Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

61147550 .. 61148540

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0439900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAACTCAACTAGGCTGCAATTGTTTCTTTTCCTCCAAATGACATTGTTCTTCACAACAATGTCAATAGCCGAAGCAGCCCCAGCAAACTCGAAGCTCTTCAGGGAATACATAGGAGCCGAGGGCGTCGGTGTCACATTCTCTGATGTACCCATTGATTCCCGAGTCGAGTTTCACTTCATCCTTTCCTTTGCTATTGACTACACAACATCTTCCCGTCCTAAACCCACCAATGGCAACTTCAATGTGTTCTGGGACACAGAGAATCTCAGCCCTTCTCATGTTTCCGCCATTAAGACCCGTCATCGAAATGCTAAAGTAGCTCTGAGTCTTGGAGGAGATACCGTAGCTGGTAAACCTGCTAACTTCACTCCTACATCAATCAATTCTTGGGTCAGAAATGCTATCGCTTCGATAGTTCAGATAACGAAAGAATACAAGTTGGATGGAATCGATATAGACTATGAACACTTCAACACGGATCCCAATACGTTTGCTGAATGCATTGGGCGACTATTCTTCTACCTTAAACAAAATAAGGTTGTGTCCTTCACATCAATAGCACCATATGACGATGATTCTGTGCAACCATATTACTTGGCATTGTGGAGGAAGTACGGGAATCTCATTGACTATGTCAACTTTCAGTTCTATGCCTATGATAAGGACACATCTATTACTCAGTTCATGAAATATTTTGGGACTCAGAGCTCAAATTACAAAGGTGGCAAGGTTCTAGTGAGCTTTGGAACGGACAACAGTGGGGGTTTGTCTCCTGAAAATGGGTTCTTTGAGGCTTGTGCTAGGCTTAAAAATCAGGGCAATCTTCATGGCATTTTTATTTGGTCTGCAGACGACTCCAAGAACGCTCACTTTCGTTATGAGAAGCAATCACAAAGCCTTCTTGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

304

Amino Acids

34.28

Weight (kDa)

