RLG00000008231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000563
Physical Location & Seq
Reverse (-)
27482094 .. 27483065
972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008231

Sequence Viewer

Length: 867 bp
ATGCCCAACTTGGATATTTATGCATTTAATCACAATTATGAAACAGAAGAGGGTCCTTCTATCGCCCTCTGCCAATGTGAAGGTTCCATTCCCAGGTTGATTGATCCACGGACTAAAACCATTCCTATCACGATTGCCCTTGAGGATAAGATCTATGTTCTGGCAAAAAGACCATACTTGGGGGACGCAGAAGAACCTAGTGATGATGATCGGCCACCACTTTTTAAGATTTTTGATCCCCTCAAACAATCGTGGAAACACCTCCTTCATCCCCCCTGCTATAATATATCATCACGTGACATCGAGCCTTATGTGTGCAACTACTTCTCTTGGGGCCACAAGCTCAGTATTCGTACCGAGGCAAAGAAAAAAAAGAACCTCGGCACATACATTTTTGACACTCTCCAAGAGAAATGGGAGGATGCCAAGAATATCAGTGCAATCCTTGATGAGGGTTTTAGGGTTGTGGCAGAATTCCAGGGACTTTTAATTGGCATGCCTTATAAGCGCCAAGAACTTGTTACTTACCATTTGGATTCGAATGGGATTCCCAAACTCTCGAAGGATAGTATGCAATTTTGGCATGCGCGTGTAGCGATGTTTCGTGTTTTCATCTCTAATGACTTTGATGGAAATCAAGTCCTCTGTGCAGATCTTGAGGCTGCACAATTTTTTCAGTTTGATAGATTTATTAGCTCTGCTTTCACTTATCATGGCCCAAACTCTCGAAGGTGCTACACGAGCTGCAAGAGATATTTAGCTCTTGTTTACTTGTCTCCGACTGTTTTCTTGGTAAATATGATGGTGATCGTATGTGGCTGGTGGATTTTGCACAGGATTGTATGCAATTTTGGCATGCACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

33.44

Weight (kDa)

