Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

31441215 .. 31443404

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG177100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGTCGATGAAGAAGGATATGTTCTTGTACTTGAATATGAACGACCGACTTTTGGGTCTAAATCTTAGAGAGTTCAGAGAAAGATACTCTTCCAAGCCTGAGTTTGAAGTTGTTCAGGTTTTGAATTATCCGAACGGCCGTCTTCCAGGTACAAATTCCGATATCGCAAAGACAGATTGTATGACTGTGTTTAATTCCAACTTGTATATGATGAGGGTAACTGAAAATCACCGCGGGTCTCGTAATTTTGAGTTGGATGTTTATTCCTTTGATCCCACTGGGGCAGATGACTGTAAATCCATCCGTCTATGTGACAAAAGTGCCACACCTAGATTGATGTATAGTAATCGTCCTATAGTGTTCACCCTCGATGAGAAAATCTATGTTCTGGGATCACCATCATCTTCATACAGCAGACGTGGTGATGATGTGGAGGAAGAGCCACAACTTTTTTGGGTTTTTGATCCTTTTCACGAATCCTGGAAGCCACTCCCTCATCCTCTCTTCTACAATCATGATACGTATTTTGTGTATTATGATGTTTCTTATGGTCACAAGCTTTTTATTCGTACATACGATCAAAGACACGTTTTTGACGCTCACCAAGAGAGATGGGGGGGTTCAGAAAACCACGGTTATGCTAAGCATTGCTTTGAATTTAATGCTATTGTAGAATTTGGTGAAGGCTTTTTAATTGCTGTGCCTAAGAGGACGAGCAATGAACAGAAGAGCCATGAGCTTGTTGCTTATAAGTTGGATGTTAACGGGATCCCTCAGCCGCATCAGGTGCTACACGAGCTTACCGGGATGTTTTCATGGCATCCTTTGTTAAGTAACCCTCAAGTTTTTTTGGGTAAATGTGATGATAACCTTATGTGGTTGGTGTATTGTGGCAAGGATAATGTCCAGAAATTTTCTTGTATAGGCGTCGCAGTGTTTCGAGTTTCTATGTCATATGACCATGCTGGCAATGTAGTGTTTTTGGTAGATATTGAGGCTGTGGATTTTCTCGATTCAAATAGTTATGAGGTTCAAGGCGCCGAGGAGACCACTCTAGTTTACTCAGCTTCTGCCCTGTGCCATGATAATTTGAAGACCAAGGATTGGTTTTTGTATTTGGATATGGGGGATCGACTATGCAGTATAAATATTAGCAAATTCTGCAAAAGGAAGAGCTCTTTCATGTCTAAGTTCGGAGTTGTACATGGTTTCTATCCAGAAGGTCGTCCTAGTACAATTCCCAGTAGAATAAAACATTTAACTGTGGGATCAAAAGTATATCTGGTTGGCGGTCAAAGACTCGATCGAAGAATCCATAGTGATGCACATGGGAGATGTTTTGCAATGCCCAACTTAGATATTTATGCATTTAATCACAATTATGAAACAGAAGAGGGTCCTTCTATCACCCTCTGCCAATGTGAAGGTTCCATTCCCAGGTTGATTGATCCACGGACCAAAACCATTCCTATCACGATTGCTCTTGAGGATAAGATCTATGTTCTGGCAAAAAGACCATACTTGGGGGACGCAGAAGAACTTAATGATGATGATCGGCCACCACTTTTTAAGGTTTTTGATCCCCTCAAACAATCCTGGAAACACCTCCCTCATCCCCCCTGCTATAATATATCATCACGTGACACCGAGCCTTATGTGTGTAACTACTTCTCTTGGGGCCACAAGCTCATTATTCGCACCAAGGCAAAGAAAAAAAAGAAGAACCCCGGAACATACATTTTTGACACTCACCAAGAGAAATGGGAGGATGCCAAGAATATCAGTGCAATCCTTGATGAGGGTTTTAGGGTTGTGGCAGAATTCCAGGGATTTTTAATTGGCATGCCTTATAAGCGCCAAGAACTTGTTGCTTACCATTTGGATTCGAATGGGATTCCCAAACTCTCGAAGGTGCTACACGAGCTGCAAGAGATATTTAGCTCTTGTTTACTTGTCTCCGACTGTTTTCTTGGTAAATATGATGGTGACCGTATGTGGCTGTTGTATTCTGCGCAGGATAGTACGCAATTTTGGCATGCGCGGGTAGCGCTGTTTCGTGTTTTCATCTCTAATGACTATGATGGAAATCAAGTCCTCTGTGCAGATCTTGAGGCTGCACAATTTTTTAAGTTCGATAGATTTATTAGCTTGGCTTTCACTTATGCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

