Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000955.1

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

238358 .. 239221

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000955.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgaaaccagtagttgttggttccaaagtttatatgtggggtggtgtatggaaccccaatgtatattcatcgaaccccaatgtatattcctttgatccagctacgagtccacccttccgtctctgcgagggtctgatttccagattggttccacccaagattgatttcccttacattatagtgttcagccttgaggagaaaatctatgtacttgaagaagatctatcccattttagggtttttgatacggttcaccaatcctggaaagaccttcctcaccccccttatttgcctaatactgatccccgagtgtctgactactgcgtttgcagccacatactctacatcagtaccggacggaccggaccagacatttcattcatttttgacactcttgaagagaaatgggaggatgcgaagacaatccataatggtgttacagagagattcttggctttcacagaatttgagggatttttaattgccgtgacatcgtatatgaataaggtcgttgcttataagttggattcaaatggaatccccaaccctgagtcgtatcaagtgctacgtgagatatcttctacaggagagatggctttcttgggtaaatgtgatggtggccgactgtggttggtgaattgtatccaggatgactcttataaccgtatgtataatgccacacaggtaatagtgtttcaagcttccatctcagcaaaacttgatggcaatcaagctctctctgtagaaatcgaggctcgaaaatttctcgattttgaaccttccaattattgctcgtcagctttcactatgtgccatgatctggggcaagctcgatcctcactgagaaagaaaaaaaagcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

32.66

Weight (kDa)

