Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006420.1

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

147775 .. 148890

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006420.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgctgatcaacaaggagtgcttttcaaacgtgaagaagacatgggatggactatgccgtcttaatattagcaagcaaatgtgtacctccgtctcctcaaaacagcccaacaacaaagagtggtttttgtacttgaatatgcgcaatcgagtatgccgtctaaacattagggaattctgcaaaaggaggccaaagtgtgaacttgtgcatgattattatccaggctggcctcgtaggacaattcccaccttgatgaaaccagtagttgttggttccaaagtttatatgtggggtggtatatggaaccccaatgtatattcatcgaaccccaatgtatattcctttgatccagctacgagtccacccttccgtctctgcgagggtctgatttccagattggttccacccaagattgatttcccttacattatagtgttcagccttgaggagaaaatctatgtacttgaagaagatctatcccattttagggtttttgatacggttcaccaatcctggaaagaccttcctcaccccccttatttgcctaatactgatccccgagtgtctgactactgcgtttgcagccacatactctacatcagtaccggacggaccggaccagacatttcattcatttttgacactcttgaagagaaatgggaggatgcgaagacaatccataatggtgttacagagagattcttggctttcacagaatttgagggatttttaattgccgtgacatcgtatatgaataaggtcgttgcttataagttggattcaaatggaatccccaaccttgagtcgtatcaagtgctacgtgagatatcttctataggagagatggctttcttgggtaaatgtgatggtggccgactgtggttggtgaattgtatcgaggatgactcttataaccgtatgtataatgccacacaggtaatagtgtttcaagcttccatctcaacaaaacttgatggcaatcaagctctctctgtagaaatcgaggctcgaaaatttctcgattttgaaccttccaattattgctcgtcagctttcactatgtgccatgatctggggcaagctcgatcctcactgagaaagaaaaaaaagcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

371

Amino Acids

42.91

Weight (kDa)

