RLG00000008240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000563
Physical Location & Seq
Reverse (-)
27616178 .. 27617167
990 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008240

Sequence Viewer

Length: 990 bp
ATGTCTAAGTTCGGAGTTGTACATGATTTCTATCCAGAAGGTCGTCCTAGTACAATTCCCAGCAGAATAAAACATATAACTGTGGGATCAAAAGTATATCTGGTTGGCGGTCAAAGACTCGATCGAAGAATCCATAGTGATGCACATGGGAGATGTTTTGCAATGCCCAACTTAGATATTTATGCATTTAATCACAATTATGAAACAGAAGAGGGTCCTTCTATCACCCTCTGCCAATGTGAAGGTTCCATTCCCAGGTTGATTGATCCACGGACCAAAACCATTCCTATCACGATTGCTCTTGAGGATAAGATCTATGTTCTGGCAAAAAGACCATACTTGGGGGACGCAGAAGAACTTAATGATGATGATCGGCCACCACTTTTTAAGGTTTTTGATCCCCTCAAACAATCCTGGAAACACCTCCCTCATCCCCCCTGCTATAATATATCATCACGTGACACCGAGCCTTATGTGTGTAACTACTTCTCTTGGGGCCACAAGCTCATAATTCGAACCAAGGGAAAGAACAAAAAGAAGAACCCCGGCACGTACATTTTTGACACTCACCAAGAGAAATGGGAGGATGCCAAGAATATCAGTGCAATCCTTGATGAGGGTTTTAGGGTTGTGGCAGAATTCCAGGGATTTTTAATTGGCATGCCTTATAAGCGCCAAGAACTTGTTGCTTACCATTTGGATTCGAATGGGATTCCCAAACTCTGGAAGGTGCTACACGAGCTGCAAGAGATATTTAGCTCTTGTTTACTTGTCTCCGACTGTTTTCTTGGTAAATATGATGGTGACCGTATGTGGCTGGTGTATTCTGCGCAGGATAGTATGCAATTTTGGCATGCGCGTGTAGCGGTGTTTCGTGTTTTCATCTCTAATGACTATGATGGAAATCAAGTCCTCTGTGCAGATCTTGAGGCTGCACAATTTTTTCAGTTTGATAGATTTATTAGCTTGGCTTTCACTTATGCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

38.03

Weight (kDa)

6.63

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 59 - 290 4.2e-08 FKB95, Kelch-repeats domain
DUF1668 PF07893 83 - 198 8.5e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
Acc16I TGCGCA 1 cut(s) 831
AccB7I CCANNNNNTGG 1 cut(s) 723
AccII CGCG 1 cut(s) 859
AciI CCGC 2 cut(s) 108, 866
AclWI GGATC 3 cut(s) 94, 260, 392
AcoI YGGCCR 1 cut(s) 374
AcsI RAATTY 1 cut(s) 638
AcvI CACGTG 1 cut(s) 458
AfaI GTAC 3 cut(s) 21, 52, 554
AfiI CCNNNNNNNGG 4 cut(s) 255, 341, 616, 723
AjnI CCWGG 3 cut(s) 254, 413, 642
AluBI AGCT 4 cut(s) 505, 742, 759, 966
AluI AGCT 4 cut(s) 505, 742, 759, 966
Alw26I GTCTC 1 cut(s) 778
AlwI GGATC 3 cut(s) 94, 260, 392
AoxI GGCC 2 cut(s) 374, 496
ApeKI GCWGC 2 cut(s) 742, 932
ApoI RAATTY 1 cut(s) 638
AspLEI GCGC 3 cut(s) 675, 832, 859
AspS9I GGNCC 3 cut(s) 215, 273, 496
AsuC2I CCSGG 1 cut(s) 546
AsuHPI GGTGA 3 cut(s) 217, 560, 815
AsuII TTCGAA 2 cut(s) 514, 704
AvaII GGWCC 2 cut(s) 215, 273
BauI CACGAG 1 cut(s) 737
BbrPI CACGTG 1 cut(s) 458
BbvI GCAGC 2 cut(s) 729, 919
BccI CCATC 2 cut(s) 794, 893
BciT130I CCWGG 3 cut(s) 256, 415, 644
BcnI CCSGG 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 778
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 676
BglII AGATCT 2 cut(s) 312, 922
BisI GCNGC 2 cut(s) 743, 933
BlsI GCNGC 2 cut(s) 744, 934
Bme1390I CCNGG 4 cut(s) 256, 415, 546, 644
Bme18I GGWCC 2 cut(s) 215, 273