723

Amino Acids

83.65

Weight (kDa)

6.26

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	97 - 209	2.5e-08	FKB95, Kelch-repeats domain
Kelch_FKB95	PF25210	454 - 686	3.8e-07	FKB95, Kelch-repeats domain
DUF1668	PF07893	477 - 591	3.1e-09	Protein of unknown function (DUF1668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	750, 1851
AasI	GACNNNNNNGTC	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	2013
AccB1I	GGYRCC	1 cut(s)	1037
AccB7I	CCANNNNNTGG	1 cut(s)	1104
AccII	CGCG	2 cut(s)	234, 2041
AciI	CCGC	5 cut(s)	232, 234, 779, 1290, 2041
AclWI	GGATC	9 cut(s)	266, 400, 458, 763, 776, 1137, 1276, 1442, 1574
AcoI	YGGCCR	2 cut(s)	136, 1556
AcsI	RAATTY	6 cut(s)	154, 656, 674, 911, 1157, 1820
AcvI	CACGTG	1 cut(s)	1640
AcyI	GRCGYC	2 cut(s)	927, 1038
AfaI	GTAC	6 cut(s)	29, 151, 571, 1203, 1234, 2023
AfeI	AGCGCT	1 cut(s)	2049
AfiI	CCNNNNNNNGG	5 cut(s)	52, 1104, 1437, 1523, 1798
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	7 cut(s)	34, 107, 124, 656, 1017, 1034, 1093
AjiI	CACGTC	1 cut(s)	419
AjnI	CCWGG	5 cut(s)	145, 479, 1436, 1595, 1824
AluBI	AGCT	9 cut(s)	559, 739, 799, 1067, 1176, 1687, 1924, 1941, 2148
AluI	AGCT	9 cut(s)	559, 739, 799, 1067, 1176, 1687, 1924, 1941, 2148
Alw21I	GWGCWC	1 cut(s)	1178
Alw26I	GTCTC	3 cut(s)	243, 1040, 1960
AlwI	GGATC	9 cut(s)	266, 400, 458, 763, 776, 1137, 1276, 1442, 1574
AlwNI	CAGNNNCTG	1 cut(s)	1070
Aor51HI	AGCGCT	1 cut(s)	2049
AoxI	GGCC	3 cut(s)	136, 1556, 1678
ApeKI	GCWGC	2 cut(s)	1924, 2114
ApoI	RAATTY	6 cut(s)	154, 656, 674, 911, 1157, 1820
Asp700I	GAANNNNTTC	1 cut(s)	111
AspLEI	GCGC	5 cut(s)	1040, 1857, 2014, 2041, 2050
AspS9I	GGNCC	3 cut(s)	1397, 1455, 1678
AsuC2I	CCSGG	2 cut(s)	805, 1728
AsuHPI	GGTGA	9 cut(s)	221, 355, 387, 434, 593, 692, 1399, 1742, 1997
AsuII	TTCGAA	1 cut(s)	1886
AvaII	GGWCC	2 cut(s)	1397, 1455
BamHI	GGATCC	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	1037
BanII	GRGCYC	1 cut(s)	1178
BauI	CACGAG	2 cut(s)	794, 1919
BbrPI	CACGTG	1 cut(s)	1640
BbsI	GAAGAC	2 cut(s)	134, 1100
Bbv12I	GWGCWC	1 cut(s)	1178
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	2 cut(s)	1911, 2101
BccI	CCATC	5 cut(s)	308, 406, 606, 1976, 2075
BceAI	ACGGC	2 cut(s)	123, 151
BciT130I	CCWGG	5 cut(s)	147, 481, 1438, 1597, 1826
BcnI	CCSGG	2 cut(s)	805, 1728
BcoDI	GTCTC	3 cut(s)	243, 1040, 1960
BfaI	CTAG	3 cut(s)	330, 1055, 1230
