Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

80637896 .. 80638597

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG575800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTGAACAAGGAGTGCTTTTCAAACGTGAAGAAGACATGGGATCGACTATGCCGTCTTAATATTAGCAAGCAAATGTGTACCTCCGTCTCCTCAAAACAGCCCAACAACAAAGAGTGGTTTTTGTACTTGAATATGCGCAATCGAGTATGCCGTCTAAACATTAGGGAATTCTGCAAAAGGAGGCCAAAGTGTGAACTTGTGCATGATTATTATCCAGGCTGGCCTCGTAGGACAGTTCCCACCTTGATGAAACCAGTAGTTGTTGGTTCCAAAGTTTATATGTGGGGTGGTATATCGAACCCCAATGTATATTCATCGAACCCCAATGTATATTCCTTTGATCCAGCTACGAGTCCACCCTTCCGTCTCTGCGAGGGTCTGATTTCTAGATTGGTTCCACCCAAGATTTATTTCCCTTACATTATAGTGTTCAGCCTTGAGGAGATAATCTATGTACTTGAAGAAGATCTATCCCATTTTAGGGTTTTTGATACGGTTCACCAATCCTGGAAAGACCTTCCTCACCCCCCTCACTTGCCTAATACTGATCCCCGAGTGTCTGACTACTGCGTTTGCAGCCACATACTCTATATCAGTACCGGACCAGACAATTCATTAATTTTTGCACTCTTGAAGAGAAATGGGAGGATGCCAAGACAATCCATAATGGTGTTACAGAGAAATTCTTGGCTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

233

Amino Acids

27.36

Weight (kDa)

