Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

78372684 .. 78373130

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG552900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTGAACAAGGAGTGCTTTTCAAACGTGAAGAAGACATGGGATCGACTATGCCGTCTTAATATTAGCAAGCAAATGTGTACCTCCGTCTCCTCAAAACAGCCCAACAACAAAGAGTGGTTTTTGTACTTGAATATGCGCAATCGAGTATGCCGTCTAAACATTAGGGAATTCTGCAAAAGGAGGCCAAAGTGTGAACTTGTGCATGATTATTATCCAGGCTGGCCTCGTAGGACAGTTCCCACCTTGATGAAACCAGTAGTTGTTGGTTCCAAAGTTTATATGTGGGGTGGTATATCGAACCCCAATGTATATTCATCGAACCCCAATGTATATTCCTTTGATCCAGCTACGAGTCCACCCTTCCGTCTCTGCGAGGGTCTGATTTCTAGATTGGTTCCACCCAAGATTTATTTCCCTTACATTATAGTGTTCAGCCTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

148

Amino Acids

17.44

Weight (kDa)

9.76

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	140
AclWI	GGATC	2 cut(s)	51, 338
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	2 cut(s)	82, 128
AgsI	TTSAA	2 cut(s)	24, 133
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	94, 374
AlwI	GGATC	2 cut(s)	51, 338
AoxI	GGCC	2 cut(s)	185, 224
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	41
BceAI	ACGGC	2 cut(s)	39, 138
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	94, 374
BfaI	CTAG	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	271, 399
BmrFI	CCNGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	219
BseJI	GATNNNNATC	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	187, 226
BsmAI	GTCTC	2 cut(s)	94, 374
BsmBI	CGTCTC	2 cut(s)	94, 374
BsnI	GGCC	2 cut(s)	187, 226
Bsp143I	GATC	2 cut(s)	43, 343
BspANI	GGCC	2 cut(s)	187, 226
BspLI	GGNNCC	2 cut(s)	271, 399
BspPI	GGATC	2 cut(s)	51, 338
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	43, 343
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	71, 224
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	46, 346
BstMAI	GTCTC	2 cut(s)	94, 374
BstMBI	GATC	2 cut(s)	43, 343
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	187, 226
Cac8I	GCNNGC	2 cut(s)	71, 224
CfoI	GCGC	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	81, 127
CviAII	CATG	2 cut(s)	39, 206
CviJI	RGCY	6 cut(s)	103, 187, 222, 226, 350, 438
CviKI_1	RGCY	6 cut(s)	103, 187, 222, 226, 350, 438
CviQI	GTAC	2 cut(s)	81, 127
DpnI	GATC	2 cut(s)	45, 345
DpnII	GATC	2 cut(s)	43, 343
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	217
Esp3I	CGTCTC	2 cut(s)	94, 374
FaeI	CATG	2 cut(s)	42, 209
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	2 cut(s)	38, 205
FspBI	CTAG	1 cut(s)	390
FspI	TGCGCA	1 cut(s)	140
GlaI	GCGC	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	187, 226
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	42, 209
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	355
Hpy166II	GTNNAC	3 cut(s)	81, 197, 359
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	1 cut(s)	390
Hpy8I	GTNNAC	3 cut(s)	81, 197, 359
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	177, 205
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	42, 209
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	43, 343
LpnPI	CCDG	5 cut(s)	204, 208, 231, 270, 360
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	27
MalI	GATC	2 cut(s)	45, 345
MboI	GATC	2 cut(s)	43, 343
MboII	GAAGA	2 cut(s)	43, 46
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	5 cut(s)	94, 103, 177, 237, 370
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	2 cut(s)	248, 428
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
NdeII	GATC	2 cut(s)	43, 343
NlaIII	CATG	2 cut(s)	42, 209
NlaIV	GGNNCC	2 cut(s)	271, 399
NsbI	TGCGCA	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	2 cut(s)	52, 151
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	271, 399
RsaI	GTAC	2 cut(s)	82, 128
RsaNI	GTAC	2 cut(s)	81, 127
RseI	CAYNNNNRTG	2 cut(s)	248, 428
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	43, 343
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	4 cut(s)	30, 86, 248, 352
SmiMI	CAYNNNNRTG	2 cut(s)	248, 428
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	1 cut(s)	170
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	46, 145, 299, 320
TasI	AATT	1 cut(s)	170
TatI	WGTACW	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TspDTI	ATGAA	2 cut(s)	266, 306
TspGWI	ACGGA	2 cut(s)	76, 356
XapI	RAATTY	1 cut(s)	170
XbaI	TCTAGA	1 cut(s)	389
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.