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	3 cut(s)	1041, 1858, 2051
BglII	AGATCT	2 cut(s)	1494, 2104
BisI	GCNGC	3 cut(s)	779, 1925, 2115
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	3 cut(s)	780, 1926, 2116
Bme1390I	CCNGG	7 cut(s)	147, 481, 805, 1438, 1597, 1728, 1826
Bme18I	GGWCC	2 cut(s)	1397, 1455
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	3 cut(s)	1397, 1455, 1678
BmiI	GGNNCC	5 cut(s)	770, 1039, 1398, 1429, 1679
BmrFI	CCNGG	7 cut(s)	147, 481, 805, 1438, 1597, 1728, 1826
BmrI	ACTGGG	2 cut(s)	288, 1236
BmsI	GCATC	4 cut(s)	790, 829, 1312, 1759
BmuI	ACTGGG	2 cut(s)	288, 1236
BpiI	GAAGAC	2 cut(s)	134, 1100
Bpu10I	CCTNAGC	1 cut(s)	774
Bpu1102I	GCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	1 cut(s)	1886
BpuEI	CTTGAG	3 cut(s)	825, 1505, 2129
BpuMI	CCSGG	2 cut(s)	805, 1728
BsaAI	YACGTR	2 cut(s)	522, 1640
BsaBI	GATNNNNATC	3 cut(s)	397, 1551, 2085
BsaHI	GRCGYC	2 cut(s)	927, 1038
BsaI	GGTCTC	2 cut(s)	243, 1040
BsaJI	CCNNGG	9 cut(s)	232, 631, 1041, 1098, 1436, 1451, 1701, 1726, 1825
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 1104, 1437, 1523, 1798
Bse1I	ACTGG	2 cut(s)	283, 1242
Bse3DI	GCAATG	4 cut(s)	646, 724, 976, 1350
Bse8I	GATNNNNATC	3 cut(s)	397, 1551, 2085
BseBI	CCWGG	5 cut(s)	147, 481, 1438, 1597, 1826
BseDI	CCNNGG	9 cut(s)	232, 631, 1041, 1098, 1436, 1451, 1701, 1726, 1825
BseGI	GGATG	8 cut(s)	262, 300, 496, 763, 813, 820, 1612, 1774
BseJI	GATNNNNATC	3 cut(s)	397, 1551, 2085
BseLI	CCNNNNNNNGG	5 cut(s)	52, 1104, 1437, 1523, 1798
BseMI	GCAATG	4 cut(s)	646, 724, 976, 1350
BseMII	CTCAG	3 cut(s)	90, 788, 1077
BseNI	ACTGG	2 cut(s)	283, 1242
BseRI	GAGGAG	1 cut(s)	1058
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	1911, 2101
BsgI	GTGCAG	2 cut(s)	2100, 2121
Bsh1236I	CGCG	2 cut(s)	234, 2041
Bsh1285I	CGRYCG	3 cut(s)	46, 139, 1306
BshFI	GGCC	3 cut(s)	138, 1558, 1680
BshNI	GGYRCC	1 cut(s)	1037
BsiEI	CGRYCG	3 cut(s)	46, 139, 1306
BsiHKAI	GWGCWC	1 cut(s)	1178
BsiSI	CCGG	2 cut(s)	804, 1728
BslFI	GGGAC	1 cut(s)	1541
BslI	CCNNNNNNNGG	5 cut(s)	52, 1104, 1437, 1523, 1798
BsmAI	GTCTC	3 cut(s)	243, 1040, 1960
BsmFI	GGGAC	1 cut(s)	1541
BsnI	GGCC	3 cut(s)	138, 1558, 1680
Bso31I	GGTCTC	2 cut(s)	243, 1040
Bsp119I	TTCGAA	1 cut(s)	1886
Bsp1286I	GDGCHC	1 cut(s)	1178
Bsp1407I	TGTACA	1 cut(s)	1201
Bsp1720I	GCTNAGC	1 cut(s)	642
BspACI	CCGC	5 cut(s)	232, 234, 779, 1290, 2041
BspANI	GGCC	3 cut(s)	138, 1558, 1680
