FvH4_3g40701

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
34279470 .. 34281585
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40701.t2

Sequence Viewer

Length: 1557 bp
ATGAAGAGCTGCGAGCTTGAATCCCCTCACTGGCTGGAACAAGCAACCGAGGAAGTGAAGCAAGATTTGGAATCGCCGGAAACAAAACCTCTGATCTCGGCAATTATCTTTGTCCTTCCTTCTCCGATCTCACCATCGATGACTCATCGCCATCATCCAAAGAGCCATATTCAAGTTCAAATTCAAACGAAATGGAAAATGAGATTTACTTGGGACGATTTGAGGAGCATCTTCGTTGTCTTCAAGCGAGGCTCTGATCGAGAGAGATTAGTAGTCTCCGGCCGAAGCATCTTCGTCGTCGTCGCCACGCCTTACGTACAGAAGGAGAATATTAATTTGAAAACGATCGATATGCAGTCGATCTGGCGAATGGTTGATCGACTATGCTGCGGCCTAAGTATCAGCGACTTTTTTGCACCTGAACCTGATGCACCGAAGAAGGATTGGTTTTTGTACGTGATGACGGACCGTCAAATATCTCGTCTAAATATTGACGAATTTTGCAAAAGGGGGAAGAGTTTTGAGAAGTTTGAGTTGGAATTGTTGTATGATTACCACCATTGTGATCCTTCAATTAAACTTCCTCTCAACATGGAACATACAAGAGTGGGTTCTAAAGTGCAGATGCGGTACCACCGTGATGAAGAATCTGATGATTCTGACGAGGACGATGATGAAGTGGAGGATGAAGAAGAATTTGAGGATGGAGTGCATTATTGCTTTGATCCTACTGATCCAGACGGTCCGTCCATTCGCCAATGCGACAATTGTGATGATTTTGATTTACTTCACAAGGCCGGTTTCACCCTCGAAGACAAAGTTTATTCGTTTTATCCAAACTTTGAGGTTTTCGATCCTCTTCACCAACTCTGGAAACGACTGCTGCCTACTCCATCTGATCAGTTTCAGAAAATTTATGCCCTAGGCCACAAGCTCGTGTTTAAGAGTAGTCGACACAGCCAATCAGACGTGTTCGACCCTCGCGAACGAACATGGGAGAAATGGTCAAAGAGATCAAACCAAAAAACTGTAAAGTGCGTGGACGGTAAGTGCCTATTTTTTTATGGTGACATGATTGACATATGGAGTAGCAATGGGATGCAAGCTGGTGTAGAACATGAGGGATTTTTAATTGCTCAGCTTCGTGGTGGAGACGGACTTGCTGCTTTCCGGTGGGATTCAGTTGGAGTCCTAAAGCTGTATCGGGTGCTAGATGAGCTTGACCCCATATTTCGTACAAATGGTAAACTAATCATTAACAGTAAAAACTGGAGTAATGCAATGGGAAAATGTGATGGTGGCCGTATGTGGTTGGTGTATAATGGATACGACCCGATGCATTTTTGTCGTACGCGTATAGGAGTATTTCGAATTTCCGTCTCATACGACCTTCATGGCATTCCAGTTCTATCTGCCCAAGTTGAGGCTATAGAATCGTTTTCTGTCGGGGATTCGACAAGTATCAAAGCAGCTTTCGCCTTGTGCCATCAGCCGAACCAGAATGAGAAGAAAATCAGAGTCTTTCGTCATCCTTCCCAATGCACTGTTGCTTCGTGA

Protein Analysis

519

Amino Acids

60.13

Weight (kDa)

