Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

34159280 .. 34160810

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44333.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTGGAAAACGGTGCTGAAGAGGGCATGGTTTTCAAACGTTAAGAAGACGTTTGATCGAGTCGATCGACTACACCGTCTTAATCTTAGCAGGCAACTATGTAACCATGTCTCTACAAAGCACGAGTATGATAAACCAAAACAGTCCGAGAAGGAATGGTTTTTGTACTTGCAGATGGATAACGGCTTATACCGTCTAAATATCAAGGAATTTTGCGAAAAGACCTCTTCCAATGTAGAGATGATATACGGGTGTCGTAAGTTAAGAGGCTATCCGGAGGAAATTGAATTTCTGCATAATAGTAGTTTTCTTGGCTATCCTTCTGGGACTGCAATTCCCTTCGGCATGCGATCAGTAATTGTTGATTCTAAGGTTTATATGATCGGTGGTTATAAGGATCCTTCTGATTCAGTACGCAACTTGGATGTGTACTCTTTTGATCCCACTGATCCAGCTAGGGCTCCATCCTTCCGTCTCTGCGAGGGTCCGATTTCCAGATTGATCCCACCCTTCATCTTTGTCCCTCCATATGAAGCTTGTAGGGTGTTCAGCATAGAAGGCAAAATTTATGTTCTGGCTCCAGTACCAGCACATTGTCAGCCACTTCAAGATGTGGTGACTTTTTTTAGGGTTTTCGATCCGGTTCAGCAATCCTTCAAAGATCTTCCTCAGCCTCCTTATTCGCCTAATGCTAAACCGTATGTGCATGACCACTTCGTTTGTGGTCACAAGCTTTTTATCCGTACTACAAATGTTGACAATGGTTATAGGGATAGCCTTGGTTTATACATTTTTGACACTCGTGAAGAGAAATGGAAGGCTGCATATCATGACAACATCATCGATTCAGGTAATCATCATTATGAGGAGTGCGTGGCTTTTACAGAATTTGAAGGGTTTTTAATTTTAGTTCGAAGTGGACATCTGATTTCTGATAGTAATACTCTTGTTTCTTATAAGTTGGATTCCGATGGGATCCCCGACCCTGAGTCATATCAGGAACTACATGAGCTTCACTTCACGGACTCTGATGAGTTAAATTTCGATAACATTTTCTTAGGTAAATGTGACGGTGGACGTATGTGGGTGGTGCAGATGAGTATGAACAGGTTTAAAAAGAAAAGGAATGAAATAATTCGCACATATTTGAGAGTGTTCCAAGTTTCCATCTCAACTGATGTTGATGGAAATCAAAGTCTCTCAGTACAAATCGAGGCTGAAGAATTTCTCAATGTTAAAGGTTATGATTATTGCACGTCAGCTTTTGCCATTTGCCATCATCCAAACAGGATCGAGTCATGCTTGCCATCATCCAAGCAAGATCGAGTTACACTGAATACAGATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

450

Amino Acids

52.05

Weight (kDa)