6.75

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 30 - 143 2.3e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AccII CGCG 1 cut(s) 589
AclWI GGATC 2 cut(s) 98, 230
AcoI YGGCCR 1 cut(s) 212
AcsI RAATTY 1 cut(s) 473
AcvI CACGTG 2 cut(s) 296, 862
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 3 cut(s) 93, 179, 451
AflIII ACRYGT 1 cut(s) 861
AjnI CCWGG 2 cut(s) 92, 477
AluBI AGCT 4 cut(s) 343, 696, 744, 761
AluI AGCT 4 cut(s) 343, 696, 744, 761
Alw26I GTCTC 1 cut(s) 780
AlwI GGATC 2 cut(s) 98, 230
AoxI GGCC 3 cut(s) 212, 334, 715
ApeKI GCWGC 2 cut(s) 662, 744
ApoI RAATTY 1 cut(s) 473
AspLEI GCGC 2 cut(s) 510, 589
AspS9I GGNCC 3 cut(s) 53, 334, 716
AsuHPI GGTGA 1 cut(s) 817
AsuII TTCGAA 1 cut(s) 539
AvaII GGWCC 1 cut(s) 53
BauI CACGAG 1 cut(s) 739
BbrPI CACGTG 2 cut(s) 296, 862
BbvI GCAGC 2 cut(s) 649, 731
BccI CCATC 2 cut(s) 623, 796
BciT130I CCWGG 2 cut(s) 94, 479
BcoDI GTCTC 1 cut(s) 780
BfaI CTAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 511
BglII AGATCT 2 cut(s) 150, 652
BisI GCNGC 2 cut(s) 663, 745
BlsI GCNGC 2 cut(s) 664, 746
Bme1390I CCNGG 2 cut(s) 94, 479
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 3 cut(s) 53, 334, 716
BmiI GGNNCC 3 cut(s) 54, 85, 335
BmrFI CCNGG 2 cut(s) 94, 479
BmsI GCATC 1 cut(s) 412
Bpu14I TTCGAA 1 cut(s) 539
BpuEI CTTGAG 2 cut(s) 161, 677
BsaAI YACGTR 2 cut(s) 296, 862
BsaBI GATNNNNATC 3 cut(s) 207, 633, 806
BsaJI CCNNGG 5 cut(s) 92, 107, 357, 379, 478
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 179, 451
Bse8I GATNNNNATC 3 cut(s) 207, 633, 806
BseBI CCWGG 2 cut(s) 94, 479
BseDI CCNNGG 5 cut(s) 92, 107, 357, 379, 478
BseGI GGATG 2 cut(s) 268, 427
BseJI GATNNNNATC 3 cut(s) 207, 633, 806
BseLI CCNNNNNNNGG 3 cut(s) 93, 179, 451
BseMII CTCAG 1 cut(s) 358
BseXI GCAGC 2 cut(s) 649, 731
BsgI GTGCAG 2 cut(s) 648, 669
Bsh1236I CGCG 1 cut(s) 589
BshFI GGCC 3 cut(s) 214, 336, 717
BslFI GGGAC 2 cut(s) 197, 495
BslI CCNNNNNNNGG 3 cut(s) 93, 179, 451
BsmAI GTCTC 1 cut(s) 780
BsmFI GGGAC 2 cut(s) 197, 495
BsnI GGCC 3 cut(s) 214, 336, 717
Bsp119I TTCGAA 1 cut(s) 539
Bsp143I GATC 6 cut(s) 103, 150, 208, 235, 652, 807
BspANI GGCC 3 cut(s) 214, 336, 717
BspCNI CTCAG 1 cut(s) 357
BspFNI CGCG 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 54, 85, 335
BspPI GGATC 2 cut(s) 98, 230
BspT104I TTCGAA 1 cut(s) 539
BssECI CCNNGG 5 cut(s) 92, 107, 357, 379, 478
BssMI GATC 6 cut(s) 103, 150, 208, 235, 652, 807
BssSI CACGAG 1 cut(s) 739
Bst2BI CACGAG 1 cut(s) 739
Bst2UI CCWGG 2 cut(s) 94, 479
Bst4CI ACNGT 1 cut(s) 784
Bst6I CTCTTC 1 cut(s) 42
BstBAI YACGTR 2 cut(s) 296, 862
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 3 cut(s) 497, 585, 857
BstDEI CTNAG 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 107
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 2 cut(s) 268, 427
BstFNI CGCG 1 cut(s) 589
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 2 cut(s) 510, 589
BstKTI GATC 6 cut(s) 106, 153, 211, 238, 655, 810
BstMAI GTCTC 1 cut(s) 780
BstMBI GATC 6 cut(s) 103, 150, 208, 235, 652, 807
BstMWI GCNNNNNNNGC 5 cut(s) 505, 580, 593, 741, 852
BstNI CCWGG 2 cut(s) 94, 479
BstNSI RCATGY 3 cut(s) 499, 587, 859
BstSCI CCNGG 2 cut(s) 92, 477
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 2 cut(s) 649, 731
BstX2I RGATCY 2 cut(s) 150, 652
BstYI RGATCY 2 cut(s) 150, 652
BsuRI GGCC 3 cut(s) 214, 336, 717
BtgI CCRYGG 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 611
BtsCI GGATG 2 cut(s) 268, 427
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 3 cut(s) 497, 585, 857
CfoI GCGC 2 cut(s) 510, 589
Cfr13I GGNCC 3 cut(s) 53, 334, 716
CseI GACGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 354
CviAII CATG 4 cut(s) 496, 584, 713, 856
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 344
DpnI GATC 6 cut(s) 105, 152, 210, 237, 654, 809
