s) 103, 226, 241, 1135, 1231
Bme1390I CCNGG 2 cut(s) 98, 641
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 299, 411
BmiI GGNNCC 2 cut(s) 301, 824
BmrFI CCNGG 2 cut(s) 98, 641
BmsI GCATC 5 cut(s) 513, 580, 640, 921, 970
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 98
BsaI GGTCTC 2 cut(s) 754, 1104
BsaJI CCNNGG 3 cut(s) 70, 321, 343
BsaWI WCCGGW 1 cut(s) 1044
Bsc4I CCNNNNNNNGG 6 cut(s) 104, 181, 646, 1037, 1255, 1290
Bse118I RCCGGY 2 cut(s) 104, 1044
Bse1I ACTGG 1 cut(s) 956
Bse3DI GCAATG 1 cut(s) 1074
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 3 cut(s) 70, 321, 343
BseGI GGATG 4 cut(s) 196, 506, 655, 878
BseLI CCNNNNNNNGG 6 cut(s) 104, 181, 646, 1037, 1255, 1290
BseMI GCAATG 1 cut(s) 1074
BseMII CTCAG 1 cut(s) 758
BseNI ACTGG 1 cut(s) 956
BseRI GAGGAG 1 cut(s) 768
BseXI GCAGC 5 cut(s) 88, 211, 251, 1120, 1241
BsgI GTGCAG 1 cut(s) 1079
Bsh1285I CGRYCG 2 cut(s) 1045, 1049
BshFI GGCC 5 cut(s) 218, 276, 283, 412, 1103
BshTI ACCGGT 1 cut(s) 1044
BsiEI CGRYCG 2 cut(s) 1045, 1049
BsiSI CCGG 3 cut(s) 98, 105, 1045
BslFI GGGAC 3 cut(s) 285, 1086, 1110
BslI CCNNNNNNNGG 6 cut(s) 104, 181, 646, 1037, 1255, 1290
BsmAI GTCTC 3 cut(s) 15, 754, 1104
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 3 cut(s) 285, 1086, 1110
BsnI GGCC 5 cut(s) 218, 276, 283, 412, 1103
Bso31I GGTCTC 2 cut(s) 754, 1104
Bsp1286I GDGCHC 1 cut(s) 1261
Bsp1407I TGTACA 1 cut(s) 203
Bsp143I GATC 3 cut(s) 544, 704, 865
Bsp19I CCATGG 2 cut(s) 70, 343
BspACI CCGC 1 cut(s) 222
BspANI GGCC 5 cut(s) 218, 276, 283, 412, 1103
BspCNI CTCAG 1 cut(s) 757
BspLI GGNNCC 2 cut(s) 301, 824
BspMAI CTGCAG 1 cut(s) 898
BspPI GGATC 2 cut(s) 539, 712
BspQI GCTCTTC 2 cut(s) 111, 444
BspTNI GGTCTC 2 cut(s) 754, 1104
BsrDI GCAATG 1 cut(s) 1074
BsrFI RCCGGY 2 cut(s) 104, 1044
BsrGI TGTACA 1 cut(s) 203
BsrI ACTGG 1 cut(s) 956
BssAI RCCGGY 2 cut(s) 104, 1044
BssECI CCNNGG 3 cut(s) 70, 321, 343
BssMI GATC 3 cut(s) 544, 704, 865
BssT1I CCWWGG 3 cut(s) 70, 321, 343
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 5 cut(s) 111, 402, 444, 786, 1038
BstAPI GCANNNNNTGC 1 cut(s) 650
BstAUI TGTACA 1 cut(s) 203
BstC8I GCNNGC 6 cut(s) 106, 123, 285, 410, 528, 532
BstDEI CTNAG 3 cut(s) 11, 744, 966
BstDSI CCRYGG 2 cut(s) 70, 343
BstENI CCTNNNNNAGG 1 cut(s) 1035
BstF5I GGATG 4 cut(s) 196, 506, 655, 878
BstH2I RGCGCY 1 cut(s) 973
BstHHI GCGC 1 cut(s) 972
BstKTI GATC 3 cut(s) 547, 707, 868
BstMAI GTCTC 3 cut(s) 15, 754, 1104
BstMBI GATC 3 cut(s) 544, 704, 865
BstMCI CGRYCG 2 cut(s) 1045, 1049
BstMWI GCNNNNNNNGC 3 cut(s) 224, 293, 650
BstNI CCWGG 1 cut(s) 641
BstSCI CCNGG 2 cut(s) 96, 639
BstSFI CTRYAG 1 cut(s) 894
BstV1I GCAGC 5 cut(s) 88, 211, 251, 1120, 1241
BstX2I RGATCY 2 cut(s) 544, 704