6.16

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	393, 957
AasI	GACNNNNNNGTC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	274
AclI	AACGTT	1 cut(s)	39
AclWI	GGATC	9 cut(s)	392, 405, 434, 443, 496, 632, 970, 983, 1298
AcsI	RAATTY	6 cut(s)	209, 287, 564, 887, 1039, 1223
AcuI	CTGAAG	2 cut(s)	38, 1239
AfaI	GTAC	6 cut(s)	167, 414, 431, 585, 745, 1206
AgsI	TTSAA	5 cut(s)	36, 287, 608, 658, 893
AhdI	GACNNNNNGTC	1 cut(s)	988
AjiI	CACGTC	1 cut(s)	1257
AluBI	AGCT	5 cut(s)	455, 536, 733, 1012, 1262
AluI	AGCT	5 cut(s)	455, 536, 733, 1012, 1262
Alw26I	GTCTC	3 cut(s)	115, 479, 1202
AlwI	GGATC	9 cut(s)	392, 405, 434, 443, 496, 632, 970, 983, 1298
Aor13HI	TCCGGA	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	821
ApoI	RAATTY	6 cut(s)	209, 287, 564, 887, 1039, 1223
Asp700I	GAANNNNTTC	2 cut(s)	1134, 1224
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	628
AsuII	TTCGAA	1 cut(s)	913
AvaII	GGWCC	1 cut(s)	485
BamHI	GGATCC	2 cut(s)	397, 975
BanII	GRGCYC	1 cut(s)	463
BauI	CACGAG	2 cut(s)	122, 801
BbsI	GAAGAC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	808
BccI	CCATC	7 cut(s)	169, 472, 965, 1175, 1178, 1284, 1315
BceAI	ACGGC	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	115, 479, 1202
BfaI	CTAG	1 cut(s)	456
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	1 cut(s)	822
BlsI	GCNGC	1 cut(s)	823
Bme18I	GGWCC	1 cut(s)	485
BmeRI	GACNNNNNGTC	1 cut(s)	988
BmgBI	CACGTC	1 cut(s)	1257
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	5 cut(s)	399, 462, 486, 579, 977
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	669
Bpu14I	TTCGAA	1 cut(s)	913
Bsa29I	ATCGAT	1 cut(s)	843
BsaBI	GATNNNNATC	1 cut(s)	1188
BsaJI	CCNNGG	1 cut(s)	778
BsaWI	WCCGGW	2 cut(s)	274, 640
Bse1I	ACTGG	1 cut(s)	581
Bse8I	GATNNNNATC	1 cut(s)	1188
BseAI	TCCGGA	1 cut(s)	274
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	4 cut(s)	430, 464, 1279, 1310
BseJI	GATNNNNATC	1 cut(s)	1188
BseMII	CTCAG	3 cut(s)	683, 978, 1215
BseNI	ACTGG	1 cut(s)	581
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	1 cut(s)	808
BsgI	GTGCAG	1 cut(s)	1112
Bsh1285I	CGRYCG	1 cut(s)	67
BshVI	ATCGAT	1 cut(s)	843
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	275, 641
BslFI	GGGAC	2 cut(s)	340, 506
BsmAI	GTCTC	3 cut(s)	115, 479, 1202
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	2 cut(s)	340, 506
Bsp119I	TTCGAA	1 cut(s)	913
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp13I	TCCGGA	1 cut(s)	274
BspCNI	CTCAG	3 cut(s)	682, 979, 1214
BspDI	ATCGAT	1 cut(s)	843
BspEI	TCCGGA	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	5 cut(s)	399, 462, 486, 579, 977
BspPI	GGATC	9 cut(s)	392, 405, 434, 443, 496, 632, 970, 983, 1298
BspT104I	TTCGAA	1 cut(s)	913
BsrI	ACTGG	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	778
BssSI	CACGAG	2 cut(s)	122, 801
BssT1I	CCWWGG	1 cut(s)	778
Bst2BI	CACGAG	2 cut(s)	122, 801
Bst4CI	ACNGT	6 cut(s)	13, 77, 144, 194, 699, 1073
Bst6I	CTCTTC	3 cut(s)	14, 232, 801
BstBI	TTCGAA	1 cut(s)	913
BstC8I	GCNNGC	3 cut(s)	92, 347, 1304
BstDEI	CTNAG	6 cut(s)	86, 369, 669, 987, 1057, 1201
BstF5I	GGATG	4 cut(s)	430, 464, 1279, 1310
BstMAI	GTCTC	3 cut(s)	115, 479, 1202
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	808
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	3 cut(s)	397, 661, 975
BstYI	RGATCY	3 cut(s)	397, 661, 975
Bsu15I	ATCGAT	1 cut(s)	843
BsuTUI	ATCGAT	1 cut(s)	843
BtrI	CACGTC	1 cut(s)	1257
BtsCI	GGATG	4 cut(s)	430, 464, 1279, 1310
BtsIMutI	CAGTG	2 cut(s)	444, 1331
Cac8I	GCNNGC	3 cut(s)	92, 347, 1304
CciI	TCATGA	1 cut(s)	829
Cfr13I	GGNCC	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	843
Csp6I	GTAC	6 cut(s)	166, 413, 430, 584, 744, 1205
CspCI	CAANNNNNGTGG	2 cut(s)	701, 736
CviAII	CATG	7 cut(s)	27, 107, 346, 707, 830, 1007, 1299
CviQI	GTAC	6 cut(s)	166, 413, 430, 584, 744, 1205
DdeI	CTNAG	6 cut(s)	86, 369, 669, 987, 1057, 1201
DraI	TTTAAA	1 cut(s)	1114
DrdI	GACNNNNNNGTC	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	988
DseDI	GACNNNNNNGTC	1 cut(s)	75
Eam1104I	CTCTTC	3 cut(s)	14, 232, 801
Eam1105I	GACNNNNNGTC	1 cut(s)	988
EarI	CTCTTC	3 cut(s)	14, 232, 801
Eco130I	CCWWGG	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	463
