RLG00000008241

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
27617265 .. 27618350
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008241

Sequence Viewer

Length: 1086 bp
ATGTCGATGAAGAAGGATATGTTTTTGTACTTGAATATGGACGACCGACTTTTGAGTCTAAATCTTAGAGAGGTCAGAGAAAGATACTCTTCCAAGCCTGAGTTTGAAGTTGTTCAGGTTTTGAATTATCCGAACGGCCGTATTCCAGGTACAAATTCCGATATCGCAAAGACAGATTGTATGACTGTGTGTAATTCCAACTTGTATATGATGACGGTAACTGAAAATCACCGCGGGTCTGGTAATTTTGAGTTGGATGTTTATTCCTTTGATCCCACTGGGGCAGATGACTGTAAATCCATCCGTCTATGTGACAGAAGTGCCACACCTAGATTGATGTATAGTAATCGTCCTATAGTGTTCACCCTCGATGAGAAAATCTATGTTCTGGGAGCACCATCATCTTCATACAGCGGACATGGTGATGATGTGGAGGAAGAGCCACAACTTTTTTGGGTTTTTGATCCTTTTCACGAATCCTGGAAGCCACTCCCTCATCCTCTCTTCTACAATCATGATACATATTTTGTATATTATGATGTTTCTTATGGTCACAAGCTTTTTATTCGTTCATCCGATCAAAGACACGTTTTTGACGCTGACCAAGAGAGATGGGAGGGTTCAGAAAACCACGGTTATGCTCAGCATTTCTTTGAATTTAATGCTATTGTAGAAGTTGGTGAAGGCTTTTTAATTGCTGTGCCTAAGAGGACGAGCAATGAACAGAAGAGCCATGAGCTTGTTGCTTATAAGCTGGATGTTAACGGGATCCCTCAGCCGCATCAGGTGCTACACGAGCTTACCGGGATGTTTTCATGGCGTCCTTTGTTAAGTAACCCTCAAGTTTTTTTGGGTAAATGTGATGATAACCTTATGTGGTTGGTGTATTGTGGCAAGGATAATGTCCAGAAATTTTCTTGTATAGGCGTCGCAGTGTTTCGAGTTTCTATGTCATATGACCATGCTGGCAATGTAGTGTTTTTGGTAGATATTGAGGCTGCGGATTTTATCGATTCAAATAGTTATGACGTTCAAGGCGCCGAGGAGACCACTCTAGTTTACTCAGCTTCTGGCCATGTGCCATGA

Protein Analysis

362

Amino Acids

41.39

Weight (kDa)