5.78

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 630
AccB1I GGYRCC 1 cut(s) 630
AccI GTMKAC 1 cut(s) 952
AccII CGCG 2 cut(s) 984, 1354
AciI CCGC 2 cut(s) 390, 628
AclWI GGATC 4 cut(s) 560, 719, 728, 848
AcoI YGGCCR 2 cut(s) 280, 1300
AcsI RAATTY 5 cut(s) 180, 497, 695, 912, 1371
AfaI GTAC 5 cut(s) 318, 455, 632, 1237, 1351
AfiI CCNNNNNNNGG 2 cut(s) 30, 1423
AflIII ACRYGT 2 cut(s) 969, 1352
AgsI TTSAA 7 cut(s) 20, 173, 179, 185, 244, 340, 573
AhdI GACNNNNNGTC 2 cut(s) 468, 745
AjiI CACGTC 1 cut(s) 970
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 518, 550
AleI CACNNNNGTG 1 cut(s) 561
AluBI AGCT 8 cut(s) 9, 16, 934, 1106, 1141, 1198, 1219, 1472
AluI AGCT 8 cut(s) 9, 16, 934, 1106, 1141, 1198, 1219, 1472
Alw26I GTCTC 3 cut(s) 280, 1146, 1384
AlwI GGATC 4 cut(s) 560, 719, 728, 848
AoxI GGCC 5 cut(s) 280, 391, 795, 925, 1300
ApeKI GCWGC 5 cut(s) 9, 387, 883, 1163, 1469
ApoI RAATTY 5 cut(s) 180, 497, 695, 912, 1371
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
AseI ATTAAT 1 cut(s) 333
Asp718I GGTACC 1 cut(s) 630
AspA2I CCTAGG 1 cut(s) 922
AspS9I GGNCC 2 cut(s) 466, 743
AsuHPI GGTGA 4 cut(s) 123, 796, 854, 1079
AsuII TTCGAA 1 cut(s) 1369
AvaII GGWCC 2 cut(s) 466, 743
AvrII CCTAGG 1 cut(s) 922
BaeI ACNNNNGTAYC 2 cut(s) 622, 655
BanI GGYRCC 1 cut(s) 630
BauI CACGAG 1 cut(s) 935
BbsI GAAGAC 2 cut(s) 232, 819
BbvI GCAGC 4 cut(s) 374, 870, 1150, 1481
BccI CCATC 6 cut(s) 142, 159, 698, 901, 1289, 1494
BceAI ACGGC 1 cut(s) 1287
BciVI GTATCC 1 cut(s) 1319
BclI TGATCA 1 cut(s) 898
BcoDI GTCTC 3 cut(s) 280, 1146, 1384
BfaI CTAG 2 cut(s) 923, 1211
BfmI CTRYAG 1 cut(s) 1428
BfuI GTATCC 1 cut(s) 1319
BisI GCNGC 6 cut(s) 10, 388, 391, 884, 1164, 1470
BlnI CCTAGG 1 cut(s) 922
BlpI GCTNAGC 1 cut(s) 1137
BlsI GCNGC 6 cut(s) 11, 389, 392, 885, 1165, 1471
Bme18I GGWCC 2 cut(s) 466, 743
BmeRI GACNNNNNGTC 2 cut(s) 468, 745
BmgBI CACGTC 1 cut(s) 970
BmgT120I GGNCC 2 cut(s) 466, 743
BmiI GGNNCC 1 cut(s) 632
BmsI GCATC 6 cut(s) 237, 297, 418, 615, 1089, 1326
BpiI GAAGAC 2 cut(s) 232, 819
BpmI CTGGAG 1 cut(s) 1291
Bpu1102I GCTNAGC 1 cut(s) 1137
Bpu14I TTCGAA 1 cut(s) 1369
Bsa29I ATCGAT 2 cut(s) 137, 348
BsaAI YACGTR 2 cut(s) 316, 457
BsaJI CCNNGG 2 cut(s) 48, 922
BsaWI WCCGGW 1 cut(s) 1170
BsaXI ACNNNNNCTCC 2 cut(s) 989, 1019
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 1423
Bse118I RCCGGY 1 cut(s) 797
Bse1I ACTGG 3 cut(s) 35, 1274, 1403
Bse3DI GCAATG 2 cut(s) 1099, 1287
BseCI ATCGAT 2 cut(s) 137, 348
