Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

36776652 .. 36777899

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCCGATGCAAGCACCACCGCCAAAAAAGGATTGGTTTTTGTACTTGATCATGGACGATCGAATATGCCGTCTAAATATTGATGAATTCTGCAAAAGGAACTCTCCAAAGCCTCAGTTTGAAGTTGTGCATGATTATTATCCTAATGGCGACTATCGTCTTGATACAACTATTCCGCAGGGAATGCAACCTATAGTTGTGGGTTCCAAAATTGTAACTTGCAATACTCGGTCGGGTTTATACCTTTTTGACGTTCATCAAGAGAAATGGGAACAATGGCCAGAGCAAAAGGAGGACGAAGGGAACAACCACTTTGAGTTTATGGCTGTTGTAGAATTTGAGGGCTTTTTAATTGGTGTAATATACCATGAGCTCACTGTTTATCAGTTGGATCCGAATGGTATCCCCAAGCTGTTTCGAGACCTAGATGAGCTTCAGGGGATATTCTGTCCTTTTTTACTCGTCGGTAACTGTGTTATGGGTAAGTGTGATGGTGGCCGAATTTGGTTGGTGTATACCGGCAAGGATGTTTTGGCACGTTGGCATACACGTGTAGCTGTGTTTCAAGTTTCCATCTCCGACGATAGTGATGGCAATCCGGTCCTCTCCACTGAACTCGAGGCTGCGGAGTTTTATTTATTCCGAAATAGTTATGATAAAATTTCCTCAGCTTTTTCCATGTGCCATCATTCAAACAATCGTGATATTGAGGAGAAAAAAATATGTGGGACAATTCTAACACATGATCGTCCTCGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

253

Amino Acids

29.31

Weight (kDa)