BstYI RGATCY 2 cut(s) 544, 704
BsuRI GGCC 5 cut(s) 218, 276, 283, 412, 1103
BtgI CCRYGG 2 cut(s) 70, 343
BtsCI GGATG 4 cut(s) 196, 506, 655, 878
BtsIMutI CAGTG 1 cut(s) 690
Cac8I GCNNGC 6 cut(s) 106, 123, 285, 410, 528, 532
CaiI CAGNNNCTG 1 cut(s) 1189
CfoI GCGC 1 cut(s) 972
Cfr10I RCCGGY 2 cut(s) 104, 1044
Cfr13I GGNCC 2 cut(s) 299, 411
Csp6I GTAC 3 cut(s) 204, 710, 891
CspAI ACCGGT 1 cut(s) 1044
CviQI GTAC 3 cut(s) 204, 710, 891
DdeI CTNAG 3 cut(s) 11, 744, 966
DpnI GATC 3 cut(s) 546, 706, 867
DpnII GATC 3 cut(s) 544, 704, 865
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 5 cut(s) 111, 402, 444, 786, 1038
EarI CTCTTC 5 cut(s) 111, 402, 444, 786, 1038
Eco130I CCWWGG 3 cut(s) 70, 321, 343
Eco24I GRGCYC 1 cut(s) 1261
Eco31I GGTCTC 2 cut(s) 754, 1104
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 2 cut(s) 135, 698
EcoNI CCTNNNNNAGG 1 cut(s) 1035
EcoRI GAATTC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 3 cut(s) 70, 321, 343
EcoT38I GRGCYC 1 cut(s) 1261
ErhI CCWWGG 3 cut(s) 70, 321, 343
Esp3I CGTCTC 1 cut(s) 15
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 3 cut(s) 285, 1086, 1110
FauNDI CATATG 2 cut(s) 208, 596
Fnu4HI GCNGC 5 cut(s) 102, 225, 240, 1134, 1230
FokI GGATG 4 cut(s) 203, 513, 662, 885
FriOI GRGCYC 1 cut(s) 1261
Fsp4HI GCNGC 5 cut(s) 102, 225, 240, 1134, 1230
FspBI CTAG 2 cut(s) 654, 1017
GlaI GCGC 1 cut(s) 971
GluI GCNGC 5 cut(s) 102, 225, 240, 1134, 1230
HaeII RGCGCY 1 cut(s) 973
HaeIII GGCC 5 cut(s) 218, 276, 283, 412, 1103
HapII CCGG 3 cut(s) 98, 105, 1045
HhaI GCGC 1 cut(s) 972
Hin6I GCGC 1 cut(s) 970
HinP1I GCGC 1 cut(s) 970
HindIII AAGCTT 3 cut(s) 8, 669, 1139
HinfI GANTC 4 cut(s) 169, 371, 764, 962
HpaII CCGG 3 cut(s) 98, 105, 1045
HphI GGTGA 4 cut(s) 206, 258, 818, 962
Hpy166II GTNNAC 1 cut(s) 953
Hpy188I TCNGA 6 cut(s) 378, 549, 717, 859, 886, 1265
Hpy188III TCNNGA 3 cut(s) 443, 1249, 1291
Hpy8I GTNNAC 1 cut(s) 953
HpyAV CCTTC 8 cut(s) 20, 228, 256, 424, 427, 810, 1289, 1297
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 8 cut(s) 32, 227, 578, 605, 896, 1060, 1067, 1229
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 293, 650
HpyF3I CTNAG 3 cut(s) 11, 744, 966
HspAI GCGC 1 cut(s) 970
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 544, 704, 865
LguI GCTCTTC 2 cut(s) 111, 444
Lsp1109I GCAGC 5 cut(s) 88, 211, 251, 1120, 1241
LweI GCATC 5 cut(s) 513, 580, 640, 921, 970
MaeI CTAG 2 cut(s) 654, 1017
MaeIII GTNAC 3 cut(s) 806, 827, 1218
MalI GATC 3 cut(s) 546, 706, 867
MboI GATC 3 cut(s) 544, 704, 865
MfeI CAATTG 2 cut(s) 495, 1157
MflI RGATCY 2 cut(s) 544, 704
MhlI GDGCHC 1 cut(s) 1261
MluCI AATT 6 cut(s) 495, 728, 1051, 1086, 1150, 1157