BseDI CCNNGG 2 cut(s) 48, 922
BseGI GGATG 5 cut(s) 154, 691, 709, 1104, 1528
BseLI CCNNNNNNNGG 2 cut(s) 30, 1423
BseMI GCAATG 2 cut(s) 1099, 1287
BseMII CTCAG 1 cut(s) 1151
BseNI ACTGG 3 cut(s) 35, 1274, 1403
BseRI GAGGAG 1 cut(s) 238
BseX3I CGGCCG 1 cut(s) 280
BseXI GCAGC 4 cut(s) 374, 870, 1150, 1481
BsgI GTGCAG 1 cut(s) 641
Bsh1236I CGCG 2 cut(s) 984, 1354
Bsh1285I CGRYCG 2 cut(s) 283, 348
BshFI GGCC 5 cut(s) 282, 393, 797, 927, 1302
BshNI GGYRCC 1 cut(s) 630
BshVI ATCGAT 2 cut(s) 137, 348
BsiEI CGRYCG 2 cut(s) 283, 348
BsiSI CCGG 4 cut(s) 77, 279, 798, 1171
BsiWI CGTACG 1 cut(s) 1349
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 30, 1423
BsmAI GTCTC 3 cut(s) 280, 1146, 1384
BsmBI CGTCTC 2 cut(s) 1146, 1384
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 1398
BsnI GGCC 5 cut(s) 282, 393, 797, 927, 1302
Bsp119I TTCGAA 1 cut(s) 1369
Bsp1720I GCTNAGC 1 cut(s) 1137
Bsp68I TCGCGA 1 cut(s) 984
BspACI CCGC 2 cut(s) 390, 628
BspANI GGCC 5 cut(s) 282, 393, 797, 927, 1302
BspCNI CTCAG 1 cut(s) 1150
BspDI ATCGAT 2 cut(s) 137, 348
BspFNI CGCG 2 cut(s) 984, 1354
BspLI GGNNCC 1 cut(s) 632
BspPI GGATC 4 cut(s) 560, 719, 728, 848
BspT104I TTCGAA 1 cut(s) 1369
BspT107I GGYRCC 1 cut(s) 630
BsrDI GCAATG 2 cut(s) 1099, 1287
BsrFI RCCGGY 1 cut(s) 797
BsrI ACTGG 3 cut(s) 35, 1274, 1403
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 2 cut(s) 48, 922
BssSI CACGAG 1 cut(s) 935
BssT1I CCWWGG 1 cut(s) 922
Bst2BI CACGAG 1 cut(s) 935
Bst4CI ACNGT 7 cut(s) 470, 638, 743, 1030, 1046, 1262, 1546
Bst6I CTCTTC 2 cut(s) 509, 864
BstBAI YACGTR 2 cut(s) 316, 457
BstBI TTCGAA 1 cut(s) 1369
BstC8I GCNNGC 2 cut(s) 14, 1104
BstDEI CTNAG 2 cut(s) 395, 1137
BstF5I GGATG 5 cut(s) 154, 691, 709, 1104, 1528
BstFNI CGCG 2 cut(s) 984, 1354
BstMAI GTCTC 3 cut(s) 280, 1146, 1384
BstMCI CGRYCG 2 cut(s) 283, 348
BstMWI GCNNNNNNNGC 2 cut(s) 1216, 1475
BstSFI CTRYAG 1 cut(s) 1428
BstSNI TACGTA 1 cut(s) 316
BstUI CGCG 2 cut(s) 984, 1354
BstV1I GCAGC 4 cut(s) 374, 870, 1150, 1481
BstV2I GAAGAC 2 cut(s) 232, 819
BstZI CGGCCG 1 cut(s) 280
Bsu15I ATCGAT 2 cut(s) 137, 348
BsuI GTATCC 1 cut(s) 1319
BsuRI GGCC 5 cut(s) 282, 393, 797, 927, 1302
BsuTUI ATCGAT 2 cut(s) 137, 348
BtgZI GCGATG 1 cut(s) 131
BtrI CACGTC 1 cut(s) 970
BtsCI GGATG 5 cut(s) 154, 691, 709, 1104, 1528
BtsIMutI CAGTG 2 cut(s) 28, 1542
BtuMI TCGCGA 1 cut(s) 984
Cac8I GCNNGC 2 cut(s) 14, 1104
Cfr10I RCCGGY 1 cut(s) 797
Cfr13I GGNCC 2 cut(s) 466, 743
ClaI ATCGAT 2 cut(s) 137, 348