BspCNI	CTCAG	3 cut(s)	91, 787, 1076
BspFNI	CGCG	2 cut(s)	234, 2041
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	5 cut(s)	770, 1039, 1398, 1429, 1679
BspPI	GGATC	9 cut(s)	266, 400, 458, 763, 776, 1137, 1276, 1442, 1574
BspQI	GCTCTTC	3 cut(s)	432, 722, 1166
BspT104I	TTCGAA	1 cut(s)	1886
BspT107I	GGYRCC	1 cut(s)	1037
BspTNI	GGTCTC	2 cut(s)	243, 1040
BsrDI	GCAATG	4 cut(s)	646, 724, 976, 1350
BsrGI	TGTACA	1 cut(s)	1201
BsrI	ACTGG	2 cut(s)	283, 1242
BssECI	CCNNGG	9 cut(s)	232, 631, 1041, 1098, 1436, 1451, 1701, 1726, 1825
BssNI	GRCGYC	2 cut(s)	927, 1038
BssSI	CACGAG	2 cut(s)	794, 1919
BssT1I	CCWWGG	2 cut(s)	1098, 1701
Bst2BI	CACGAG	2 cut(s)	794, 1919
Bst2UI	CCWGG	5 cut(s)	147, 481, 1438, 1597, 1826
Bst4CI	ACNGT	6 cut(s)	187, 293, 635, 1264, 1964, 1991
Bst6I	CTCTTC	6 cut(s)	94, 432, 509, 722, 1166, 1386
BstACI	GRCGYC	2 cut(s)	927, 1038
BstAPI	GCANNNNNTGC	2 cut(s)	787, 1161
BstAUI	TGTACA	1 cut(s)	1201
BstBAI	YACGTR	2 cut(s)	522, 1640
BstBI	TTCGAA	1 cut(s)	1886
BstC8I	GCNNGC	3 cut(s)	967, 1844, 2037
BstDEI	CTNAG	8 cut(s)	65, 99, 642, 705, 774, 1063, 1188, 1354
BstDSI	CCRYGG	3 cut(s)	232, 631, 1451
BstEII	GGTNACC	1 cut(s)	1985
BstENI	CCTNNNNNAGG	1 cut(s)	1796
BstF5I	GGATG	8 cut(s)	262, 300, 496, 763, 813, 820, 1612, 1774
BstFNI	CGCG	2 cut(s)	234, 2041
BstH2I	RGCGCY	3 cut(s)	1041, 1858, 2051
BstHHI	GCGC	5 cut(s)	1040, 1857, 2014, 2041, 2050
BstMAI	GTCTC	3 cut(s)	243, 1040, 1960
BstMCI	CGRYCG	3 cut(s)	46, 139, 1306
BstMWI	GCNNNNNNNGC	8 cut(s)	787, 796, 1161, 1852, 1921, 2032, 2045, 2047
BstNI	CCWGG	5 cut(s)	147, 481, 1438, 1597, 1826
BstNSI	RCATGY	2 cut(s)	1846, 2039
BstPI	GGTNACC	1 cut(s)	1985
BstSCI	CCNGG	7 cut(s)	145, 479, 803, 1436, 1595, 1726, 1824
BstSFI	CTRYAG	1 cut(s)	354
BstSNI	TACGTA	1 cut(s)	522
BstUI	CGCG	2 cut(s)	234, 2041
BstV1I	GCAGC	2 cut(s)	1911, 2101
BstV2I	GAAGAC	2 cut(s)	134, 1100
BstX2I	RGATCY	3 cut(s)	768, 1494, 2104
BstYI	RGATCY	3 cut(s)	768, 1494, 2104
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	138, 1558, 1680
BtgI	CCRYGG	3 cut(s)	232, 631, 1451
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	8 cut(s)	262, 300, 496, 763, 813, 820, 1612, 1774
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	3 cut(s)	276, 939, 1789
Cac8I	GCNNGC	3 cut(s)	967, 1844, 2037
CaiI	CAGNNNCTG	1 cut(s)	1070
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	5 cut(s)	1040, 1857, 2014, 2041, 2050