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 2 cut(s) 661, 827
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 4 cut(s) 138, 155, 459, 1244
MseI TTAA 5 cut(s) 518, 564, 759, 1085, 1149
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 3 cut(s) 98, 105, 1045
MspR9I CCNGG 2 cut(s) 98, 641
MunI CAATTG 2 cut(s) 495, 1157
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 3 cut(s) 224, 293, 650
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 2 cut(s) 70, 343
NdeI CATATG 2 cut(s) 208, 596
NdeII GATC 3 cut(s) 544, 704, 865
NgoMIV GCCGGC 1 cut(s) 104
NlaIV GGNNCC 2 cut(s) 301, 824
NmeAIII GCCGAG 1 cut(s) 1129
NmuCI GTSAC 2 cut(s) 806, 827
PciSI GCTCTTC 2 cut(s) 111, 444
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 4 cut(s) 138, 155, 459, 1244
PfeI GAWTC 3 cut(s) 169, 371, 962
PinAI ACCGGT 1 cut(s) 1044
PkrI GCNGC 5 cut(s) 103, 226, 241, 1135, 1231
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
PshBI ATTAAT 2 cut(s) 1085, 1149
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 2 cut(s) 301, 824
PspPI GGNCC 2 cut(s) 299, 411
PstI CTGCAG 1 cut(s) 898
PstNI CAGNNNCTG 1 cut(s) 1189
PsuI RGATCY 2 cut(s) 544, 704
RsaI GTAC 3 cut(s) 205, 711, 892
RsaNI GTAC 3 cut(s) 204, 710, 891
RseI CAYNNNNRTG 1 cut(s) 693
SapI GCTCTTC 2 cut(s) 111, 444
SaqAI TTAA 5 cut(s) 518, 564, 759, 1085, 1149
SatI GCNGC 5 cut(s) 102, 225, 240, 1134, 1230
Sau3AI GATC 3 cut(s) 544, 704, 865
Sau96I GGNCC 2 cut(s) 299, 411
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 2 cut(s) 98, 641
SduI GDGCHC 1 cut(s) 1261
SfaNI GCATC 5 cut(s) 513, 580, 640, 921, 970
SfcI CTRYAG 1 cut(s) 894
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 693
SpeI ACTAGT 1 cut(s) 1016
Sse9I AATT 6 cut(s) 495, 728, 1051, 1086, 1150, 1157
SsiI CCGC 1 cut(s) 222
SspI AATATT 1 cut(s) 1271
SspMI CTAG 2 cut(s) 654, 1017
StyD4I CCNGG 2 cut(s) 96, 639
StyI CCWWGG 3 cut(s) 70, 321, 343
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 93, 484, 1049
TaqII GACCGA 1 cut(s) 876
TasI AATT 6 cut(s) 495, 728, 1051, 1086, 1150, 1157
TatI WGTACW 3 cut(s) 203, 709, 890
TfiI GAWTC 3 cut(s) 169, 371, 962
Tru1I TTAA 5 cut(s) 518, 564, 759, 1085, 1149
Tru9I TTAA 5 cut(s) 518, 564, 759, 1085, 1149
TscAI CASTG 1 cut(s) 697
TseFI GTSAC 2 cut(s) 806, 827
TseI GCWGC 5 cut(s) 101, 224, 239, 1133, 1229
Tsp45I GTSAC 2 cut(s) 806, 827
TspDTI ATGAA 7 cut(s) 225, 452, 483, 489, 711, 741, 1079
TspGWI ACGGA 1 cut(s) 815
TspRI CASTG 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 299
VspI ATTAAT 2 cut(s) 1085, 1149
XagI CCTNNNNNAGG 1 cut(s) 1035
XapI RAATTY 2 cut(s) 728, 1051
XmnI GAANNNNTTC 4 cut(s) 138, 155, 459, 1244
XspI CTAG 2 cut(s) 654, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.