8.32

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	771, 912
AasI	GACNNNNNNGTC	1 cut(s)	57
Acc16I	TGCGCA	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	1072
AclWI	GGATC	3 cut(s)	341, 548, 1080
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	3 cut(s)	173, 716, 1013
AdeI	CACNNNGTG	1 cut(s)	1062
AfaI	GTAC	4 cut(s)	85, 131, 462, 604
AfiI	CCNNNNNNNGG	3 cut(s)	486, 487, 1072
AgsI	TTSAA	7 cut(s)	27, 136, 467, 650, 783, 950, 1028
AjnI	CCWGG	2 cut(s)	220, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	5 cut(s)	353, 953, 986, 1052, 1082
AluI	AGCT	5 cut(s)	353, 953, 986, 1052, 1082
Alw26I	GTCTC	2 cut(s)	97, 377
AlwI	GGATC	3 cut(s)	341, 548, 1080
Ama87I	CYCGRG	1 cut(s)	558
AoxI	GGCC	3 cut(s)	188, 227, 871
ApeKI	GCWGC	1 cut(s)	582
ApoI	RAATTY	3 cut(s)	173, 716, 1013
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	612, 617
AsuHPI	GGTGA	3 cut(s)	497, 521, 898
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	2 cut(s)	612, 617
BaeI	ACNNNNGTAYC	2 cut(s)	586, 619
BbsI	GAAGAC	2 cut(s)	44, 677
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	5 cut(s)	41, 838, 860, 965, 968
BceAI	ACGGC	3 cut(s)	42, 141, 722
BciT130I	CCWGG	2 cut(s)	222, 514
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	97, 377
BfmI	CTRYAG	2 cut(s)	834, 993
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	1 cut(s)	583
BlsI	GCNGC	1 cut(s)	584
Bme1390I	CCNGG	2 cut(s)	222, 514
Bme18I	GGWCC	2 cut(s)	612, 617
BmeT110I	CYCGRG	1 cut(s)	558
BmgT120I	GGNCC	2 cut(s)	612, 617
BmiI	GGNNCC	3 cut(s)	274, 305, 402
BmrFI	CCNGG	2 cut(s)	222, 514
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	2 cut(s)	44, 677
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
BpuEI	CTTGAG	2 cut(s)	464, 821
BsaAI	YACGTR	1 cut(s)	821
BsaBI	GATNNNNATC	2 cut(s)	216, 978
BsaWI	WCCGGW	2 cut(s)	605, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	486, 487, 1072
Bse1I	ACTGG	1 cut(s)	260
Bse8I	GATNNNNATC	2 cut(s)	216, 978
BseBI	CCWGG	2 cut(s)	222, 514
BseGI	GGATG	3 cut(s)	52, 670, 907
BseJI	GATNNNNATC	2 cut(s)	216, 978
BseLI	CCNNNNNNNGG	3 cut(s)	486, 487, 1072
BseMII	CTCAG	1 cut(s)	1085
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	85, 461
BseXI	GCAGC	1 cut(s)	594
BshFI	GGCC	3 cut(s)	190, 229, 873
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	2 cut(s)	606, 615
BslI	CCNNNNNNNGG	3 cut(s)	486, 487, 1072
BsmAI	GTCTC	2 cut(s)	97, 377
BsmBI	CGTCTC	2 cut(s)	97, 377
BsnI	GGCC	3 cut(s)	190, 229, 873
BsoBI	CYCGRG	1 cut(s)	558
Bsp143I	GATC	6 cut(s)	6, 346, 472, 553, 1069, 1085
BspANI	GGCC	3 cut(s)	190, 229, 873
BspCNI	CTCAG	1 cut(s)	1086
BspLI	GGNNCC	3 cut(s)	274, 305, 402
BspPI	GGATC	3 cut(s)	341, 548, 1080
BsrI	ACTGG	1 cut(s)	260
BssMI	GATC	6 cut(s)	6, 346, 472, 553, 1069, 1085
Bst2UI	CCWGG	2 cut(s)	222, 514
Bst4CI	ACNGT	3 cut(s)	502, 879, 917
Bst6I	CTCTTC	1 cut(s)	645
BstBAI	YACGTR	1 cut(s)	821
BstC8I	GCNNGC	3 cut(s)	74, 227, 1080
BstDEI	CTNAG	1 cut(s)	1094
BstF5I	GGATG	3 cut(s)	52, 670, 907
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	6 cut(s)	9, 349, 475, 556, 1072, 1088
BstMAI	GTCTC	2 cut(s)	97, 377
BstMBI	GATC	6 cut(s)	6, 346, 472, 553, 1069, 1085
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstNI	CCWGG	2 cut(s)	222, 514
BstSCI	CCNGG	2 cut(s)	220, 512
BstSFI	CTRYAG	2 cut(s)	834, 993
BstV1I	GCAGC	1 cut(s)	594
BstV2I	GAAGAC	2 cut(s)	44, 677
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	3 cut(s)	190, 229, 873
BtsCI	GGATG	3 cut(s)	52, 670, 907
BtsIMutI	CAGTG	1 cut(s)	1091
Cac8I	GCNNGC	3 cut(s)	74, 227, 1080
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	612, 617
CpoI	CGGWCCG	1 cut(s)	612
Csp6I	GTAC	4 cut(s)	84, 130, 461, 603
CspI	CGGWCCG	1 cut(s)	612
CviAII	CATG	3 cut(s)	42, 209, 1067
CviQI	GTAC	4 cut(s)	84, 130, 461, 603
DdeI	CTNAG	1 cut(s)	1094
DpnI	GATC	6 cut(s)	8, 348, 474, 555, 1071, 1087
DpnII	GATC	6 cut(s)	6, 346, 472, 553, 1069, 1085
DraIII	CACNNNGTG	1 cut(s)	1062
DrdI	GACNNNNNNGTC	1 cut(s)	57