4.98

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 97 - 211 4.7e-09 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
AasI GACNNNNNNGTC 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 1037
AccII CGCG 1 cut(s) 234
AciI CCGC 5 cut(s) 232, 234, 414, 779, 1001
AclWI GGATC 4 cut(s) 266, 458, 763, 776
AcoI YGGCCR 2 cut(s) 136, 1072
AcsI RAATTY 3 cut(s) 154, 656, 911
AcyI GRCGYC 3 cut(s) 820, 927, 1038
AfaI GTAC 2 cut(s) 29, 151
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 6 cut(s) 34, 107, 124, 656, 1017, 1034
AjnI CCWGG 2 cut(s) 145, 479
AluBI AGCT 5 cut(s) 559, 739, 754, 799, 1067
AluI AGCT 5 cut(s) 559, 739, 754, 799, 1067
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 1040
AlwI GGATC 4 cut(s) 266, 458, 763, 776
AlwNI CAGNNNCTG 1 cut(s) 1070
AoxI GGCC 2 cut(s) 136, 1072
ApeKI GCWGC 1 cut(s) 998
ApoI RAATTY 3 cut(s) 154, 656, 911
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 1040
AsuC2I CCSGG 1 cut(s) 805
AsuHPI GGTGA 4 cut(s) 221, 355, 434, 692
BalI TGGCCA 1 cut(s) 1074
BamHI GGATCC 1 cut(s) 768
BanI GGYRCC 1 cut(s) 1037
BauI CACGAG 1 cut(s) 794
Bbv12I GWGCWC 1 cut(s) 397
BbvCI CCTCAGC 1 cut(s) 774
BbvI GCAGC 1 cut(s) 985
BccI CCATC 3 cut(s) 308, 406, 606
BceAI ACGGC 2 cut(s) 123, 151
BciT130I CCWGG 2 cut(s) 147, 481
BcnI CCSGG 1 cut(s) 805
BcoDI GTCTC 1 cut(s) 1040
BfaI CTAG 2 cut(s) 330, 1055
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 1041
BisI GCNGC 2 cut(s) 779, 999
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 2 cut(s) 780, 1000
Bme1390I CCNGG 3 cut(s) 147, 481, 805
BmiI GGNNCC 2 cut(s) 770, 1039
BmrFI CCNGG 3 cut(s) 147, 481, 805
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 790
BmuI ACTGGG 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 774
Bpu1102I GCTNAGC 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 825
BpuMI CCSGG 1 cut(s) 805
Bsa29I ATCGAT 1 cut(s) 1011
BsaHI GRCGYC 3 cut(s) 820, 927, 1038
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 3 cut(s) 232, 631, 1041
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 2 cut(s) 724, 976
BseBI CCWGG 2 cut(s) 147, 481
BseCI ATCGAT 1 cut(s) 1011
BseDI CCNNGG 3 cut(s) 232, 631, 1041
BseGI GGATG 6 cut(s) 262, 300, 496, 572, 763, 813
BseMI GCAATG 2 cut(s) 724, 976
BseMII CTCAG 4 cut(s) 90, 656, 788, 1077
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 1058
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 985
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 2 cut(s) 46, 139
BshFI GGCC 2 cut(s) 138, 1074
BshNI GGYRCC 1 cut(s) 1037
BshVI ATCGAT 1 cut(s) 1011
BsiEI CGRYCG 2 cut(s) 46, 139
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 1 cut(s) 804
BsmAI GTCTC 1 cut(s) 1040
BsnI GGCC 2 cut(s) 138, 1074
Bso31I GGTCTC 1 cut(s) 1040
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 4 cut(s) 271, 463, 577, 768
Bsp1720I GCTNAGC 1 cut(s) 642
BspACI CCGC 5 cut(s) 232, 234, 414, 779, 1001
BspANI GGCC 2 cut(s) 138, 1074
BspCNI CTCAG 4 cut(s) 91, 655, 787, 1076
BspDI ATCGAT 1 cut(s) 1011
BspFNI CGCG 1 cut(s) 234
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 2 cut(s) 770, 1039
BspPI GGATC 4 cut(s) 266, 458, 763, 776
BspQI GCTCTTC 2 cut(s) 432, 722
BspT107I GGYRCC 1 cut(s) 1037
BspTNI GGTCTC 1 cut(s) 1040
BsrDI GCAATG 2 cut(s) 724, 976
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 3 cut(s) 232, 631, 1041
BssMI GATC 4 cut(s) 271, 463, 577, 768
BssNI GRCGYC 3 cut(s) 820, 927, 1038