BmgT120I GGNCC 3 cut(s) 215, 273, 496
BmiI GGNNCC 3 cut(s) 216, 247, 497
BmrFI CCNGG 4 cut(s) 256, 415, 546, 644
BmsI GCATC 2 cut(s) 130, 577
Bpu14I TTCGAA 2 cut(s) 514, 704
BpuEI CTTGAG 2 cut(s) 323, 947
BpuMI CCSGG 1 cut(s) 546
BsaAI YACGTR 2 cut(s) 458, 552
BsaBI GATNNNNATC 3 cut(s) 30, 369, 903
BsaJI CCNNGG 5 cut(s) 254, 269, 519, 544, 643
Bsc4I CCNNNNNNNGG 4 cut(s) 255, 341, 616, 723
Bse3DI GCAATG 1 cut(s) 168
Bse8I GATNNNNATC 3 cut(s) 30, 369, 903
BseBI CCWGG 3 cut(s) 256, 415, 644
BseDI CCNNGG 5 cut(s) 254, 269, 519, 544, 643
BseGI GGATG 2 cut(s) 430, 592
BseJI GATNNNNATC 3 cut(s) 30, 369, 903
BseLI CCNNNNNNNGG 4 cut(s) 255, 341, 616, 723
BseMI GCAATG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 729, 919
BseYI CCCAGC 1 cut(s) 59
BsgI GTGCAG 2 cut(s) 918, 939
Bsh1236I CGCG 1 cut(s) 859
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 2 cut(s) 376, 498
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 546
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 4 cut(s) 255, 341, 616, 723
BsmAI GTCTC 1 cut(s) 778
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 2 cut(s) 376, 498
Bsp119I TTCGAA 2 cut(s) 514, 704
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 7 cut(s) 86, 121, 265, 312, 370, 397, 922
BspACI CCGC 2 cut(s) 108, 866
BspANI GGCC 2 cut(s) 376, 498
BspFNI CGCG 1 cut(s) 859
BspLI GGNNCC 3 cut(s) 216, 247, 497
BspPI GGATC 3 cut(s) 94, 260, 392
BspT104I TTCGAA 2 cut(s) 514, 704
BsrDI GCAATG 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 19
BssECI CCNNGG 5 cut(s) 254, 269, 519, 544, 643
BssMI GATC 7 cut(s) 86, 121, 265, 312, 370, 397, 922
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 1 cut(s) 519
Bst2BI CACGAG 1 cut(s) 737
Bst2UI CCWGG 3 cut(s) 256, 415, 644
Bst4CI ACNGT 3 cut(s) 82, 782, 809
Bst6I CTCTTC 1 cut(s) 204
BstAUI TGTACA 1 cut(s) 19
BstBAI YACGTR 2 cut(s) 458, 552
BstBI TTCGAA 2 cut(s) 514, 704
BstC8I GCNNGC 2 cut(s) 662, 855
BstDEI CTNAG 2 cut(s) 6, 172
BstDSI CCRYGG 1 cut(s) 269
BstEII GGTNACC 1 cut(s) 803
BstENI CCTNNNNNAGG 1 cut(s) 614
BstF5I GGATG 2 cut(s) 430, 592
BstFNI CGCG 1 cut(s) 859
BstH2I RGCGCY 1 cut(s) 676
BstHHI GCGC 3 cut(s) 675, 832, 859
BstKTI GATC 7 cut(s) 89, 124, 268, 315, 373, 400, 925
BstMAI GTCTC 1 cut(s) 778
BstMBI GATC 7 cut(s) 86, 121, 265, 312, 370, 397, 922
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 670, 739, 850, 863
BstNI CCWGG 3 cut(s) 256, 415, 644
BstNSI RCATGY 2 cut(s) 664, 857
BstPI GGTNACC 1 cut(s) 803
BstSCI CCNGG 4 cut(s) 254, 413, 544, 642
BstUI CGCG 1 cut(s) 859
BstV1I GCAGC 2 cut(s) 729, 919
BstX2I RGATCY 2 cut(s) 312, 922
BstYI RGATCY 2 cut(s) 312, 922
BsuRI GGCC 2 cut(s) 376, 498