Cfr13I	GGNCC	3 cut(s)	1397, 1455, 1678
Cfr42I	CCGCGG	1 cut(s)	235
CseI	GACGC	3 cut(s)	605, 916, 1538
Csp6I	GTAC	6 cut(s)	28, 150, 570, 1202, 1233, 2022
CviQI	GTAC	6 cut(s)	28, 150, 570, 1202, 1233, 2022
DdeI	CTNAG	8 cut(s)	65, 99, 642, 705, 774, 1063, 1188, 1354
DinI	GGCGCC	1 cut(s)	1039
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
EaeI	YGGCCR	2 cut(s)	136, 1556
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	6 cut(s)	94, 432, 509, 722, 1166, 1386
EarI	CTCTTC	6 cut(s)	94, 432, 509, 722, 1166, 1386
Ecl136II	GAGCTC	1 cut(s)	1176
EclXI	CGGCCG	1 cut(s)	136
Eco105I	TACGTA	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	1098, 1701
Eco24I	GRGCYC	1 cut(s)	1178
Eco31I	GGTCTC	2 cut(s)	243, 1040
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	1397, 1455
Eco47III	AGCGCT	1 cut(s)	2049
Eco52I	CGGCCG	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	1176
Eco72I	CACGTG	1 cut(s)	1640
Eco91I	GGTNACC	1 cut(s)	1985
EcoICRI	GAGCTC	1 cut(s)	1176
EcoNI	CCTNNNNNAGG	1 cut(s)	1796
EcoO109I	RGGNCCY	1 cut(s)	1397
EcoO65I	GGTNACC	1 cut(s)	1985
EcoRI	GAATTC	1 cut(s)	1820
EcoRII	CCWGG	5 cut(s)	145, 479, 1436, 1595, 1824
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	1098, 1701
EcoT22I	ATGCAT	1 cut(s)	1369
EcoT38I	GRGCYC	1 cut(s)	1178
EgeI	GGCGCC	1 cut(s)	1039
EheI	GGCGCC	1 cut(s)	1039
ErhI	CCWWGG	2 cut(s)	1098, 1701
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 635, 667
FaqI	GGGAC	1 cut(s)	1541
FauI	CCCGC	2 cut(s)	227, 2034
FauNDI	CATATG	1 cut(s)	955
Fnu4HI	GCNGC	3 cut(s)	779, 1925, 2115
FokI	GGATG	8 cut(s)	269, 287, 483, 770, 807, 820, 1599, 1781
FriOI	GRGCYC	1 cut(s)	1178
Fsp4HI	GCNGC	3 cut(s)	779, 1925, 2115
FspBI	CTAG	3 cut(s)	330, 1055, 1230
FspI	TGCGCA	1 cut(s)	2013
GlaI	GCGC	5 cut(s)	1039, 1856, 2013, 2040, 2049
GluI	GCNGC	3 cut(s)	779, 1925, 2115
HaeII	RGCGCY	3 cut(s)	1041, 1858, 2051
HaeIII	GGCC	3 cut(s)	138, 1558, 1680
HapII	CCGG	2 cut(s)	804, 1728
HgaI	GACGC	3 cut(s)	605, 916, 1538
HhaI	GCGC	5 cut(s)	1040, 1857, 2014, 2041, 2050
Hin1I	GRCGYC	2 cut(s)	927, 1038
Hin6I	GCGC	5 cut(s)	1038, 1855, 2012, 2039, 2048
HinP1I	GCGC	5 cut(s)	1038, 1855, 2012, 2039, 2048
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	6 cut(s)	476, 1013, 1299, 1311, 1883, 1894
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	2 cut(s)	804, 1728
HphI	GGTGA	9 cut(s)	221, 355, 387, 434, 593, 692, 1399, 1742, 1997