5.67

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	519, 660
AccB7I	CCANNNNNTGG	1 cut(s)	820
AclWI	GGATC	3 cut(s)	89, 296, 828
AcoI	YGGCCR	1 cut(s)	619
AcsI	RAATTY	2 cut(s)	464, 761
AdeI	CACNNNGTG	1 cut(s)	810
AfaI	GTAC	2 cut(s)	210, 352
AfiI	CCNNNNNNNGG	3 cut(s)	234, 235, 820
AgsI	TTSAA	5 cut(s)	215, 398, 531, 698, 776
AjnI	CCWGG	2 cut(s)	260, 645
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	5 cut(s)	101, 701, 734, 800, 830
AluI	AGCT	5 cut(s)	101, 701, 734, 800, 830
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	3 cut(s)	89, 296, 828
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	2 cut(s)	464, 761
AspS9I	GGNCC	2 cut(s)	360, 365
AsuHPI	GGTGA	3 cut(s)	245, 269, 646
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	360, 365
BaeI	ACNNNNGTAYC	2 cut(s)	334, 367
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	4 cut(s)	586, 608, 713, 716
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	2 cut(s)	262, 647
BciVI	GTATCC	1 cut(s)	653
BcoDI	GTCTC	1 cut(s)	125
BfmI	CTRYAG	2 cut(s)	582, 741
BfuI	GTATCC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	262, 647
Bme18I	GGWCC	2 cut(s)	360, 365
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	360, 365
BmiI	GGNNCC	3 cut(s)	22, 53, 150
BmrFI	CCNGG	2 cut(s)	262, 647
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	726
BsaWI	WCCGGW	2 cut(s)	353, 362
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 235, 820
Bse1I	ACTGG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	262, 647
BseGI	GGATG	2 cut(s)	418, 655
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	3 cut(s)	234, 235, 820
BseMII	CTCAG	3 cut(s)	540, 723, 833
BseNI	ACTGG	1 cut(s)	8
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	342
BshFI	GGCC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	2 cut(s)	354, 363
BslI	CCNNNNNNNGG	3 cut(s)	234, 235, 820
BsmAI	GTCTC	1 cut(s)	125
BsmBI	CGTCTC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	621
BsoBI	CYCGRG	1 cut(s)	306
Bsp143I	GATC	5 cut(s)	94, 220, 301, 817, 833
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	3 cut(s)	541, 722, 834
BspLI	GGNNCC	3 cut(s)	22, 53, 150
BspPI	GGATC	3 cut(s)	89, 296, 828
BsrI	ACTGG	1 cut(s)	8
BssMI	GATC	5 cut(s)	94, 220, 301, 817, 833
Bst2UI	CCWGG	2 cut(s)	262, 647
Bst4CI	ACNGT	3 cut(s)	250, 627, 665
Bst6I	CTCTTC	1 cut(s)	393
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	828
BstDEI	CTNAG	3 cut(s)	549, 709, 842
BstF5I	GGATG	2 cut(s)	418, 655
BstKTI	GATC	5 cut(s)	97, 223, 304, 820, 836
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	5 cut(s)	94, 220, 301, 817, 833
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	2 cut(s)	262, 647
BstSCI	CCNGG	2 cut(s)	260, 645
BstSFI	CTRYAG	2 cut(s)	582, 741
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	621
BtsCI	GGATG	2 cut(s)	418, 655
BtsIMutI	CAGTG	1 cut(s)	839
Cac8I	GCNNGC	1 cut(s)	828
Cfr13I	GGNCC	2 cut(s)	360, 365
CpoI	CGGWCCG	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	209, 351
CspI	CGGWCCG	1 cut(s)	360
CviAII	CATG	1 cut(s)	815
CviQI	GTAC	2 cut(s)	209, 351
DdeI	CTNAG	3 cut(s)	549, 709, 842
DpnI	GATC	5 cut(s)	96, 222, 303, 819, 835
DpnII	GATC	5 cut(s)	94, 220, 301, 817, 833
DraIII	CACNNNGTG	1 cut(s)	810
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	2 cut(s)	360, 365
Eco88I	CYCGRG	1 cut(s)	306
EcoRII	CCWGG	2 cut(s)	260, 645
EcoRV	GATATC	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	1 cut(s)	818
FatI	CATG	1 cut(s)	814
Fnu4HI	GCNGC	1 cut(s)	331
FokI	GGATG	2 cut(s)	425, 662
Fsp4HI	GCNGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	2 cut(s)	354, 363
Hin1II	CATG	1 cut(s)	818
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	6 cut(s)	106, 447, 527, 537, 551, 653
HpaII	CCGG	2 cut(s)	354, 363
HphI	GGTGA	3 cut(s)	245, 269, 646
Hpy166II	GTNNAC	2 cut(s)	110, 253
Hpy188I	TCNGA	2 cut(s)	135, 316
Hpy188III	TCNNGA	3 cut(s)	141, 395, 767
Hpy8I	GTNNAC	2 cut(s)	110, 253
HpyAV	CCTTC	3 cut(s)	124, 281, 789
HpyCH4III	ACNGT	3 cut(s)	250, 627, 665
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	3 cut(s)	549, 709, 842
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	1 cut(s)	818
Kzo9I	GATC	5 cut(s)	94, 220, 301, 817, 833
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	2 cut(s)	436, 487
MalI	GATC	5 cut(s)	96, 222, 303, 819, 835
MboI	GATC	5 cut(s)	94, 220, 301, 817, 833
MboII	GAAGA	5 cut(s)	227, 230, 410, 430, 570
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	5 cut(s)	464, 480, 637, 761, 784
MlyI	GAGTC	3 cut(s)	115, 560, 647
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	7 cut(s)	121, 187, 285, 403, 463, 745, 847
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	2 cut(s)	179, 432
MspI	CCGG	2 cut(s)	354, 363
MspR9I	CCNGG	2 cut(s)	262, 647
MvaI	CCWGG	2 cut(s)	262, 647
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	5 cut(s)	94, 220, 301, 817, 833
NlaIII	CATG	1 cut(s)	818
NlaIV	GGNNCC	3 cut(s)	22, 53, 150
NmuCI	GTSAC	1 cut(s)	487
PfeI	GAWTC	3 cut(s)	447, 527, 537
PflMI	CCANNNNNTGG	1 cut(s)	820
PfoI	TCCNGGA	2 cut(s)	260, 645
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	3 cut(s)	114, 559, 647
PpsI	GAGTC	3 cut(s)	114, 559, 647
Ppu21I	YACGTR	1 cut(s)	569
PsiI	TTATAA	2 cut(s)	519, 660
Psp6I	CCWGG	2 cut(s)	260, 645
PspGI	CCWGG	2 cut(s)	260, 645
PspN4I	GGNNCC	3 cut(s)	22, 53, 150
PspPI	GGNCC	2 cut(s)	360, 365
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	210, 352
RsaNI	GTAC	2 cut(s)	209, 351
RseI	CAYNNNNRTG	2 cut(s)	179, 432
Rsr2I	CGGWCCG	1 cut(s)	360
RsrII	CGGWCCG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	5 cut(s)	94, 220, 301, 817, 833
Sau96I	GGNCC	2 cut(s)	360, 365
SchI	GAGTC	3 cut(s)	115, 560, 647
ScrFI	CCNGG	2 cut(s)	262, 647
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	2 cut(s)	582, 741
SinI	GGWCC	2 cut(s)	360, 365
SmiMI	CAYNNNNRTG	2 cut(s)	179, 432
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	5 cut(s)	464, 480, 637, 761, 784
StyD4I	CCNGG	2 cut(s)	260, 645
TaaI	ACNGT	3 cut(s)	250, 627, 665
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	5 cut(s)	71, 750, 757, 768, 832
TasI	AATT	5 cut(s)	464, 480, 637, 761, 784
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	3 cut(s)	447, 527, 537
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	1 cut(s)	846
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	5 cut(s)	17, 57, 366, 370, 515
TspGWI	ACGGA	2 cut(s)	107, 373
TspRI	CASTG	1 cut(s)	846
Van91I	CCANNNNNTGG	1 cut(s)	820
VpaK11BI	GGWCC	2 cut(s)	360, 365
XapI	RAATTY	2 cut(s)	464, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.