DpnII GATC 6 cut(s) 103, 150, 208, 235, 652, 807
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 53
Eco72I CACGTG 2 cut(s) 296, 862
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 473
EcoRII CCWGG 2 cut(s) 92, 477
EcoT22I ATGCAT 1 cut(s) 25
FaeI CATG 4 cut(s) 499, 587, 716, 859
FaqI GGGAC 2 cut(s) 197, 495
FatI CATG 4 cut(s) 495, 583, 712, 855
Fnu4HI GCNGC 2 cut(s) 663, 745
FokI GGATG 2 cut(s) 255, 434
Fsp4HI GCNGC 2 cut(s) 663, 745
FspBI CTAG 1 cut(s) 198
GlaI GCGC 2 cut(s) 509, 588
GluI GCNGC 2 cut(s) 663, 745
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 3 cut(s) 214, 336, 717
HgaI GACGC 1 cut(s) 194
HhaI GCGC 2 cut(s) 510, 589
Hin1II CATG 4 cut(s) 499, 587, 716, 859
Hin6I GCGC 2 cut(s) 508, 587
HinP1I GCGC 2 cut(s) 508, 587
HinfI GANTC 2 cut(s) 536, 547
HphI GGTGA 1 cut(s) 817
Hpy166II GTNNAC 1 cut(s) 769
Hpy188I TCNGA 1 cut(s) 780
Hpy188III TCNNGA 4 cut(s) 130, 559, 656, 726
Hpy8I GTNNAC 1 cut(s) 769
HpyAV CCTTC 5 cut(s) 66, 74, 275, 556, 723
HpyCH4III ACNGT 1 cut(s) 784
HpyCH4IV ACGT 2 cut(s) 295, 861
HpyF10VI GCNNNNNNNGC 5 cut(s) 505, 580, 593, 741, 852
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 2 cut(s) 295, 861
Hsp92II CATG 4 cut(s) 499, 587, 716, 859
HspAI GCGC 2 cut(s) 508, 587
Kzo9I GATC 6 cut(s) 103, 150, 208, 235, 652, 807
LpnPI CCDG 8 cut(s) 79, 106, 146, 289, 464, 491, 805, 820
Lsp1109I GCAGC 2 cut(s) 649, 731
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 198
MaeII ACGT 2 cut(s) 295, 861
MaeIII GTNAC 2 cut(s) 296, 520
MalI GATC 6 cut(s) 105, 152, 210, 237, 654, 809
MboI GATC 6 cut(s) 103, 150, 208, 235, 652, 807
MboII GAAGA 2 cut(s) 59, 203
MflI RGATCY 2 cut(s) 150, 652
MluCI AATT 6 cut(s) 34, 473, 489, 575, 668, 847
MmeI TCCRAC 1 cut(s) 803
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 3 cut(s) 27, 225, 488
MslI CAYNNNNRTG 3 cut(s) 36, 588, 860
MspR9I CCNGG 2 cut(s) 94, 479
MvaI CCWGG 2 cut(s) 94, 479
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 5 cut(s) 505, 580, 593, 741, 852
NdeII GATC 6 cut(s) 103, 150, 208, 235, 652, 807
NlaIII CATG 4 cut(s) 499, 587, 716, 859
NlaIV GGNNCC 3 cut(s) 54, 85, 335
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 3 cut(s) 499, 587, 859
NspV TTCGAA 1 cut(s) 539
PaeI GCATGC 3 cut(s) 499, 587, 859
PfeI GAWTC 2 cut(s) 536, 547
PkrI GCNGC 2 cut(s) 664, 746
PmaCI CACGTG 2 cut(s) 296, 862
PmlI CACGTG 2 cut(s) 296, 862
Ppu21I YACGTR 2 cut(s) 296, 862
PpuMI RGGWCCY 1 cut(s) 53
PsiI TTATAA 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 92, 477
PspCI CACGTG 2 cut(s) 296, 862
PspGI CCWGG 2 cut(s) 92, 477
PspN4I GGNNCC 3 cut(s) 54, 85, 335
PspPI GGNCC 3 cut(s) 53, 334, 716
PspPPI RGGWCCY 1 cut(s) 53
PsuI RGATCY 2 cut(s) 150, 652
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 3 cut(s) 36, 588, 860
SaqAI TTAA 3 cut(s) 27, 225, 488
SatI GCNGC 2 cut(s) 663, 745
Sau3AI GATC 6 cut(s) 103, 150, 208, 235, 652, 807
Sau96I GGNCC 3 cut(s) 53, 334, 716
ScrFI CCNGG 2 cut(s) 94, 479
SfaNI GCATC 1 cut(s) 412
SfuI TTCGAA 1 cut(s) 539
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 3 cut(s) 36, 588, 860
SmlI CTYRAG 2 cut(s) 140, 656
SmoI CTYRAG 2 cut(s) 140, 656
SphI GCATGC 3 cut(s) 499, 587, 859
Sse9I AATT 6 cut(s) 34, 473, 489, 575, 668, 847
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 92, 477
TaaI ACNGT 1 cut(s) 784
TaiI ACGT 2 cut(s) 298, 864
TaqI TCGA 4 cut(s) 303, 539, 560, 727
TasI AATT 6 cut(s) 34, 473, 489, 575, 668, 847
TfiI GAWTC 2 cut(s) 536, 547
Tru1I TTAA 3 cut(s) 27, 225, 488
Tru9I TTAA 3 cut(s) 27, 225, 488
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 2 cut(s) 662, 744
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 54, 257, 601
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 1 cut(s) 473
XceI RCATGY 3 cut(s) 499, 587, 859
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.