5.18

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	753
AccI	GTMKAC	1 cut(s)	515
AciI	CCGC	3 cut(s)	20, 176, 626
AclWI	GGATC	2 cut(s)	386, 399
AcoI	YGGCCR	2 cut(s)	278, 496
AcsI	RAATTY	4 cut(s)	86, 335, 501, 660
AcuI	CTGAAG	1 cut(s)	419
AcvI	CACGTG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	44
AflIII	ACRYGT	2 cut(s)	548, 550
AgsI	TTSAA	3 cut(s)	122, 566, 693
AluBI	AGCT	5 cut(s)	373, 412, 433, 557, 671
AluI	AGCT	5 cut(s)	373, 412, 433, 557, 671
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	2 cut(s)	386, 399
Ama87I	CYCGRG	2 cut(s)	617, 753
AoxI	GGCC	2 cut(s)	278, 496
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	4 cut(s)	86, 335, 501, 660
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspS9I	GGNCC	1 cut(s)	601
AvaI	CYCGRG	2 cut(s)	617, 753
AvaII	GGWCC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	375
BbrPI	CACGTG	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	667
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	4 cut(s)	485, 581, 584, 693
BceAI	ACGGC	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	413
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
Bme18I	GGWCC	1 cut(s)	601
BmeT110I	CYCGRG	2 cut(s)	617, 753
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	2 cut(s)	205, 393
BoxI	GACNNNNGTC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	667
BsaAI	YACGTR	1 cut(s)	551
BsaBI	GATNNNNATC	2 cut(s)	138, 594
BsaI	GGTCTC	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	518
Bse8I	GATNNNNATC	2 cut(s)	138, 594
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	2 cut(s)	138, 594
BseMII	CTCAG	2 cut(s)	128, 681
BseRI	GAGGAG	1 cut(s)	725
BseXI	GCAGC	1 cut(s)	610
Bsh1285I	CGRYCG	2 cut(s)	61, 233
BshFI	GGCC	2 cut(s)	280, 498
BsiEI	CGRYCG	2 cut(s)	61, 233
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	2 cut(s)	617, 753
BsiSI	CCGG	2 cut(s)	519, 599
BslFI	GGGAC	1 cut(s)	742
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	742
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	280, 498
Bso31I	GGTCTC	1 cut(s)	414
BsoBI	CYCGRG	2 cut(s)	617, 753
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	48, 58, 391, 745
BspACI	CCGC	3 cut(s)	20, 176, 626
BspANI	GGCC	2 cut(s)	280, 498
BspCNI	CTCAG	2 cut(s)	127, 680
BspLI	GGNNCC	2 cut(s)	205, 393
BspPI	GGATC	2 cut(s)	386, 399
BspTNI	GGTCTC	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	518
BssMI	GATC	4 cut(s)	48, 58, 391, 745
BssNAI	GTATAC	1 cut(s)	516
Bst1107I	GTATAC	1 cut(s)	516
Bst4CI	ACNGT	2 cut(s)	379, 473
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	114, 667
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	4 cut(s)	51, 61, 394, 748
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	4 cut(s)	48, 58, 391, 745
BstMCI	CGRYCG	2 cut(s)	61, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	610
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BstZ17I	GTATAC	1 cut(s)	516
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	280, 498
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	375, 609
Cac8I	GCNNGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	601
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	5 cut(s)	52, 131, 368, 679, 743
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	114, 667
DpnI	GATC	4 cut(s)	50, 60, 393, 747
DpnII	GATC	4 cut(s)	48, 58, 391, 745
EaeI	YGGCCR	2 cut(s)	278, 496
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	419
Eco72I	CACGTG	1 cut(s)	551
Eco88I	CYCGRG	2 cut(s)	617, 753
EcoICRI	GAGCTC	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	5 cut(s)	55, 134, 371, 682, 746
FaqI	GGGAC	1 cut(s)	742
FatI	CATG	5 cut(s)	51, 130, 367, 678, 742
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	280, 498
HapII	CCGG	2 cut(s)	519, 599
Hin1II	CATG	5 cut(s)	55, 134, 371, 682, 746
HpaII	CCGG	2 cut(s)	519, 599
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	3 cut(s)	396, 580, 644
Hpy188III	TCNNGA	4 cut(s)	161, 260, 419, 701
Hpy8I	GTNNAC	1 cut(s)	516
Hpy99I	CGWCG	2 cut(s)	467, 584
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	379, 473
HpyCH4IV	ACGT	3 cut(s)	252, 538, 550
HpyCH4V	TGCA	5 cut(s)	10, 93, 130, 187, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	2 cut(s)	114, 667
HpySE526I	ACGT	3 cut(s)	252, 538, 550
Hsp92II	CATG	5 cut(s)	55, 134, 371, 682, 746
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	48, 58, 391, 745
LpnPI	CCDG	5 cut(s)	164, 294, 422, 532, 612
Lsp1109I	GCAGC	1 cut(s)	610
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	3 cut(s)	252, 538, 550
MaeIII	GTNAC	2 cut(s)	214, 467
MalI	GATC	4 cut(s)	50, 60, 393, 747
MboI	GATC	4 cut(s)	48, 58, 391, 745
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	280
MluCI	AATT	7 cut(s)	86, 210, 335, 351, 501, 660, 732
MluNI	TGGCCA	1 cut(s)	280
MmeI	TCCRAC	2 cut(s)	369, 603
MnlI	CCTC	9 cut(s)	123, 286, 334, 613, 614, 676, 703, 749, 762
Mox20I	TGGCCA	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	280
MspI	CCGG	2 cut(s)	519, 599
Mva1269I	GAATGC	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	4 cut(s)	48, 58, 391, 745
NlaIII	CATG	5 cut(s)	55, 134, 371, 682, 746
NlaIV	GGNNCC	2 cut(s)	205, 393
PaeR7I	CTCGAG	2 cut(s)	617, 753
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PctI	GAATGC	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	625
Ple19I	CGATCG	1 cut(s)	61
PmaCI	CACGTG	1 cut(s)	551
PmlI	CACGTG	1 cut(s)	551
Ppu21I	YACGTR	1 cut(s)	551
PshAI	GACNNNNGTC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	375
PspCI	CACGTG	1 cut(s)	551
PspN4I	GGNNCC	2 cut(s)	205, 393
PspPI	GGNCC	1 cut(s)	601
PspXI	VCTCGAGB	2 cut(s)	617, 753
PsuI	RGATCY	1 cut(s)	391
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	4 cut(s)	48, 58, 391, 745
Sau96I	GGNCC	1 cut(s)	601
SduI	GDGCHC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	2 cut(s)	617, 753
SinI	GGWCC	1 cut(s)	601
SlaI	CTCGAG	2 cut(s)	617, 753
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	2 cut(s)	617, 753
SmoI	CTYRAG	2 cut(s)	617, 753
Sse9I	AATT	7 cut(s)	86, 210, 335, 351, 501, 660, 732
SsiI	CCGC	3 cut(s)	20, 176, 626
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	379, 473
TaiI	ACGT	3 cut(s)	255, 541, 553
TaqI	TCGA	4 cut(s)	61, 418, 618, 754
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	7 cut(s)	86, 210, 335, 351, 501, 660, 732
TatI	WGTACW	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	2 cut(s)	382, 616
TseI	GCWGC	1 cut(s)	623
TspDTI	ATGAA	2 cut(s)	99, 245
TspRI	CASTG	2 cut(s)	382, 616
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	4 cut(s)	86, 335, 501, 660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XhoI	CTCGAG	2 cut(s)	617, 753
XmiI	GTMKAC	1 cut(s)	515
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.