Eco32I	GATATC	1 cut(s)	1345
Eco47I	GGWCC	1 cut(s)	485
Eco57I	CTGAAG	2 cut(s)	38, 1239
EcoRV	GATATC	1 cut(s)	1345
EcoT14I	CCWWGG	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	778
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	7 cut(s)	30, 110, 349, 710, 833, 1010, 1302
FaqI	GGGAC	2 cut(s)	340, 506
FatI	CATG	7 cut(s)	26, 106, 345, 706, 829, 1006, 1298
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	822
FokI	GGATG	4 cut(s)	437, 451, 1266, 1297
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	822
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	1 cut(s)	822
GsuI	CTGGAG	1 cut(s)	564
HapII	CCGG	2 cut(s)	275, 641
Hin1II	CATG	7 cut(s)	30, 110, 349, 710, 833, 1010, 1302
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	2 cut(s)	534, 731
HinfI	GANTC	8 cut(s)	60, 365, 407, 845, 965, 989, 1025, 1295
HpaII	CCGG	2 cut(s)	275, 641
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	4 cut(s)	430, 757, 920, 1076
Hpy188I	TCNGA	8 cut(s)	148, 406, 489, 927, 934, 970, 1030, 1349
Hpy188III	TCNNGA	6 cut(s)	275, 495, 608, 803, 830, 998
Hpy8I	GTNNAC	4 cut(s)	430, 757, 920, 1076
HpyCH4III	ACNGT	6 cut(s)	13, 77, 144, 194, 699, 1073
HpyCH4IV	ACGT	4 cut(s)	39, 50, 1078, 1256
HpyCH4V	TGCA	7 cut(s)	172, 295, 332, 706, 824, 1093, 1254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	6 cut(s)	86, 369, 669, 987, 1057, 1201
HpySE526I	ACGT	4 cut(s)	39, 50, 1078, 1256
Hsp92II	CATG	7 cut(s)	30, 110, 349, 710, 833, 1010, 1302
Kpn2I	TCCGGA	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	466, 583
Lsp1109I	GCAGC	1 cut(s)	808
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	4 cut(s)	39, 50, 1078, 1256
MaeIII	GTNAC	5 cut(s)	101, 616, 725, 1067, 1327
MboII	GAAGA	6 cut(s)	31, 58, 219, 656, 818, 1232
MflI	RGATCY	3 cut(s)	397, 661, 975
MhlI	GDGCHC	1 cut(s)	463
MlyI	GAGTC	4 cut(s)	69, 998, 1019, 1304
MmeI	TCCRAC	1 cut(s)	942
MroI	TCCGGA	1 cut(s)	274
MroXI	GAANNNNTTC	2 cut(s)	1134, 1224
MseI	TTAA	7 cut(s)	42, 81, 263, 902, 1037, 1113, 1236
MslI	CAYNNNNRTG	2 cut(s)	126, 861
MspI	CCGG	2 cut(s)	275, 641
MwoI	GCNNNNNNNGC	1 cut(s)	558
NdeI	CATATG	1 cut(s)	529
NlaIII	CATG	7 cut(s)	30, 110, 349, 710, 833, 1010, 1302
NlaIV	GGNNCC	5 cut(s)	399, 462, 486, 579, 977
NmuCI	GTSAC	3 cut(s)	616, 725, 1067
NspI	RCATGY	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	913
PaeI	GCATGC	1 cut(s)	349
PagI	TCATGA	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	2 cut(s)	64, 73
PdmI	GAANNNNTTC	2 cut(s)	1134, 1224
PfeI	GAWTC	4 cut(s)	365, 407, 845, 965
PkrI	GCNGC	1 cut(s)	823
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	4 cut(s)	68, 997, 1019, 1303
PpsI	GAGTC	4 cut(s)	68, 997, 1019, 1303
PsiI	TTATAA	2 cut(s)	393, 957
Psp1406I	AACGTT	1 cut(s)	39
PspN4I	GGNNCC	5 cut(s)	399, 462, 486, 579, 977
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	3 cut(s)	397, 661, 975
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	6 cut(s)	167, 414, 431, 585, 745, 1206
RsaNI	GTAC	6 cut(s)	166, 413, 430, 584, 744, 1205
RseI	CAYNNNNRTG	2 cut(s)	126, 861
SaqAI	TTAA	7 cut(s)	42, 81, 263, 902, 1037, 1113, 1236
SatI	GCNGC	1 cut(s)	822
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	4 cut(s)	69, 998, 1019, 1304
SduI	GDGCHC	1 cut(s)	463
SfuI	TTCGAA	1 cut(s)	913
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	126, 861
SphI	GCATGC	1 cut(s)	349
SspMI	CTAG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	6 cut(s)	13, 77, 144, 194, 699, 1073
TaiI	ACGT	4 cut(s)	42, 53, 1081, 1259
TatI	WGTACW	3 cut(s)	165, 429, 1204
TfiI	GAWTC	4 cut(s)	365, 407, 845, 965
Tru1I	TTAA	7 cut(s)	42, 81, 263, 902, 1037, 1113, 1236
Tru9I	TTAA	7 cut(s)	42, 81, 263, 902, 1037, 1113, 1236
TscAI	CASTG	2 cut(s)	451, 1338
TseFI	GTSAC	3 cut(s)	616, 725, 1067
TseI	GCWGC	1 cut(s)	821
Tsp45I	GTSAC	3 cut(s)	616, 725, 1067
TspDTI	ATGAA	4 cut(s)	502, 546, 1118, 1143
TspGWI	ACGGA	3 cut(s)	461, 731, 1037
TspRI	CASTG	2 cut(s)	451, 1338
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	6 cut(s)	209, 287, 564, 887, 1039, 1223
XceI	RCATGY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XmnI	GAANNNNTTC	2 cut(s)	1134, 1224
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.