Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

81591763 .. 81592662

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG528700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGTAAAATGTGGAAGACGATGCTAAAGAATGACTGGTTTTCATACGTGCGTCGACCGTGCCCTAGTCTAAACATTACTAAACCTTTGTATTCTCGTGCCCTAGATATTTTGAAGACGATGACAATGCCTTGGCAGAAGAAGGATTGGTATTTGTACATGATTGTTAGTAATTGGGGGAGTAAGTCTGAGATATGGCGTCTTAATATTGATGAATTCTGCAGAAAGAGGAGCTCTGTATTTGAGCTTGTGCATGATTTTGGACCTTTTGATGAACCCTGTTTCGGAGATTGTGTCCAAACTTGTATAACTTTGGGTCCCAATTTGTATATGGTGAATTCTCAGAACAAGATTGAGGGTTATTTCTTTGATCCGGCTAACCCAGATGGTCAATGCATCCGCCGCTTGGAGCATGCCGCCATTCCGAGACTAGTTGATCCCAGATTGTTCATGTACGGAGAGAATGTCATCGTCTGCACCATTGAGAACAAAATTTATGTTCTTGCCAAATATGCTTATGAAGTTGAGGATAATCATGAGCAGCCTCCCCTCTTTAAGGTTTATGATCCTCTTAGCCGAACCTGGAAACATCTCCCTTATCCTCCCTTCTTCAATAAATTAGAACAATCATACACTAAATATAGTGGGAGAGAACACTTTGTTTGGGGCCACAAGCTTGGTGTAAGGCATTCGGATGATGAGTCATATATTTTTGACACTCACCAACAGAAATGGGCGTATTACCGAAGAAAAGATGACTTGAAAAGAAGAGACAGCACGGAAGACGACGGCACCACTACTAGTGACGAGATCCTGAGTAAGGGTTTTGCGGCTGTTGTAGAATTTGAGGGGTTTTTAATTGGCATACCTGCCTACAGAAGATCCCAGCTTGTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

299

Amino Acids

35.42

Weight (kDa)