6.59

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	83 - 222	2.4e-13	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	2 cut(s)	476, 489
AcuI	CTGAAG	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	150, 617
AfiI	CCNNNNNNNGG	2 cut(s)	233, 782
AgsI	TTSAA	2 cut(s)	244, 475
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	5 cut(s)	97, 323, 350, 711, 744
AluI	AGCT	5 cut(s)	97, 323, 350, 711, 744
Alw21I	GWGCWC	1 cut(s)	713
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	476, 489
Ama87I	CYCGRG	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	16, 77
Asp700I	GAANNNNTTC	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	162
BamHI	GGATCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	713
Bbv12I	GWGCWC	1 cut(s)	713
BbvI	GCAGC	2 cut(s)	3, 89
BccI	CCATC	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	777
BfaI	CTAG	3 cut(s)	12, 737, 804
BfmI	CTRYAG	1 cut(s)	849
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	2 cut(s)	17, 78
BlsI	GCNGC	2 cut(s)	18, 79
BmeT110I	CYCGRG	1 cut(s)	162
BmiI	GGNNCC	2 cut(s)	118, 483
Bsa29I	ATCGAT	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 782
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	180, 451
BseLI	CCNNNNNNNGG	2 cut(s)	233, 782
BseMII	CTCAG	4 cut(s)	283, 317, 695, 719
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	3, 89
BseYI	CCCAGC	1 cut(s)	82
BshVI	ATCGAT	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	713
BsiHKCI	CYCGRG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	269, 715
BslI	CCNNNNNNNGG	2 cut(s)	233, 782
BsmAI	GTCTC	1 cut(s)	777
BsmFI	GGGAC	2 cut(s)	269, 715
BsmI	GAATGC	1 cut(s)	506
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	4 cut(s)	282, 318, 694, 718
BspDI	ATCGAT	1 cut(s)	453
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	118, 483
BspMAI	CTGCAG	1 cut(s)	853
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	2 cut(s)	476, 489
BspQI	GCTCTTC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	481
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	346, 761
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	4 cut(s)	269, 326, 681, 705
BstF5I	GGATG	2 cut(s)	180, 451
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 83, 320
BstSFI	CTRYAG	1 cut(s)	849
BstV1I	GCAGC	2 cut(s)	3, 89
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
Bsu15I	ATCGAT	1 cut(s)	453
BsuTUI	ATCGAT	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	180, 451
BtsIMutI	CAGTG	1 cut(s)	766
BveI	ACCTGC	1 cut(s)	367
CciI	TCATGA	1 cut(s)	687
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	149, 616
CviAII	CATG	3 cut(s)	281, 688, 830
CviQI	GTAC	2 cut(s)	149, 616
DdeI	CTNAG	4 cut(s)	269, 326, 681, 705
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	711
Eco24I	GRGCYC	1 cut(s)	713
Eco53kI	GAGCTC	1 cut(s)	711
Eco57I	CTGAAG	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	711
EcoT22I	ATGCAT	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	713
FaeI	CATG	3 cut(s)	284, 691, 833
FaqI	GGGAC	2 cut(s)	269, 715
FatI	CATG	3 cut(s)	280, 687, 829
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	2 cut(s)	17, 78
FokI	GGATG	2 cut(s)	167, 458
FriOI	GRGCYC	1 cut(s)	713
Fsp4HI	GCNGC	2 cut(s)	17, 78
FspBI	CTAG	3 cut(s)	12, 737, 804
GluI	GCNGC	2 cut(s)	17, 78
GsaI	CCCAGC	1 cut(s)	86
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	284, 691, 833
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	9 cut(s)	158, 165, 265, 328, 450, 578, 622, 703, 857
Hpy166II	GTNNAC	2 cut(s)	356, 640
Hpy188I	TCNGA	5 cut(s)	145, 327, 398, 423, 708
Hpy188III	TCNNGA	3 cut(s)	162, 688, 776
Hpy8I	GTNNAC	2 cut(s)	356, 640
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	285, 559, 911
HpyCH4III	ACNGT	2 cut(s)	346, 761
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	4 cut(s)	19, 504, 586, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 83, 320
HpyF3I	CTNAG	4 cut(s)	269, 326, 681, 705
HpySE526I	ACGT	1 cut(s)	491
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	284, 691, 833
Kzo9I	GATC	1 cut(s)	481
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	88, 96, 238, 336, 372, 789, 803
Lsp1109I	GCAGC	2 cut(s)	3, 89
MaeI	CTAG	3 cut(s)	12, 737, 804
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	5 cut(s)	43, 91, 204, 511, 818
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	3 cut(s)	20, 385, 715
MlyI	GAGTC	4 cut(s)	174, 337, 697, 851
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	5 cut(s)	44, 115, 329, 603, 787
Mph1103I	ATGCAT	1 cut(s)	506
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	3 cut(s)	294, 528, 810
MslI	CAYNNNNRTG	2 cut(s)	59, 309
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	506
MwoI	GCNNNNNNNGC	3 cut(s)	77, 83, 320
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	3 cut(s)	284, 691, 833
NlaIV	GGNNCC	2 cut(s)	118, 483
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	506
PagI	TCATGA	1 cut(s)	687
PciSI	GCTCTTC	1 cut(s)	104
PctI	GAATGC	1 cut(s)	506
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	5 cut(s)	158, 265, 450, 578, 622
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	18, 79
PleI	GAGTC	4 cut(s)	173, 336, 697, 851
PpsI	GAGTC	4 cut(s)	173, 336, 697, 851
Psp124BI	GAGCTC	1 cut(s)	713
PspFI	CCCAGC	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	118, 483
PstI	CTGCAG	1 cut(s)	853
PsuI	RGATCY	1 cut(s)	481
PsyI	GACNNNGTC	1 cut(s)	635
RsaI	GTAC	2 cut(s)	150, 617
RsaNI	GTAC	2 cut(s)	149, 616
RseI	CAYNNNNRTG	2 cut(s)	59, 309
SacI	GAGCTC	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	294, 528, 810
SatI	GCNGC	2 cut(s)	17, 78
Sau3AI	GATC	1 cut(s)	481
SchI	GAGTC	4 cut(s)	174, 337, 697, 851
SduI	GDGCHC	1 cut(s)	713
SfcI	CTRYAG	1 cut(s)	849
SmiMI	CAYNNNNRTG	2 cut(s)	59, 309
Sse9I	AATT	3 cut(s)	20, 385, 715
SsiI	CCGC	1 cut(s)	288
SspI	AATATT	1 cut(s)	695
SspMI	CTAG	3 cut(s)	12, 737, 804
SstI	GAGCTC	1 cut(s)	713
TaaI	ACNGT	2 cut(s)	346, 761
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	5 cut(s)	92, 168, 307, 413, 453
TasI	AATT	3 cut(s)	20, 385, 715
TfiI	GAWTC	5 cut(s)	158, 265, 450, 578, 622
Tru1I	TTAA	3 cut(s)	294, 528, 810
Tru9I	TTAA	3 cut(s)	294, 528, 810
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	16, 77
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	6 cut(s)	17, 169, 480, 676, 704, 818
TspGWI	ACGGA	2 cut(s)	494, 767
TspRI	CASTG	1 cut(s)	766
Tth111I	GACNNNGTC	1 cut(s)	635
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	3 cut(s)	12, 737, 804
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.