Hpy166II	GTNNAC	4 cut(s)	363, 763, 1060, 1949
Hpy188I	TCNGA	6 cut(s)	77, 132, 160, 625, 1196, 1960
Hpy188III	TCNNGA	9 cut(s)	473, 515, 907, 1010, 1217, 1474, 1484, 1906, 2108
Hpy8I	GTNNAC	4 cut(s)	363, 763, 1060, 1949
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	6 cut(s)	7, 677, 1214, 1410, 1418, 1903
HpyCH4III	ACNGT	6 cut(s)	187, 293, 635, 1264, 1964, 1991
HpyCH4IV	ACGT	4 cut(s)	418, 521, 588, 1639
HpyF10VI	GCNNNNNNNGC	8 cut(s)	787, 796, 1161, 1852, 1921, 2032, 2045, 2047
HpyF3I	CTNAG	8 cut(s)	65, 99, 642, 705, 774, 1063, 1188, 1354
HpySE526I	ACGT	4 cut(s)	418, 521, 588, 1639
Hsp92I	GRCGYC	2 cut(s)	927, 1038
HspAI	GCGC	5 cut(s)	1038, 1855, 2012, 2039, 2048
KasI	GGCGCC	1 cut(s)	1037
KspAI	GTTAAC	1 cut(s)	763
KspI	CCGCGG	1 cut(s)	235
LguI	GCTCTTC	3 cut(s)	432, 722, 1166
Lsp1109I	GCAGC	2 cut(s)	1911, 2101
LweI	GCATC	4 cut(s)	790, 829, 1312, 1759
MaeI	CTAG	3 cut(s)	330, 1055, 1230
MaeII	ACGT	4 cut(s)	418, 521, 588, 1639
MaeIII	GTNAC	7 cut(s)	217, 311, 551, 833, 1640, 1661, 1985
MflI	RGATCY	3 cut(s)	768, 1494, 2104
MhlI	GDGCHC	1 cut(s)	1178
Mly113I	GGCGCC	1 cut(s)	1038
MlyI	GAGTC	1 cut(s)	1293
MmeI	TCCRAC	4 cut(s)	222, 234, 735, 1983
Mph1103I	ATGCAT	1 cut(s)	1369
MroXI	GAANNNNTTC	1 cut(s)	111
MslI	CAYNNNNRTG	3 cut(s)	636, 1320, 1380
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	2 cut(s)	804, 1728
MspR9I	CCNGG	7 cut(s)	147, 481, 805, 1438, 1597, 1728, 1826
MvaI	CCWGG	5 cut(s)	147, 481, 1438, 1597, 1826
MvnI	CGCG	2 cut(s)	234, 2041
MwoI	GCNNNNNNNGC	8 cut(s)	787, 796, 1161, 1852, 1921, 2032, 2045, 2047
NarI	GGCGCC	1 cut(s)	1038
NciI	CCSGG	2 cut(s)	805, 1728
NdeI	CATATG	1 cut(s)	955
NlaIV	GGNNCC	5 cut(s)	770, 1039, 1398, 1429, 1679
NmeAIII	GCCGAG	1 cut(s)	1066
NmuCI	GTSAC	4 cut(s)	311, 551, 1640, 1985
NsbI	TGCGCA	1 cut(s)	2013
NsiI	ATGCAT	1 cut(s)	1369
NspI	RCATGY	2 cut(s)	1846, 2039
NspV	TTCGAA	1 cut(s)	1886
PaeI	GCATGC	2 cut(s)	1846, 2039
PagI	TCATGA	1 cut(s)	514
PciSI	GCTCTTC	3 cut(s)	432, 722, 1166
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	5 cut(s)	476, 1013, 1311, 1883, 1894
PflMI	CCANNNNNTGG	1 cut(s)	1104
PfoI	TCCNGGA	2 cut(s)	479, 1595
PkrI	GCNGC	3 cut(s)	780, 1926, 2116
Ple19I	CGATCG	1 cut(s)	1306
PleI	GAGTC	1 cut(s)	1293
PluTI	GGCGCC	1 cut(s)	1041
PmaCI	CACGTG	1 cut(s)	1640
PmlI	CACGTG	1 cut(s)	1640
PpsI	GAGTC	1 cut(s)	1293
Ppu21I	YACGTR	2 cut(s)	522, 1640
PpuMI	RGGWCCY	1 cut(s)	1397
PsiI	TTATAA	2 cut(s)	750, 1851