CpoI CGGWCCG 2 cut(s) 466, 743
Csp6I GTAC 5 cut(s) 317, 454, 631, 1236, 1350
CspI CGGWCCG 2 cut(s) 466, 743
CviAII CATG 5 cut(s) 592, 993, 1072, 1118, 1394
CviQI GTAC 5 cut(s) 317, 454, 631, 1236, 1350
DdeI CTNAG 2 cut(s) 395, 1137
DriI GACNNNNNGTC 2 cut(s) 468, 745
EaeI YGGCCR 2 cut(s) 280, 1300
EagI CGGCCG 1 cut(s) 280
Eam1104I CTCTTC 2 cut(s) 509, 864
Eam1105I GACNNNNNGTC 2 cut(s) 468, 745
EarI CTCTTC 2 cut(s) 509, 864
EclXI CGGCCG 1 cut(s) 280
Eco105I TACGTA 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 922
Eco47I GGWCC 2 cut(s) 466, 743
Eco52I CGGCCG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 922
EcoT22I ATGCAT 1 cut(s) 1341
ErhI CCWWGG 1 cut(s) 922
Esp3I CGTCTC 2 cut(s) 1146, 1384
FaeI CATG 5 cut(s) 595, 996, 1075, 1121, 1397
FaqI GGGAC 1 cut(s) 227
FatI CATG 5 cut(s) 591, 992, 1071, 1117, 1393
FauNDI CATATG 1 cut(s) 1082
FbaI TGATCA 1 cut(s) 898
FblI GTMKAC 1 cut(s) 952
Fnu4HI GCNGC 6 cut(s) 10, 388, 391, 884, 1164, 1470
FokI GGATG 5 cut(s) 141, 698, 716, 1111, 1515
Fsp4HI GCNGC 6 cut(s) 10, 388, 391, 884, 1164, 1470
FspBI CTAG 2 cut(s) 923, 1211
GluI GCNGC 6 cut(s) 10, 388, 391, 884, 1164, 1470
GsuI CTGGAG 1 cut(s) 1291
HaeIII GGCC 5 cut(s) 282, 393, 797, 927, 1302
HapII CCGG 4 cut(s) 77, 279, 798, 1171
Hin1II CATG 5 cut(s) 595, 996, 1075, 1121, 1397
HincII GTYRAC 1 cut(s) 953
HindII GTYRAC 1 cut(s) 953
HpaII CCGG 4 cut(s) 77, 279, 798, 1171
HphI GGTGA 4 cut(s) 123, 796, 854, 1079
Hpy166II GTNNAC 3 cut(s) 953, 1042, 1247
Hpy188I TCNGA 9 cut(s) 93, 126, 256, 652, 661, 898, 909, 967, 1517
Hpy188III TCNNGA 5 cut(s) 260, 737, 871, 983, 1554
Hpy8I GTNNAC 3 cut(s) 953, 1042, 1247
Hpy99I CGWCG 3 cut(s) 299, 302, 305
HpyAV CCTTC 7 cut(s) 125, 129, 316, 433, 579, 1400, 1542
HpyCH4III ACNGT 7 cut(s) 470, 638, 743, 1030, 1046, 1262, 1546
HpyCH4IV ACGT 3 cut(s) 315, 456, 969
HpyF10VI GCNNNNNNNGC 2 cut(s) 1216, 1475
HpyF3I CTNAG 2 cut(s) 395, 1137
HpySE526I ACGT 3 cut(s) 315, 456, 969
Hsp92II CATG 5 cut(s) 595, 996, 1075, 1121, 1397
KpnI GGTACC 1 cut(s) 634
Ksp22I TGATCA 1 cut(s) 898
LmnI GCTCC 1 cut(s) 225
Lsp1109I GCAGC 4 cut(s) 374, 870, 1150, 1481
LweI GCATC 6 cut(s) 237, 297, 418, 615, 1089, 1326
MaeI CTAG 2 cut(s) 923, 1211
MaeII ACGT 3 cut(s) 315, 456, 969
MaeIII GTNAC 1 cut(s) 1067
MfeI CAATTG 1 cut(s) 766
MluI ACGCGT 1 cut(s) 1352
MlyI GAGTC 3 cut(s) 136, 1197, 1527
MmeI TCCRAC 2 cut(s) 516, 1165
Mph1103I ATGCAT 1 cut(s) 1341
MseI TTAA 5 cut(s) 333, 576, 942, 1130, 1257
