FvH4_6g44331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000563
Physical Location & Seq
Reverse (-)
34155956 .. 34156673
718 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44331.t1

Sequence Viewer

Length: 618 bp
ATGGAACCAGTAATCGTTGGTTCCAAAGTTTATATGTGGGGTGGTAATTCGGTATCATCATTATCATCAAATAAAGGCAATATGTGGGGTGGTATGCCGGTCTCATTATCATCATCATATGAAGACAACTTGAATGAATATACCTTTGATCCATCTGGAAGTCCACCCTTTCGTCTCTGCGAGGGTCCGATTTCAAGATTGATTCCACCAGAGTTTCATGACAATTATTCTGACATGCGTCAGATTCCAATTCCAGTGTTGAGCATTGAGGAAAAAATCTATGTTCTTGACCTACCCCGTATTAGGGTTTTTGATCCGGTTCACCAATCCTGGAAAGACCTTCCCCACCTCCCTTGTTTGCCTAATACCGATTTCCGACGGTGCCGCCACTTCTTTTGTGGCCACAAGCTCTTTATTGGCATTGACAGTGTTGATACTGCTGGTCATGATAGGCTGCAGGGTGGTTCATACATTTTCGACAATCGCGATGAGAAATGGGAGGCTACGAACACCATACATTATGATGTTATGAAGAGGTTCAGGAGTTCCGCCATGGAATTTGAGGGATTTTTGATTGCCGTGATAGAGTATGAACTGTATAATGAGGATAAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.56

Weight (kDa)