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 2 cut(s) 430, 592
BtsIMutI CAGTG 1 cut(s) 607
Cac8I GCNNGC 2 cut(s) 662, 855
CfoI GCGC 3 cut(s) 675, 832, 859
Cfr13I GGNCC 3 cut(s) 215, 273, 496
CseI GACGC 1 cut(s) 356
Csp6I GTAC 3 cut(s) 20, 51, 553
CviAII CATG 5 cut(s) 23, 146, 661, 854, 987
CviQI GTAC 3 cut(s) 20, 51, 553
DdeI CTNAG 2 cut(s) 6, 172
DpnI GATC 7 cut(s) 88, 123, 267, 314, 372, 399, 924
DpnII GATC 7 cut(s) 86, 121, 265, 312, 370, 397, 922
EaeI YGGCCR 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 215, 273
Eco72I CACGTG 1 cut(s) 458
Eco91I GGTNACC 1 cut(s) 803
EcoNI CCTNNNNNAGG 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 3 cut(s) 254, 413, 642
EcoT14I CCWWGG 1 cut(s) 519
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 5 cut(s) 26, 149, 664, 857, 990
FaqI GGGAC 1 cut(s) 359
FatI CATG 5 cut(s) 22, 145, 660, 853, 986
Fnu4HI GCNGC 2 cut(s) 743, 933
FokI GGATG 2 cut(s) 417, 599
Fsp4HI GCNGC 2 cut(s) 743, 933
FspBI CTAG 1 cut(s) 48
FspI TGCGCA 1 cut(s) 831
GlaI GCGC 3 cut(s) 674, 831, 858
GluI GCNGC 2 cut(s) 743, 933
GsaI CCCAGC 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 676
HaeIII GGCC 2 cut(s) 376, 498
HapII CCGG 1 cut(s) 546
HgaI GACGC 1 cut(s) 356
HhaI GCGC 3 cut(s) 675, 832, 859
Hin1II CATG 5 cut(s) 26, 149, 664, 857, 990
Hin6I GCGC 3 cut(s) 673, 830, 857
HinP1I GCGC 3 cut(s) 673, 830, 857
HinfI GANTC 4 cut(s) 117, 129, 701, 712
HpaII CCGG 1 cut(s) 546
HphI GGTGA 3 cut(s) 217, 560, 815
Hpy166II GTNNAC 1 cut(s) 767
Hpy188I TCNGA 2 cut(s) 14, 778
Hpy188III TCNNGA 5 cut(s) 35, 292, 302, 724, 926
Hpy8I GTNNAC 1 cut(s) 767
HpyAV CCTTC 4 cut(s) 32, 228, 236, 721
HpyCH4III ACNGT 3 cut(s) 82, 782, 809
HpyCH4IV ACGT 2 cut(s) 457, 551
HpyCH4V TGCA 9 cut(s) 143, 161, 185, 605, 745, 844, 920, 935, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 670, 739, 850, 863
HpyF3I CTNAG 2 cut(s) 6, 172
HpySE526I ACGT 2 cut(s) 457, 551
Hsp92II CATG 5 cut(s) 26, 149, 664, 857, 990
HspAI GCGC 3 cut(s) 673, 830, 857
Kzo9I GATC 7 cut(s) 86, 121, 265, 312, 370, 397, 922
Lsp1109I GCAGC 2 cut(s) 729, 919
LweI GCATC 2 cut(s) 130, 577
MaeI CTAG 1 cut(s) 48
MaeII ACGT 2 cut(s) 457, 551
MaeIII GTNAC 3 cut(s) 458, 479, 803
MalI GATC 7 cut(s) 88, 123, 267, 314, 372, 399, 924
MboI GATC 7 cut(s) 86, 121, 265, 312, 370, 397, 922
MboII GAAGA 4 cut(s) 138, 221, 365, 550
MflI RGATCY 2 cut(s) 312, 922
MluCI AATT 7 cut(s) 54, 196, 510, 638, 654, 845, 938
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 801
Mph1103I ATGCAT 1 cut(s) 187
MseI TTAA 4 cut(s) 189, 360, 387, 653
MslI CAYNNNNRTG 3 cut(s) 138, 198, 858
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 4 cut(s) 256, 415, 546, 644