Psp124BI	GAGCTC	1 cut(s)	1178
Psp5II	RGGWCCY	1 cut(s)	1397
Psp6I	CCWGG	5 cut(s)	145, 479, 1436, 1595, 1824
PspCI	CACGTG	1 cut(s)	1640
PspEI	GGTNACC	1 cut(s)	1985
PspGI	CCWGG	5 cut(s)	145, 479, 1436, 1595, 1824
PspN4I	GGNNCC	5 cut(s)	770, 1039, 1398, 1429, 1679
PspPI	GGNCC	3 cut(s)	1397, 1455, 1678
PspPPI	RGGWCCY	1 cut(s)	1397
PstNI	CAGNNNCTG	1 cut(s)	1070
PsuI	RGATCY	3 cut(s)	768, 1494, 2104
PvuI	CGATCG	1 cut(s)	1306
RsaI	GTAC	6 cut(s)	29, 151, 571, 1203, 1234, 2023
RsaNI	GTAC	6 cut(s)	28, 150, 570, 1202, 1233, 2022
RseI	CAYNNNNRTG	3 cut(s)	636, 1320, 1380
SacI	GAGCTC	1 cut(s)	1178
SacII	CCGCGG	1 cut(s)	235
SapI	GCTCTTC	3 cut(s)	432, 722, 1166
SatI	GCNGC	3 cut(s)	779, 1925, 2115
Sau96I	GGNCC	3 cut(s)	1397, 1455, 1678
SchI	GAGTC	1 cut(s)	1293
ScrFI	CCNGG	7 cut(s)	147, 481, 805, 1438, 1597, 1728, 1826
SduI	GDGCHC	1 cut(s)	1178
SfaNI	GCATC	4 cut(s)	790, 829, 1312, 1759
SfcI	CTRYAG	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	1039
Sfr303I	CCGCGG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	1886
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	1397, 1455
SmiMI	CAYNNNNRTG	3 cut(s)	636, 1320, 1380
SmlI	CTYRAG	3 cut(s)	840, 1484, 2108
SmoI	CTYRAG	3 cut(s)	840, 1484, 2108
SnaBI	TACGTA	1 cut(s)	522
SphI	GCATGC	2 cut(s)	1846, 2039
SsiI	CCGC	5 cut(s)	232, 234, 779, 1290, 2041
SspDI	GGCGCC	1 cut(s)	1037
SspI	AATATT	1 cut(s)	1150
SspMI	CTAG	3 cut(s)	330, 1055, 1230
SstI	GAGCTC	1 cut(s)	1178
StyD4I	CCNGG	7 cut(s)	145, 479, 803, 1436, 1595, 1726, 1824
StyI	CCWWGG	2 cut(s)	1098, 1701
TaaI	ACNGT	6 cut(s)	187, 293, 635, 1264, 1964, 1991
TaiI	ACGT	4 cut(s)	421, 524, 591, 1642
TaqII	GACCGA	1 cut(s)	60
TatI	WGTACW	3 cut(s)	27, 1201, 1232
TauI	GCSGC	1 cut(s)	781
TfiI	GAWTC	5 cut(s)	476, 1013, 1311, 1883, 1894
TscAI	CASTG	3 cut(s)	283, 939, 1789
TseFI	GTSAC	4 cut(s)	311, 551, 1640, 1985
TseI	GCWGC	2 cut(s)	1924, 2114
Tsp45I	GTSAC	4 cut(s)	311, 551, 1640, 1985
TspDTI	ATGAA	8 cut(s)	23, 53, 396, 735, 804, 1171, 1398, 2053
TspGWI	ACGGA	2 cut(s)	293, 1468
TspRI	CASTG	3 cut(s)	283, 939, 1789
Van91I	CCANNNNNTGG	1 cut(s)	1104
VpaK11BI	GGWCC	2 cut(s)	1397, 1455
XagI	CCTNNNNNAGG	1 cut(s)	1796
XapI	RAATTY	6 cut(s)	154, 656, 674, 911, 1157, 1820
XceI	RCATGY	2 cut(s)	1846, 2039
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	3 cut(s)	330, 1055, 1230
Zsp2I	ATGCAT	1 cut(s)	1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.