BssSI CACGAG 1 cut(s) 794
Bst2BI CACGAG 1 cut(s) 794
Bst2UI CCWGG 2 cut(s) 147, 481
Bst4CI ACNGT 4 cut(s) 187, 217, 293, 635
Bst6I CTCTTC 4 cut(s) 94, 432, 509, 722
BstACI GRCGYC 3 cut(s) 820, 927, 1038
BstAPI GCANNNNNTGC 1 cut(s) 787
BstC8I GCNNGC 1 cut(s) 967
BstDEI CTNAG 6 cut(s) 65, 99, 642, 705, 774, 1063
BstDSI CCRYGG 2 cut(s) 232, 631
BstF5I GGATG 6 cut(s) 262, 300, 496, 572, 763, 813
BstFNI CGCG 1 cut(s) 234
BstH2I RGCGCY 1 cut(s) 1041
BstHHI GCGC 1 cut(s) 1040
BstKTI GATC 4 cut(s) 274, 466, 580, 771
BstMAI GTCTC 1 cut(s) 1040
BstMBI GATC 4 cut(s) 271, 463, 577, 768
BstMCI CGRYCG 2 cut(s) 46, 139
BstMWI GCNNNNNNNGC 2 cut(s) 787, 796
BstNI CCWGG 2 cut(s) 147, 481
BstSCI CCNGG 3 cut(s) 145, 479, 803
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 985
BstX2I RGATCY 1 cut(s) 768
BstYI RGATCY 1 cut(s) 768
BstZI CGGCCG 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 1011
BsuRI GGCC 2 cut(s) 138, 1074
BsuTUI ATCGAT 1 cut(s) 1011
BtgI CCRYGG 2 cut(s) 232, 631
BtsCI GGATG 6 cut(s) 262, 300, 496, 572, 763, 813
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 2 cut(s) 276, 939
Cac8I GCNNGC 1 cut(s) 967
CaiI CAGNNNCTG 1 cut(s) 1070
CciI TCATGA 1 cut(s) 514
CfoI GCGC 1 cut(s) 1040
Cfr42I CCGCGG 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 1011
CseI GACGC 3 cut(s) 605, 809, 916
Csp6I GTAC 2 cut(s) 28, 150
CviAII CATG 7 cut(s) 419, 515, 734, 816, 962, 1076, 1083
CviQI GTAC 2 cut(s) 28, 150
DdeI CTNAG 6 cut(s) 65, 99, 642, 705, 774, 1063
DinI GGCGCC 1 cut(s) 1039
DpnI GATC 4 cut(s) 273, 465, 579, 770
DpnII GATC 4 cut(s) 271, 463, 577, 768
DrdI GACNNNNNNGTC 1 cut(s) 54
DseDI GACNNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 2 cut(s) 136, 1072
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 4 cut(s) 94, 432, 509, 722
EarI CTCTTC 4 cut(s) 94, 432, 509, 722
EclXI CGGCCG 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 1040
Eco32I GATATC 1 cut(s) 163
Eco52I CGGCCG 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 145, 479
EcoRV GATATC 1 cut(s) 163
EgeI GGCGCC 1 cut(s) 1039
EheI GGCGCC 1 cut(s) 1039
FaeI CATG 7 cut(s) 422, 518, 737, 819, 965, 1079, 1086
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FatI CATG 7 cut(s) 418, 514, 733, 815, 961, 1075, 1082
FauI CCCGC 1 cut(s) 227
FauNDI CATATG 1 cut(s) 955
Fnu4HI GCNGC 2 cut(s) 779, 999
FokI GGATG 6 cut(s) 269, 287, 483, 559, 770, 820
Fsp4HI GCNGC 2 cut(s) 779, 999
FspBI CTAG 2 cut(s) 330, 1055
GlaI GCGC 1 cut(s) 1039
GluI GCNGC 2 cut(s) 779, 999
HaeII RGCGCY 1 cut(s) 1041
HaeIII GGCC 2 cut(s) 138, 1074
HapII CCGG 1 cut(s) 804
HgaI GACGC 3 cut(s) 605, 809, 916
HhaI GCGC 1 cut(s) 1040
Hin1I GRCGYC 3 cut(s) 820, 927, 1038
Hin1II CATG 7 cut(s) 422, 518, 737, 819, 965, 1079, 1086
Hin6I GCGC 1 cut(s) 1038
HinP1I GCGC 1 cut(s) 1038
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 557
HinfI GANTC 3 cut(s) 55, 476, 1013
HpaI GTTAAC 1 cut(s) 763
HpaII CCGG 1 cut(s) 804
HphI GGTGA 4 cut(s) 221, 355, 434, 692
Hpy166II GTNNAC 3 cut(s) 363, 763, 1060
Hpy188I TCNGA 5 cut(s) 77, 132, 160, 577, 625
Hpy188III TCNNGA 3 cut(s) 473, 515, 907
Hpy8I GTNNAC 3 cut(s) 363, 763, 1060
Hpy99I CGWCG 1 cut(s) 932
HpyAV CCTTC 2 cut(s) 7, 677
HpyCH4III ACNGT 4 cut(s) 187, 217, 293, 635
HpyCH4IV ACGT 2 cut(s) 588, 1029
HpyF10VI GCNNNNNNNGC 2 cut(s) 787, 796
HpyF3I CTNAG 6 cut(s) 65, 99, 642, 705, 774, 1063
HpySE526I ACGT 2 cut(s) 588, 1029