MvaI CCWGG 3 cut(s) 256, 415, 644
MvnI CGCG 1 cut(s) 859
MwoI GCNNNNNNNGC 4 cut(s) 670, 739, 850, 863
NciI CCSGG 1 cut(s) 546
NdeII GATC 7 cut(s) 86, 121, 265, 312, 370, 397, 922
NlaIII CATG 5 cut(s) 26, 149, 664, 857, 990
NlaIV GGNNCC 3 cut(s) 216, 247, 497
NmuCI GTSAC 2 cut(s) 458, 803
NsbI TGCGCA 1 cut(s) 831
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 2 cut(s) 664, 857
NspV TTCGAA 2 cut(s) 514, 704
PaeI GCATGC 2 cut(s) 664, 857
PfeI GAWTC 3 cut(s) 129, 701, 712
PflMI CCANNNNNTGG 1 cut(s) 723
PfoI TCCNGGA 1 cut(s) 413
PkrI GCNGC 2 cut(s) 744, 934
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 1 cut(s) 111
PmaCI CACGTG 1 cut(s) 458
PmlI CACGTG 1 cut(s) 458
PpsI GAGTC 1 cut(s) 111
Ppu21I YACGTR 2 cut(s) 458, 552
PpuMI RGGWCCY 1 cut(s) 215
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 3 cut(s) 254, 413, 642
PspCI CACGTG 1 cut(s) 458
PspEI GGTNACC 1 cut(s) 803
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 3 cut(s) 254, 413, 642
PspN4I GGNNCC 3 cut(s) 216, 247, 497
PspPI GGNCC 3 cut(s) 215, 273, 496
PspPPI RGGWCCY 1 cut(s) 215
PsuI RGATCY 2 cut(s) 312, 922
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 3 cut(s) 21, 52, 554
RsaNI GTAC 3 cut(s) 20, 51, 553
RseI CAYNNNNRTG 3 cut(s) 138, 198, 858
SaqAI TTAA 4 cut(s) 189, 360, 387, 653
SatI GCNGC 2 cut(s) 743, 933
Sau3AI GATC 7 cut(s) 86, 121, 265, 312, 370, 397, 922
Sau96I GGNCC 3 cut(s) 215, 273, 496
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 4 cut(s) 256, 415, 546, 644
SfaNI GCATC 2 cut(s) 130, 577
SfuI TTCGAA 2 cut(s) 514, 704
SinI GGWCC 2 cut(s) 215, 273
SmiMI CAYNNNNRTG 3 cut(s) 138, 198, 858
SmlI CTYRAG 2 cut(s) 302, 926
SmoI CTYRAG 2 cut(s) 302, 926
SphI GCATGC 2 cut(s) 664, 857
Sse9I AATT 7 cut(s) 54, 196, 510, 638, 654, 845, 938
SsiI CCGC 2 cut(s) 108, 866
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 4 cut(s) 254, 413, 544, 642
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 3 cut(s) 82, 782, 809
TaiI ACGT 2 cut(s) 460, 554
TaqI TCGA 4 cut(s) 120, 124, 514, 704
TasI AATT 7 cut(s) 54, 196, 510, 638, 654, 845, 938
TatI WGTACW 2 cut(s) 19, 50
TfiI GAWTC 3 cut(s) 129, 701, 712
Tru1I TTAA 4 cut(s) 189, 360, 387, 653
Tru9I TTAA 4 cut(s) 189, 360, 387, 653
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 2 cut(s) 458, 803
TseI GCWGC 2 cut(s) 742, 932
Tsp45I GTSAC 2 cut(s) 458, 803
TspDTI ATGAA 2 cut(s) 216, 871
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 607
Van91I CCANNNNNTGG 1 cut(s) 723
VpaK11BI GGWCC 2 cut(s) 215, 273
XagI CCTNNNNNAGG 1 cut(s) 614
XapI RAATTY 1 cut(s) 638
XceI RCATGY 2 cut(s) 664, 857
XspI CTAG 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.