9.45

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	140
AclWI	GGATC	3 cut(s)	51, 338, 545
AcsI	RAATTY	2 cut(s)	170, 685
AfaI	GTAC	4 cut(s)	82, 128, 459, 601
AfiI	CCNNNNNNNGG	2 cut(s)	483, 484
AgsI	TTSAA	4 cut(s)	24, 133, 464, 637
AjnI	CCWGG	2 cut(s)	217, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	94, 374
AlwI	GGATC	3 cut(s)	51, 338, 545
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	2 cut(s)	185, 224
ApeKI	GCWGC	1 cut(s)	579
ApoI	RAATTY	2 cut(s)	170, 685
AseI	ATTAAT	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	605
AsuHPI	GGTGA	2 cut(s)	494, 518
AvaI	CYCGRG	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	591
BceAI	ACGGC	2 cut(s)	39, 138
BciT130I	CCWGG	2 cut(s)	219, 511
BcoDI	GTCTC	2 cut(s)	94, 374
BfaI	CTAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	2 cut(s)	219, 511
Bme18I	GGWCC	1 cut(s)	605
BmeT110I	CYCGRG	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	2 cut(s)	271, 399
BmrFI	CCNGG	2 cut(s)	219, 511
BmsI	GCATC	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	2 cut(s)	483, 484
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	219, 511
BseGI	GGATG	1 cut(s)	657
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	483, 484
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	82, 458
BseXI	GCAGC	1 cut(s)	591
BshFI	GGCC	2 cut(s)	187, 226
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	603
BslI	CCNNNNNNNGG	2 cut(s)	483, 484
BsmAI	GTCTC	2 cut(s)	94, 374
BsmBI	CGTCTC	2 cut(s)	94, 374
BsnI	GGCC	2 cut(s)	187, 226
BsoBI	CYCGRG	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	43, 343, 469, 550
BspANI	GGCC	2 cut(s)	187, 226
BspLI	GGNNCC	2 cut(s)	271, 399
BspPI	GGATC	3 cut(s)	51, 338, 545
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	4 cut(s)	43, 343, 469, 550
Bst2UI	CCWGG	2 cut(s)	219, 511
Bst4CI	ACNGT	2 cut(s)	238, 499
Bst6I	CTCTTC	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	71, 224
BstF5I	GGATG	1 cut(s)	657
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	4 cut(s)	46, 346, 472, 553
BstMAI	GTCTC	2 cut(s)	94, 374
BstMBI	GATC	4 cut(s)	43, 343, 469, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstNI	CCWGG	2 cut(s)	219, 511
BstSCI	CCNGG	2 cut(s)	217, 509
BstV1I	GCAGC	1 cut(s)	591
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	187, 226
BtsCI	GGATG	1 cut(s)	657
Cac8I	GCNNGC	2 cut(s)	71, 224
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	605
Csp6I	GTAC	4 cut(s)	81, 127, 458, 600
CviAII	CATG	2 cut(s)	39, 206
CviJI	RGCY	8 cut(s)	103, 187, 222, 226, 350, 438, 582, 694
CviKI_1	RGCY	8 cut(s)	103, 187, 222, 226, 350, 438, 582, 694
CviQI	GTAC	4 cut(s)	81, 127, 458, 600
DpnI	GATC	4 cut(s)	45, 345, 471, 552
DpnII	GATC	4 cut(s)	43, 343, 469, 550
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	555
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	217, 509
Esp3I	CGTCTC	2 cut(s)	94, 374
FaeI	CATG	2 cut(s)	42, 209
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	2 cut(s)	38, 205
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	1 cut(s)	664
Fsp4HI	GCNGC	1 cut(s)	580
FspBI	CTAG	1 cut(s)	390
FspI	TGCGCA	1 cut(s)	140
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	580
HaeIII	GGCC	2 cut(s)	187, 226
HapII	CCGG	1 cut(s)	603
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	42, 209
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	2 cut(s)	494, 518
Hpy166II	GTNNAC	4 cut(s)	81, 197, 359, 502
Hpy188I	TCNGA	2 cut(s)	384, 565
Hpy188III	TCNNGA	2 cut(s)	390, 634
Hpy8I	GTNNAC	4 cut(s)	81, 197, 359, 502
HpyAV	CCTTC	2 cut(s)	373, 530
HpyCH4III	ACNGT	2 cut(s)	238, 499
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	177, 205, 579, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	42, 209
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	43, 343, 469, 550
LpnPI	CCDG	9 cut(s)	204, 208, 231, 270, 360, 496, 523, 616, 621
Lsp1109I	GCAGC	1 cut(s)	591
LweI	GCATC	1 cut(s)	642
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	675
MalI	GATC	4 cut(s)	45, 345, 471, 552
MboI	GATC	4 cut(s)	43, 343, 469, 550
MboII	GAAGA	5 cut(s)	43, 46, 476, 479, 649
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	4 cut(s)	170, 613, 621, 685
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	9 cut(s)	94, 103, 177, 237, 370, 436, 534, 543, 642
MseI	TTAA	2 cut(s)	60, 620
MslI	CAYNNNNRTG	3 cut(s)	248, 428, 671
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	2 cut(s)	219, 511
MvaI	CCWGG	2 cut(s)	219, 511
MwoI	GCNNNNNNNGC	1 cut(s)	579
NdeII	GATC	4 cut(s)	43, 343, 469, 550
NlaIII	CATG	2 cut(s)	42, 209
NlaIV	GGNNCC	2 cut(s)	271, 399
NsbI	TGCGCA	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	2 cut(s)	52, 151
PfoI	TCCNGGA	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	581
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PshBI	ATTAAT	1 cut(s)	620
Psp6I	CCWGG	2 cut(s)	217, 509
PspGI	CCWGG	2 cut(s)	217, 509
PspN4I	GGNNCC	2 cut(s)	271, 399
PspPI	GGNCC	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	4 cut(s)	82, 128, 459, 601
RsaNI	GTAC	4 cut(s)	81, 127, 458, 600
RseI	CAYNNNNRTG	3 cut(s)	248, 428, 671
SaqAI	TTAA	2 cut(s)	60, 620
SatI	GCNGC	1 cut(s)	580
Sau3AI	GATC	4 cut(s)	43, 343, 469, 550
Sau96I	GGNCC	1 cut(s)	605
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	219, 511
SetI	ASST	5 cut(s)	30, 86, 248, 352, 522
SfaNI	GCATC	1 cut(s)	642
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	3 cut(s)	248, 428, 671
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	4 cut(s)	170, 613, 621, 685
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	2 cut(s)	217, 509
TaaI	ACNGT	2 cut(s)	238, 499
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	46, 145, 299, 320
TasI	AATT	4 cut(s)	170, 613, 621, 685
TatI	WGTACW	2 cut(s)	126, 457
Tru1I	TTAA	2 cut(s)	60, 620
Tru9I	TTAA	2 cut(s)	60, 620
TseI	GCWGC	1 cut(s)	579
TspDTI	ATGAA	4 cut(s)	266, 306, 606, 687
TspGWI	ACGGA	2 cut(s)	76, 356
VpaK11BI	GGWCC	1 cut(s)	605
VspI	ATTAAT	1 cut(s)	620
XapI	RAATTY	2 cut(s)	170, 685
XbaI	TCTAGA	1 cut(s)	389
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.