5.21

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 381
AccII CGCG 1 cut(s) 486
AciI CCGC 2 cut(s) 385, 549
AclWI GGATC 2 cut(s) 143, 308
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 303, 304
AgsI TTSAA 2 cut(s) 133, 195
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 1 cut(s) 409
AluI AGCT 1 cut(s) 409
Alw26I GTCTC 2 cut(s) 106, 179
AlwI GGATC 2 cut(s) 143, 308
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 1 cut(s) 454
ApoI RAATTY 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 185
BalI TGGCCA 1 cut(s) 402
BanI GGYRCC 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 441
BccI CCATC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 1 cut(s) 331
BcoDI GTCTC 2 cut(s) 106, 179
BfmI CTRYAG 1 cut(s) 455
BisI GCNGC 2 cut(s) 385, 455
BlsI GCNGC 2 cut(s) 386, 456
Bme1390I CCNGG 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 4 cut(s) 6, 22, 186, 383
BmrFI CCNGG 1 cut(s) 331
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 552
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 304
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 8, 254
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 552
BseLI CCNNNNNNNGG 2 cut(s) 303, 304
BseNI ACTGG 2 cut(s) 8, 254
BseXI GCAGC 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 1 cut(s) 402
BshNI GGYRCC 1 cut(s) 381
BsiSI CCGG 2 cut(s) 98, 317
BslI CCNNNNNNNGG 2 cut(s) 303, 304
BsmAI GTCTC 2 cut(s) 106, 179
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 148, 313
Bsp19I CCATGG 1 cut(s) 552
Bsp68I TCGCGA 1 cut(s) 486
BspACI CCGC 2 cut(s) 385, 549
BspANI GGCC 1 cut(s) 402
BspFNI CGCG 1 cut(s) 486
BspHI TCATGA 2 cut(s) 217, 445
BspLI GGNNCC 4 cut(s) 6, 22, 186, 383
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 2 cut(s) 143, 308
BspT107I GGYRCC 1 cut(s) 381
BspTNI GGTCTC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 2 cut(s) 8, 254
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 2 cut(s) 148, 313
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 3 cut(s) 381, 428, 597
Bst6I CTCTTC 1 cut(s) 527
BstDSI CCRYGG 1 cut(s) 552
BstFNI CGCG 1 cut(s) 486
BstKTI GATC 2 cut(s) 151, 316
BstMAI GTCTC 2 cut(s) 106, 179
BstMBI GATC 2 cut(s) 148, 313
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 238
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 455
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 441
BstV2I GAAGAC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 402
BtgI CCRYGG 1 cut(s) 552
BtgZI GCGATG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 261, 433
BtuMI TCGCGA 1 cut(s) 486
CciI TCATGA 2 cut(s) 217, 445
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 227
CspCI CAANNNNNGTGG 4 cut(s) 335, 370, 377, 412
CviAII CATG 4 cut(s) 218, 235, 446, 553
CviJI RGCY 4 cut(s) 402, 409, 454, 503
CviKI_1 RGCY 4 cut(s) 402, 409, 454, 503
DpnI GATC 2 cut(s) 150, 315
DpnII GATC 2 cut(s) 148, 313
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
EciI GGCGGA 1 cut(s) 538
Eco130I CCWWGG 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 552
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 4 cut(s) 221, 238, 449, 556
FatI CATG 4 cut(s) 217, 234, 445, 552
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 385, 455
Fsp4HI GCNGC 2 cut(s) 385, 455
GluI GCNGC 2 cut(s) 385, 455
HaeIII GGCC 1 cut(s) 402
HapII CCGG 2 cut(s) 98, 317
HgaI GACGC 1 cut(s) 227
Hin1II CATG 4 cut(s) 221, 238, 449, 556
HinfI GANTC 2 cut(s) 202, 244
HpaII CCGG 2 cut(s) 98, 317
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 164, 322
Hpy188I TCNGA 4 cut(s) 189, 232, 243, 377
Hpy188III TCNNGA 7 cut(s) 156, 195, 218, 287, 446, 485, 541
Hpy8I GTNNAC 2 cut(s) 164, 322
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 3 cut(s) 381, 428, 597
HpyCH4V TGCA 1 cut(s) 457
Hsp92II CATG 4 cut(s) 221, 238, 449, 556
Kzo9I GATC 2 cut(s) 148, 313
Lsp1109I GCAGC 1 cut(s) 441
MalI GATC 2 cut(s) 150, 315
MboI GATC 2 cut(s) 148, 313
MboII GAAGA 2 cut(s) 134, 544
MlsI TGGCCA 1 cut(s) 402
MluCI AATT 4 cut(s) 46, 223, 249, 557
MluNI TGGCCA 1 cut(s) 402
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 7 cut(s) 175, 262, 359, 493, 528, 556, 598
Mox20I TGGCCA 1 cut(s) 402
MroXI GAANNNNTTC 1 cut(s) 536
MscI TGGCCA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 522
Msp20I TGGCCA 1 cut(s) 402
MspI CCGG 2 cut(s) 98, 317
MspR9I CCNGG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 486
NcoI CCATGG 1 cut(s) 552
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 148, 313
NlaIII CATG 4 cut(s) 221, 238, 449, 556
NlaIV GGNNCC 4 cut(s) 6, 22, 186, 383
NruI TCGCGA 1 cut(s) 486
NspI RCATGY 1 cut(s) 238
PagI TCATGA 2 cut(s) 217, 445
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 2 cut(s) 202, 244
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 2 cut(s) 386, 456
PshAI GACNNNNGTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 4 cut(s) 6, 22, 186, 383
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 459
RruI TCGCGA 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 522
SatI GCNGC 2 cut(s) 385, 455
Sau3AI GATC 2 cut(s) 148, 313
Sau96I GGNCC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 331
SetI ASST 6 cut(s) 146, 294, 342, 351, 411, 539
SfcI CTRYAG 1 cut(s) 455
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 522
Sse9I AATT 4 cut(s) 46, 223, 249, 557
SsiI CCGC 2 cut(s) 385, 549
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 3 cut(s) 381, 428, 597
TaqI TCGA 1 cut(s) 477
TasI AATT 4 cut(s) 46, 223, 249, 557
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 2 cut(s) 202, 244
TscAI CASTG 2 cut(s) 261, 433
TseI GCWGC 1 cut(s) 454
TspDTI ATGAA 6 cut(s) 135, 150, 206, 456, 545, 606
TspRI CASTG 2 cut(s) 261, 433
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 557
XceI RCATGY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.