7.59

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	153 - 252	2e-06	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	877
AccB1I	GGYRCC	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	4 cut(s)	400, 403, 417, 830
AclWI	GGATC	5 cut(s)	365, 431, 560, 805, 876
AcsI	RAATTY	4 cut(s)	215, 337, 492, 842
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	2 cut(s)	158, 455
AfiI	CCNNNNNNNGG	4 cut(s)	284, 406, 556, 820
AgsI	TTSAA	3 cut(s)	115, 613, 763
AhlI	ACTAGT	2 cut(s)	430, 800
AjnI	CCWGG	1 cut(s)	581
AluBI	AGCT	4 cut(s)	234, 247, 676, 889
AluI	AGCT	4 cut(s)	234, 247, 676, 889
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	2 cut(s)	421, 765
AlwI	GGATC	5 cut(s)	365, 431, 560, 805, 876
AoxI	GGCC	1 cut(s)	667
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	4 cut(s)	215, 337, 492, 842
AspS9I	GGNCC	3 cut(s)	263, 317, 667
AsuHPI	GGTGA	2 cut(s)	346, 713
AvaII	GGWCC	2 cut(s)	263, 317
BaeGI	GKGCMC	2 cut(s)	65, 103
BanI	GGYRCC	1 cut(s)	791
BanII	GRGCYC	1 cut(s)	236
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	3 cut(s)	23, 122, 789
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	805
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	421, 765
BcuI	ACTAGT	2 cut(s)	430, 800
BfaI	CTAG	4 cut(s)	66, 104, 431, 801
BfmI	CTRYAG	2 cut(s)	220, 874
BfuAI	ACCTGC	1 cut(s)	877
BisI	GCNGC	4 cut(s)	403, 417, 542, 831
BlsI	GCNGC	4 cut(s)	404, 418, 543, 832
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	2 cut(s)	263, 317
BmgT120I	GGNCC	3 cut(s)	263, 317, 667
BmiI	GGNNCC	4 cut(s)	318, 319, 668, 793
BmrFI	CCNGG	1 cut(s)	583
BmsI	GCATC	2 cut(s)	12, 405
BpiI	GAAGAC	3 cut(s)	23, 122, 789
BsaAI	YACGTR	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	131
BsaXI	ACNNNNNCTCC	4 cut(s)	279, 309, 450, 480
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 406, 556, 820
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	396, 700
BseLI	CCNNNNNNNGG	4 cut(s)	284, 406, 556, 820
BseMII	CTCAG	3 cut(s)	180, 356, 806
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	244
BseSI	GKGCMC	2 cut(s)	65, 103
BseXI	GCAGC	1 cut(s)	553
BseYI	CCCAGC	1 cut(s)	885
BsgI	GTGCAG	1 cut(s)	460
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	669
BshNI	GGYRCC	1 cut(s)	791
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	4 cut(s)	284, 406, 556, 820
BsmAI	GTCTC	2 cut(s)	421, 765
BsmFI	GGGAC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	669
Bsp1286I	GDGCHC	3 cut(s)	65, 103, 236
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	5 cut(s)	370, 436, 565, 810, 881
BspACI	CCGC	4 cut(s)	400, 403, 417, 830
BspANI	GGCC	1 cut(s)	669
BspCNI	CTCAG	3 cut(s)	181, 355, 807
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	4 cut(s)	318, 319, 668, 793
BspMAI	CTGCAG	1 cut(s)	224
BspMI	ACCTGC	1 cut(s)	877
BspPI	GGATC	5 cut(s)	365, 431, 560, 805, 876
BspT107I	GGYRCC	1 cut(s)	791
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	5 cut(s)	370, 436, 565, 810, 881
BssNI	GRCGYC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	763
BstACI	GRCGYC	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	4 cut(s)	189, 342, 572, 815
BstENI	CCTNNNNNAGG	2 cut(s)	554, 818
BstF5I	GGATG	2 cut(s)	396, 700
BstKTI	GATC	5 cut(s)	373, 439, 568, 813, 884
BstMAI	GTCTC	2 cut(s)	421, 765
BstMBI	GATC	5 cut(s)	370, 436, 565, 810, 881
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	2 cut(s)	402, 512
BstNI	CCWGG	1 cut(s)	583
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	581
BstSFI	CTRYAG	2 cut(s)	220, 874
BstSLI	GKGCMC	2 cut(s)	65, 103
BstV1I	GCAGC	1 cut(s)	553
BstV2I	GAAGAC	3 cut(s)	23, 122, 789
BstX2I	RGATCY	2 cut(s)	810, 881
BstXI	CCANNNNNNTGG	1 cut(s)	677
BstYI	RGATCY	2 cut(s)	810, 881
BsuRI	GGCC	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	396, 700
BveI	ACCTGC	1 cut(s)	877
Cac8I	GCNNGC	1 cut(s)	414
CciI	TCATGA	1 cut(s)	535
Cfr13I	GGNCC	3 cut(s)	263, 317, 667
CseI	GACGC	2 cut(s)	41, 188
Csp6I	GTAC	2 cut(s)	157, 454
CviAII	CATG	5 cut(s)	160, 254, 413, 451, 536
CviJI	RGCY	9 cut(s)	234, 247, 377, 544, 576, 669, 676, 833, 889
CviKI_1	RGCY	9 cut(s)	234, 247, 377, 544, 576, 669, 676, 833, 889
CviQI	GTAC	2 cut(s)	157, 454
DdeI	CTNAG	4 cut(s)	189, 342, 572, 815
DpnI	GATC	5 cut(s)	372, 438, 567, 812, 883
DpnII	GATC	5 cut(s)	370, 436, 565, 810, 881
Eam1104I	CTCTTC	1 cut(s)	763
EarI	CTCTTC	1 cut(s)	763
EciI	GGCGGA	1 cut(s)	389
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	263, 317
Eco53kI	GAGCTC	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	234
EcoNI	CCTNNNNNAGG	2 cut(s)	554, 818