DseDI	GACNNNNNNGTC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco32I	GATATC	1 cut(s)	828
Eco47I	GGWCC	2 cut(s)	612, 617
Eco88I	CYCGRG	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	220, 512
EcoRV	GATATC	1 cut(s)	828
Esp3I	CGTCTC	2 cut(s)	97, 377
FaeI	CATG	3 cut(s)	45, 212, 1070
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	3 cut(s)	41, 208, 1066
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	583
FokI	GGATG	3 cut(s)	59, 677, 914
Fsp4HI	GCNGC	1 cut(s)	583
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	583
HaeIII	GGCC	3 cut(s)	190, 229, 873
HapII	CCGG	2 cut(s)	606, 615
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	45, 212, 1070
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	951
HinfI	GANTC	6 cut(s)	358, 699, 779, 789, 803, 905
HpaII	CCGG	2 cut(s)	606, 615
HphI	GGTGA	3 cut(s)	497, 521, 898
Hpy166II	GTNNAC	4 cut(s)	84, 200, 362, 505
Hpy188I	TCNGA	2 cut(s)	387, 568
Hpy188III	TCNNGA	3 cut(s)	393, 647, 1019
Hpy8I	GTNNAC	4 cut(s)	84, 200, 362, 505
HpyAV	CCTTC	3 cut(s)	376, 533, 1041
HpyCH4III	ACNGT	3 cut(s)	502, 879, 917
HpyCH4IV	ACGT	2 cut(s)	30, 820
HpyCH4V	TGCA	3 cut(s)	180, 208, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpyF3I	CTNAG	1 cut(s)	1094
HpySE526I	ACGT	2 cut(s)	30, 820
Hsp92II	CATG	3 cut(s)	45, 212, 1070
HspAI	GCGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	6, 346, 472, 553, 1069, 1085
Lsp1109I	GCAGC	1 cut(s)	594
LweI	GCATC	1 cut(s)	655
MaeII	ACGT	2 cut(s)	30, 820
MaeIII	GTNAC	2 cut(s)	688, 739
MalI	GATC	6 cut(s)	8, 348, 474, 555, 1071, 1087
MboI	GATC	6 cut(s)	6, 346, 472, 553, 1069, 1085
MboII	GAAGA	7 cut(s)	46, 49, 479, 482, 662, 682, 822
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	7 cut(s)	173, 240, 716, 732, 889, 1013, 1036
MlyI	GAGTC	3 cut(s)	367, 812, 899
MmeI	TCCRAC	1 cut(s)	756
MseI	TTAA	2 cut(s)	63, 731
MslI	CAYNNNNRTG	3 cut(s)	251, 431, 684
MspI	CCGG	2 cut(s)	606, 615
MspR9I	CCNGG	2 cut(s)	222, 514
MvaI	CCWGG	2 cut(s)	222, 514
MwoI	GCNNNNNNNGC	1 cut(s)	582
NdeII	GATC	6 cut(s)	6, 346, 472, 553, 1069, 1085
NlaIII	CATG	3 cut(s)	45, 212, 1070
NlaIV	GGNNCC	3 cut(s)	274, 305, 402
NmuCI	GTSAC	1 cut(s)	739
NsbI	TGCGCA	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	699, 779, 789
PflMI	CCANNNNNTGG	1 cut(s)	1072
PfoI	TCCNGGA	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	584
PleI	GAGTC	3 cut(s)	366, 811, 899
PpsI	GAGTC	3 cut(s)	366, 811, 899
Ppu21I	YACGTR	1 cut(s)	821
PsiI	TTATAA	2 cut(s)	771, 912
Psp6I	CCWGG	2 cut(s)	220, 512
PspGI	CCWGG	2 cut(s)	220, 512
PspN4I	GGNNCC	3 cut(s)	274, 305, 402
PspPI	GGNCC	2 cut(s)	612, 617
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	4 cut(s)	85, 131, 462, 604
RsaNI	GTAC	4 cut(s)	84, 130, 461, 603
RseI	CAYNNNNRTG	3 cut(s)	251, 431, 684
Rsr2I	CGGWCCG	1 cut(s)	612
RsrII	CGGWCCG	1 cut(s)	612
SaqAI	TTAA	2 cut(s)	63, 731
SatI	GCNGC	1 cut(s)	583
Sau3AI	GATC	6 cut(s)	6, 346, 472, 553, 1069, 1085
Sau96I	GGNCC	2 cut(s)	612, 617
SchI	GAGTC	3 cut(s)	367, 812, 899
ScrFI	CCNGG	2 cut(s)	222, 514
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	834, 993
SinI	GGWCC	2 cut(s)	612, 617
SmiMI	CAYNNNNRTG	3 cut(s)	251, 431, 684
SmlI	CTYRAG	2 cut(s)	443, 800
SmoI	CTYRAG	2 cut(s)	443, 800
Sse9I	AATT	7 cut(s)	173, 240, 716, 732, 889, 1013, 1036
SspI	AATATT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	220, 512
TaaI	ACNGT	3 cut(s)	502, 879, 917
TaiI	ACGT	2 cut(s)	33, 823
TaqI	TCGA	7 cut(s)	148, 323, 897, 1002, 1009, 1020, 1084
TasI	AATT	7 cut(s)	173, 240, 716, 732, 889, 1013, 1036
TatI	WGTACW	2 cut(s)	129, 460
TfiI	GAWTC	3 cut(s)	699, 779, 789
Tru1I	TTAA	2 cut(s)	63, 731
Tru9I	TTAA	2 cut(s)	63, 731
TscAI	CASTG	1 cut(s)	1098
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	1 cut(s)	582
Tsp45I	GTSAC	1 cut(s)	739
TspDTI	ATGAA	5 cut(s)	269, 309, 618, 622, 767
TspGWI	ACGGA	3 cut(s)	79, 359, 625
TspRI	CASTG	1 cut(s)	1098
Van91I	CCANNNNNTGG	1 cut(s)	1072
VpaK11BI	GGWCC	2 cut(s)	612, 617
XapI	RAATTY	3 cut(s)	173, 716, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.