Hsp92I GRCGYC 3 cut(s) 820, 927, 1038
Hsp92II CATG 7 cut(s) 422, 518, 737, 819, 965, 1079, 1086
HspAI GCGC 1 cut(s) 1038
KasI GGCGCC 1 cut(s) 1037
KspAI GTTAAC 1 cut(s) 763
KspI CCGCGG 1 cut(s) 235
Kzo9I GATC 4 cut(s) 271, 463, 577, 768
LguI GCTCTTC 2 cut(s) 432, 722
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 1 cut(s) 985
LweI GCATC 1 cut(s) 790
MaeI CTAG 2 cut(s) 330, 1055
MaeII ACGT 2 cut(s) 588, 1029
MaeIII GTNAC 4 cut(s) 217, 311, 551, 833
MalI GATC 4 cut(s) 273, 465, 579, 770
MboI GATC 4 cut(s) 271, 463, 577, 768
MboII GAAGA 6 cut(s) 22, 81, 396, 449, 496, 739
MflI RGATCY 1 cut(s) 768
MhlI GDGCHC 1 cut(s) 397
MlsI TGGCCA 1 cut(s) 1074
MluCI AATT 7 cut(s) 124, 154, 193, 244, 656, 693, 911
MluNI TGGCCA 1 cut(s) 1074
Mly113I GGCGCC 1 cut(s) 1038
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 2 cut(s) 222, 234
Mox20I TGGCCA 1 cut(s) 1074
MroXI GAANNNNTTC 1 cut(s) 111
MscI TGGCCA 1 cut(s) 1074
MseI TTAA 4 cut(s) 660, 692, 762, 830
MslI CAYNNNNRTG 2 cut(s) 423, 636
Msp20I TGGCCA 1 cut(s) 1074
MspA1I CMGCKG 2 cut(s) 234, 414
MspI CCGG 1 cut(s) 804
MspR9I CCNGG 3 cut(s) 147, 481, 805
MvaI CCWGG 2 cut(s) 147, 481
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 787, 796
NarI GGCGCC 1 cut(s) 1038
NciI CCSGG 1 cut(s) 805
NdeI CATATG 1 cut(s) 955
NdeII GATC 4 cut(s) 271, 463, 577, 768
NlaIII CATG 7 cut(s) 422, 518, 737, 819, 965, 1079, 1086
NlaIV GGNNCC 2 cut(s) 770, 1039
NmeAIII GCCGAG 1 cut(s) 1066
NmuCI GTSAC 2 cut(s) 311, 551
PagI TCATGA 1 cut(s) 514
PciSI GCTCTTC 2 cut(s) 432, 722
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 476, 1013
PfoI TCCNGGA 1 cut(s) 479
PkrI GCNGC 2 cut(s) 780, 1000
PleI GAGTC 1 cut(s) 63
PluTI GGCGCC 1 cut(s) 1041
PpsI GAGTC 1 cut(s) 63
PsiI TTATAA 1 cut(s) 750
Psp6I CCWGG 2 cut(s) 145, 479
PspGI CCWGG 2 cut(s) 145, 479
PspN4I GGNNCC 2 cut(s) 770, 1039
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 1 cut(s) 768
RsaI GTAC 2 cut(s) 29, 151
RsaNI GTAC 2 cut(s) 28, 150
RseI CAYNNNNRTG 2 cut(s) 423, 636
SacII CCGCGG 1 cut(s) 235
SapI GCTCTTC 2 cut(s) 432, 722
SaqAI TTAA 4 cut(s) 660, 692, 762, 830
SatI GCNGC 2 cut(s) 779, 999
Sau3AI GATC 4 cut(s) 271, 463, 577, 768
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 3 cut(s) 147, 481, 805
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 790
SfcI CTRYAG 1 cut(s) 354
SfoI GGCGCC 1 cut(s) 1039
Sfr303I CCGCGG 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 423, 636
SmlI CTYRAG 1 cut(s) 840
SmoI CTYRAG 1 cut(s) 840
Sse9I AATT 7 cut(s) 124, 154, 193, 244, 656, 693, 911
SsiI CCGC 5 cut(s) 232, 234, 414, 779, 1001
SspDI GGCGCC 1 cut(s) 1037
SspMI CTAG 2 cut(s) 330, 1055
StyD4I CCNGG 3 cut(s) 145, 479, 803
TaaI ACNGT 4 cut(s) 187, 217, 293, 635
TaiI ACGT 2 cut(s) 591, 1032
TaqI TCGA 4 cut(s) 5, 369, 940, 1011
TaqII GACCGA 1 cut(s) 60
TasI AATT 7 cut(s) 124, 154, 193, 244, 656, 693, 911
TatI WGTACW 1 cut(s) 27
TauI GCSGC 1 cut(s) 781
TfiI GAWTC 2 cut(s) 476, 1013
Tru1I TTAA 4 cut(s) 660, 692, 762, 830
Tru9I TTAA 4 cut(s) 660, 692, 762, 830
TscAI CASTG 2 cut(s) 283, 939
TseFI GTSAC 2 cut(s) 311, 551
TseI GCWGC 1 cut(s) 998
Tsp45I GTSAC 2 cut(s) 311, 551
TspDTI ATGAA 5 cut(s) 23, 396, 561, 735, 804
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 2 cut(s) 283, 939
XapI RAATTY 3 cut(s) 154, 656, 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 2 cut(s) 330, 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.