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRI	GAATTC	2 cut(s)	215, 337
EcoRII	CCWGG	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	131
EcoT22I	ATGCAT	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	5 cut(s)	163, 257, 416, 454, 539
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	5 cut(s)	159, 253, 412, 450, 535
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	4 cut(s)	403, 417, 542, 831
FokI	GGATG	2 cut(s)	383, 707
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	403, 417, 542, 831
FspBI	CTAG	4 cut(s)	66, 104, 431, 801
GluI	GCNGC	4 cut(s)	403, 417, 542, 831
GsaI	CCCAGC	1 cut(s)	889
HaeIII	GGCC	1 cut(s)	669
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	2 cut(s)	41, 188
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	5 cut(s)	163, 257, 416, 454, 539
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	1 cut(s)	701
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	2 cut(s)	346, 713
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	5 cut(s)	190, 287, 345, 426, 694
Hpy188III	TCNNGA	2 cut(s)	536, 814
Hpy8I	GTNNAC	1 cut(s)	56
Hpy99I	CGWCG	2 cut(s)	57, 791
HpyAV	CCTTC	2 cut(s)	136, 616
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	222, 253, 396, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	402, 512
HpyF3I	CTNAG	4 cut(s)	189, 342, 572, 815
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	5 cut(s)	163, 257, 416, 454, 539
KflI	GGGWCCC	1 cut(s)	317
Kzo9I	GATC	5 cut(s)	370, 436, 565, 810, 881
LmnI	GCTCC	2 cut(s)	231, 409
LpnPI	CCDG	9 cut(s)	22, 292, 387, 396, 454, 568, 595, 827, 882
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	2 cut(s)	12, 405
MaeI	CTAG	4 cut(s)	66, 104, 431, 801
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	803
MalI	GATC	5 cut(s)	372, 438, 567, 812, 883
MboI	GATC	5 cut(s)	370, 436, 565, 810, 881
MboII	GAAGA	8 cut(s)	28, 127, 151, 601, 759, 780, 794, 891
MflI	RGATCY	2 cut(s)	810, 881
MhlI	GDGCHC	3 cut(s)	65, 103, 236
MluCI	AATT	8 cut(s)	172, 215, 322, 337, 492, 617, 842, 858
MlyI	GAGTC	1 cut(s)	710
MnlI	CCTC	8 cut(s)	222, 349, 520, 555, 560, 579, 612, 841
Mph1103I	ATGCAT	1 cut(s)	398
MseI	TTAA	4 cut(s)	204, 555, 857, 898
MslI	CAYNNNNRTG	1 cut(s)	693
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	583
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	402, 512
NdeII	GATC	5 cut(s)	370, 436, 565, 810, 881
NlaIII	CATG	5 cut(s)	163, 257, 416, 454, 539
NlaIV	GGNNCC	4 cut(s)	318, 319, 668, 793
NmuCI	GTSAC	1 cut(s)	803
NsiI	ATGCAT	1 cut(s)	398
NspI	RCATGY	1 cut(s)	416
PaeI	GCATGC	1 cut(s)	416
PagI	TCATGA	1 cut(s)	535
PctI	GAATGC	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	404, 418, 543, 832
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
Ppu21I	YACGTR	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	581
PspFI	CCCAGC	1 cut(s)	885
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	4 cut(s)	318, 319, 668, 793
PspPI	GGNCC	3 cut(s)	263, 317, 667
PspPPI	RGGWCCY	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	224
PsuI	RGATCY	2 cut(s)	810, 881
RsaI	GTAC	2 cut(s)	158, 455
RsaNI	GTAC	2 cut(s)	157, 454
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	54
SaqAI	TTAA	4 cut(s)	204, 555, 857, 898
SatI	GCNGC	4 cut(s)	403, 417, 542, 831
Sau3AI	GATC	5 cut(s)	370, 436, 565, 810, 881
Sau96I	GGNCC	3 cut(s)	263, 317, 667
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	3 cut(s)	65, 103, 236
SfaNI	GCATC	2 cut(s)	12, 405
SfcI	CTRYAG	2 cut(s)	220, 874
SinI	GGWCC	2 cut(s)	263, 317
SmiMI	CAYNNNNRTG	1 cut(s)	693
SpeI	ACTAGT	2 cut(s)	430, 800
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	8 cut(s)	172, 215, 322, 337, 492, 617, 842, 858
SsiI	CCGC	4 cut(s)	400, 403, 417, 830
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	4 cut(s)	66, 104, 431, 801
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	581
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	55
TasI	AATT	8 cut(s)	172, 215, 322, 337, 492, 617, 842, 858
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	3 cut(s)	405, 419, 833
Tru1I	TTAA	4 cut(s)	204, 555, 857, 898
Tru9I	TTAA	4 cut(s)	204, 555, 857, 898
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	5 cut(s)	33, 228, 288, 439, 534
TspGWI	ACGGA	2 cut(s)	471, 794
VpaK11BI	GGWCC	2 cut(s)	263, 317
XagI	CCTNNNNNAGG	2 cut(s)	554, 818
XapI	RAATTY	4 cut(s)	215, 337, 492, 842
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	4 cut(s)	66, 104, 431, 801
Zsp2I	ATGCAT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.