Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

81042328 .. 81043061

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAATCAGACTGGAACCGCCGGGAGCCTGATCAGGTGCTACATGAGATTCAGGGCCCTATTCCAAGGAACTGCCAATTTTTCTTGGGTAAATGTGATGGCGGTCTTTTGTGGTTGGTATGTTCAGGATTGGATGTTACGCATTCTGCTTATACATGTGTTACAGTGTTTCGAATTTCTGTTTCATATGATATTGCTGGCAATCCAGTCATCTCTGCCAATGTTGAGGCCAGTTCGGAAATAATAGATGCCGATAGTGAGGATAAATCAGTAGTTTCCTTTACTTCTGCCTTGTGCCATCATTTGAAAACCATGCCACAGGAAAGGGATTGGTTTTTGTACTTGAGTATAGGCAAACGACTATGCCGAGTAAATAGTACAGAATTCTGCGAAAGGAGCTCTCCCAAGCCTAAGTTTGAAGTTGCGCATAGCTTTCCTGAAGAAGGTCATCCAAGTCCAATTCCAAGGAGAATGACACATAACTCTCGGTTCCAAATCGTATATGGTTGGGGGCGAAAGAGTGGATCGAAGCCTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

180

Amino Acids

20.3

Weight (kDa)

6.65

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	426
AciI	CCGC	2 cut(s)	19, 102
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	2 cut(s)	174, 383
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	341, 379
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	307, 419
AluBI	AGCT	2 cut(s)	399, 432
AluI	AGCT	2 cut(s)	399, 432
Alw21I	GWGCWC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	532
AoxI	GGCC	2 cut(s)	55, 228
ApaI	GGGCCC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	174, 383
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	55, 56
AsuC2I	CCSGG	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	59
BanII	GRGCYC	2 cut(s)	59, 401
Bbv12I	GWGCWC	1 cut(s)	401
BccI	CCATC	2 cut(s)	92, 306
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	55, 56
BmiI	GGNNCC	4 cut(s)	17, 27, 57, 491
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	238
Bpu14I	TTCGAA	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	65, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	17, 206, 231
BseDI	CCNNGG	2 cut(s)	65, 464
BseGI	GGATG	2 cut(s)	139, 448
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	3 cut(s)	17, 206, 231
BseSI	GKGCMC	1 cut(s)	59
BshFI	GGCC	2 cut(s)	57, 230
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	57, 230
Bsp119I	TTCGAA	1 cut(s)	172
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	59, 401
Bsp143I	GATC	2 cut(s)	31, 524
BspACI	CCGC	2 cut(s)	19, 102
BspANI	GGCC	2 cut(s)	57, 230
BspLI	GGNNCC	4 cut(s)	17, 27, 57, 491
BspPI	GGATC	1 cut(s)	532
BspT104I	TTCGAA	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	17, 206, 231
BssECI	CCNNGG	2 cut(s)	65, 464
BssMI	GATC	2 cut(s)	31, 524
BssT1I	CCWWGG	2 cut(s)	65, 464
Bst4CI	ACNGT	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	199, 534
BstDEI	CTNAG	1 cut(s)	411
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	139, 448
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	34, 527
BstMBI	GATC	2 cut(s)	31, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	57, 230
BtsCI	GGATG	2 cut(s)	139, 448
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	199, 534
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	55, 56
Csp6I	GTAC	2 cut(s)	340, 378
CviAII	CATG	3 cut(s)	44, 156, 313
CviJI	RGCY	7 cut(s)	28, 57, 230, 399, 409, 432, 532
CviKI_1	RGCY	7 cut(s)	28, 57, 230, 399, 409, 432, 532
CviQI	GTAC	2 cut(s)	340, 378
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	2 cut(s)	33, 526
DpnII	GATC	2 cut(s)	31, 524
Ecl136II	GAGCTC	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	65, 464
Eco24I	GRGCYC	2 cut(s)	59, 401
Eco53kI	GAGCTC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	399
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoO109I	RGGNCCY	2 cut(s)	55, 56
EcoRI	GAATTC	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	65, 464
EcoT38I	GRGCYC	2 cut(s)	59, 401
ErhI	CCWWGG	2 cut(s)	65, 464
FaeI	CATG	3 cut(s)	47, 159, 316
FatI	CATG	3 cut(s)	43, 155, 312
FauNDI	CATATG	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	31
FokI	GGATG	2 cut(s)	146, 435
FriOI	GRGCYC	2 cut(s)	59, 401
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	57, 230
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	3 cut(s)	47, 159, 316
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	2 cut(s)	5, 49
HpaII	CCGG	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	10, 238
Hpy188III	TCNNGA	2 cut(s)	126, 437
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	47, 159, 316
HspAI	GCGC	1 cut(s)	425
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 524
LmnI	GCTCC	2 cut(s)	25, 396
LweI	GCATC	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	136, 160
MalI	GATC	2 cut(s)	33, 526
MboI	GATC	2 cut(s)	31, 524
MboII	GAAGA	1 cut(s)	452
MhlI	GDGCHC	2 cut(s)	59, 401
MluCI	AATT	4 cut(s)	77, 174, 383, 459
MnlI	CCTC	2 cut(s)	220, 253
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	2 cut(s)	31, 524
NlaIII	CATG	3 cut(s)	47, 159, 316
NlaIV	GGNNCC	4 cut(s)	17, 27, 57, 491
NmeAIII	GCCGAG	1 cut(s)	392
NsbI	TGCGCA	1 cut(s)	426
NspI	RCATGY	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PctI	GAATGC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	5, 49
PscI	ACATGT	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	401
PspN4I	GGNNCC	4 cut(s)	17, 27, 57, 491
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	55, 56
RsaI	GTAC	2 cut(s)	341, 379
RsaNI	GTAC	2 cut(s)	340, 378
SacI	GAGCTC	1 cut(s)	401
Sau3AI	GATC	2 cut(s)	31, 524
Sau96I	GGNCC	2 cut(s)	55, 56
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	59, 401
SetI	ASST	4 cut(s)	39, 401, 434, 448
SfaNI	GCATC	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	4 cut(s)	77, 174, 383, 459
SsiI	CCGC	2 cut(s)	19, 102
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	2 cut(s)	65, 464
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	172, 527
TasI	AATT	4 cut(s)	77, 174, 383, 459
TatI	WGTACW	2 cut(s)	339, 377
TfiI	GAWTC	2 cut(s)	5, 49
TscAI	CASTG	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	2 cut(s)	174, 383
XceI	RCATGY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.