Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

75419205 .. 75419639

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG539800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTGGTTGGTATGTTCAGGATTGGATGTTACGCATTCTGCTTATATGTGTGTTACGGTGTTTCGGATTTCTGTTTCATATGATATTGCTGGCAATCCAGTCATCTCTGCCAATGTTGAGGCCAGTTCGGAAATAATAGATGCCGAGAGTGAGGATAAATCAGTAGTTTCCTTTGCTTCTGTCTTGTGCCATCATTTGAAAACCATGCCACAGGAAAGGGATTGGTTTTTGTACTTGAGTATAGGCAAACGACTATGCCGAGTAAATATTACAGAATTCTGCGAAAGGAGCTCTCCCAAGCCTATGTTTAAAGTTGCGCATAGCTTTCCTGAAGAAGGTCATCCAAGTCCAATTCCAAGGAGAATGACACATAACTCTCGGTTCCAAATCGTATATGGTTGGGGGCGAAAGAGTGGATCGAAGCCTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

144

Amino Acids

16.22

Weight (kDa)

8.31

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	2 cut(s)	291, 324
AluI	AGCT	2 cut(s)	291, 324
Alw21I	GWGCWC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	293
BccI	CCATC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	383
BmsI	GCATC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	98, 123
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	31, 340
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	98, 123
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	416
BspANI	GGCC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	98, 123
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	91, 426
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	31, 340
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	419
BstMBI	GATC	1 cut(s)	416
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	31, 340
Cac8I	GCNNGC	2 cut(s)	91, 426
CfoI	GCGC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	5 cut(s)	122, 291, 301, 324, 424
CviKI_1	RGCY	5 cut(s)	122, 291, 301, 324, 424
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
DraI	TTTAAA	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	1 cut(s)	208
FatI	CATG	1 cut(s)	204
FauNDI	CATATG	1 cut(s)	79
FokI	GGATG	2 cut(s)	38, 327
FriOI	GRGCYC	1 cut(s)	293
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
Hpy188I	TCNGA	2 cut(s)	66, 130
Hpy188III	TCNNGA	2 cut(s)	18, 329
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	6 cut(s)	3, 75, 111, 136, 197, 342
LweI	GCATC	1 cut(s)	130
MaeIII	GTNAC	2 cut(s)	28, 52
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	2 cut(s)	275, 351
MnlI	CCTC	2 cut(s)	112, 145
MseI	TTAA	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	1 cut(s)	416
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	2 cut(s)	169, 284
NsbI	TGCGCA	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PctI	GAATGC	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	383
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	3 cut(s)	293, 326, 340
SfaNI	GCATC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	275, 351
SspI	AATATT	1 cut(s)	268
SstI	GAGCTC	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	419
TasI	AATT	2 cut(s)	275, 351
TatI	WGTACW	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.