MslI CAYNNNNRTG 2 cut(s) 561, 639
MspI CCGG 4 cut(s) 77, 279, 798, 1171
MunI CAATTG 1 cut(s) 766
Mva1269I GAATGC 1 cut(s) 1398
MvnI CGCG 2 cut(s) 984, 1354
MwoI GCNNNNNNNGC 2 cut(s) 1216, 1475
NdeI CATATG 1 cut(s) 1082
NlaIII CATG 5 cut(s) 595, 996, 1075, 1121, 1397
NlaIV GGNNCC 1 cut(s) 632
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 1067
NruI TCGCGA 1 cut(s) 984
NsiI ATGCAT 1 cut(s) 1341
NspV TTCGAA 1 cut(s) 1369
OliI CACNNNNGTG 1 cut(s) 561
PcsI WCGNNNNNNNCGW 1 cut(s) 981
PctI GAATGC 1 cut(s) 1398
PfeI GAWTC 7 cut(s) 20, 71, 647, 656, 1178, 1433, 1451
Pfl23II CGTACG 1 cut(s) 1349
PkrI GCNGC 6 cut(s) 11, 389, 392, 885, 1165, 1471
Ple19I CGATCG 1 cut(s) 348
PleI GAGTC 3 cut(s) 136, 1196, 1526
PpsI GAGTC 3 cut(s) 136, 1196, 1526
Ppu21I YACGTR 2 cut(s) 316, 457
PshBI ATTAAT 1 cut(s) 333
PspLI CGTACG 1 cut(s) 1349
PspN4I GGNNCC 1 cut(s) 632
PspPI GGNCC 2 cut(s) 466, 743
PvuI CGATCG 1 cut(s) 348
RruI TCGCGA 1 cut(s) 984
RsaI GTAC 5 cut(s) 318, 455, 632, 1237, 1351
RsaNI GTAC 5 cut(s) 317, 454, 631, 1236, 1350
RseI CAYNNNNRTG 2 cut(s) 561, 639
Rsr2I CGGWCCG 2 cut(s) 466, 743
RsrII CGGWCCG 2 cut(s) 466, 743
SalI GTCGAC 1 cut(s) 951
SaqAI TTAA 5 cut(s) 333, 576, 942, 1130, 1257
SatI GCNGC 6 cut(s) 10, 388, 391, 884, 1164, 1470
Sau96I GGNCC 2 cut(s) 466, 743
SchI GAGTC 3 cut(s) 136, 1197, 1527
SfaNI GCATC 6 cut(s) 237, 297, 418, 615, 1089, 1326
SfcI CTRYAG 1 cut(s) 1428
SfuI TTCGAA 1 cut(s) 1369
SinI GGWCC 2 cut(s) 466, 743
SmiMI CAYNNNNRTG 2 cut(s) 561, 639
SnaBI TACGTA 1 cut(s) 316
SsiI CCGC 2 cut(s) 390, 628
SspI AATATT 2 cut(s) 331, 490
SspMI CTAG 2 cut(s) 923, 1211
StyI CCWWGG 1 cut(s) 922
TaaI ACNGT 7 cut(s) 470, 638, 743, 1030, 1046, 1262, 1546
TaiI ACGT 3 cut(s) 318, 459, 972
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 7 cut(s) 20, 71, 647, 656, 1178, 1433, 1451
Tru1I TTAA 5 cut(s) 333, 576, 942, 1130, 1257
Tru9I TTAA 5 cut(s) 333, 576, 942, 1130, 1257
TscAI CASTG 2 cut(s) 35, 1549
TseFI GTSAC 1 cut(s) 1067
TseI GCWGC 5 cut(s) 9, 387, 883, 1163, 1469
Tsp45I GTSAC 1 cut(s) 1067
TspDTI ATGAA 5 cut(s) 17, 657, 690, 702, 1382
TspGWI ACGGA 4 cut(s) 479, 735, 1170, 1366
TspRI CASTG 2 cut(s) 35, 1549
VpaK11BI GGWCC 2 cut(s) 466, 743
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 5 cut(s) 180, 497, 695, 912, 1371
XmaJI CCTAGG 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 952
XspI CTAG 2 cut(s) 923, 1211
Zsp2I ATGCAT 1 cut(s) 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.