Rh5AG537400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000563
Physical Location & Seq
Reverse (-)
92451009 .. 92452118
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG537400.1

Sequence Viewer

Length: 648 bp
ATGGAACATACAAGAGTGGGTTCTAAAGTGCACATGGTTAACTGTAAATACTTTTATGATTCTGACGAGGAGGAATTTGAGGATGGAGTGGGTTATTGCTTTGATCCCACTGATCTAGACGGTCCATCCATTCGTCAATGCGACCACTGTAATGATGATGATTTGCTTCACAAGGCCGCTTTCACCCTCGAAGACAAATTTTATTCGTTTTATCCCTTTAAGGTTTTTGATCCTCTTCACCAACTCTGGAAACGACTTCTGCCTGATCCACCGTATTTTAAAGAAGTTTCTGGTCTAGGCCACAAGCTCGTGTTTAGTACTGGGAAGCAGTCATGCCTGTTCGACACTCGGGAAGAGAAATGGGAAGATTGGCCAAAGAGAAATAAAGAAATTGAAAAATCCGTGGACGGTAAGTATCTAATATTTGATCATGATGACATCCGGACTACCCATAGGATGCAACCTGCTGTAGAACATGAGGGATTTTTAATTGCTCATGTTGGATATAGACTTGCTGCTTTTCGGTGGGATTCAAATGGAATCCCAAAGCTGTATCGGGTGCTGAATGAGCTTGACGGGGTATTCCATCCTGGACTATACATTAAGGGTAATGCGCATGCAATGGGAAAATGTGACGGTGGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

25.02

Weight (kDa)

5.6

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 615
Acc36I ACCTGC 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 441
AciI CCGC 1 cut(s) 177
AclWI GGATC 3 cut(s) 98, 224, 260
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 2 cut(s) 74, 197
AfaI GTAC 1 cut(s) 319
AgsI TTSAA 2 cut(s) 395, 534
AjnI CCWGG 1 cut(s) 589
AluBI AGCT 3 cut(s) 307, 550, 571
AluI AGCT 3 cut(s) 307, 550, 571
Alw21I GWGCWC 1 cut(s) 33
Alw44I GTGCAC 1 cut(s) 29
AlwI GGATC 3 cut(s) 98, 224, 260
Ama87I CYCGRG 1 cut(s) 348
Aor13HI TCCGGA 1 cut(s) 441
AoxI GGCC 3 cut(s) 174, 298, 371
ApaLI GTGCAC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 2 cut(s) 74, 197
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 175, 230
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 373
BauI CACGAG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 502
BccI CCATC 3 cut(s) 77, 133, 594
BciT130I CCWGG 1 cut(s) 591
BclI TGATCA 1 cut(s) 427
BfaI CTAG 2 cut(s) 116, 296
BfmI CTRYAG 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 2 cut(s) 177, 516
BlsI GCNGC 2 cut(s) 178, 517
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 591
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 591
BmrI ACTGGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 441
Bse1I ACTGG 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 627
BseAI TCCGGA 1 cut(s) 441
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 5 cut(s) 88, 125, 438, 462, 586
BseMI GCAATG 1 cut(s) 627
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 502
BshFI GGCC 3 cut(s) 176, 300, 373
BsiHKAI GWGCWC 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 1 cut(s) 442
BsnI GGCC 3 cut(s) 176, 300, 373
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 33
Bsp13I TCCGGA 1 cut(s) 441
Bsp143I GATC 5 cut(s) 103, 112, 229, 265, 427
BspACI CCGC 1 cut(s) 177
BspANI GGCC 3 cut(s) 176, 300, 373
BspEI TCCGGA 1 cut(s) 441
BspHI TCATGA 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 3 cut(s) 98, 224, 260
BsrDI GCAATG 1 cut(s) 627
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 5 cut(s) 103, 112, 229, 265, 427
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 6 cut(s) 44, 122, 149, 273, 410, 638
Bst6I CTCTTC 2 cut(s) 240, 348
BstC8I GCNNGC 1 cut(s) 618
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 5 cut(s) 88, 125, 438, 462, 586
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 5 cut(s) 106, 115, 232, 268, 430
BstMBI GATC 5 cut(s) 103, 112, 229, 265, 427
BstMWI GCNNNNNNNGC 1 cut(s) 568
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 589
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 3 cut(s) 176, 300, 373
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 5 cut(s) 88, 125, 438, 462, 586
BtsIMutI CAGTG 2 cut(s) 108, 145
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 618
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 616
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 318
CviAII CATG 6 cut(s) 34, 333, 431, 476, 497, 617
CviJI RGCY 7 cut(s) 176, 300, 307, 373, 550, 571, 642
CviKI_1 RGCY 7 cut(s) 176, 300, 307, 373, 550, 571, 642
CviQI GTAC 1 cut(s) 318
DpnI GATC 5 cut(s) 105, 114, 231, 267, 429
DpnII GATC 5 cut(s) 103, 112, 229, 265, 427
DraI TTTAAA 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 371
Eam1104I CTCTTC 2 cut(s) 240, 348
EarI CTCTTC 2 cut(s) 240, 348
Eco47I GGWCC 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 589
FaeI CATG 6 cut(s) 37, 336, 434, 479, 500, 620
FatI CATG 6 cut(s) 33, 332, 430, 475, 496, 616
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 177, 516
FokI GGATG 5 cut(s) 95, 112, 425, 469, 573
Fsp4HI GCNGC 2 cut(s) 177, 516
FspAI RTGCGCAY 1 cut(s) 615
FspBI CTAG 2 cut(s) 116, 296
FspI TGCGCA 1 cut(s) 615
GlaI GCGC 1 cut(s) 615
GluI GCNGC 2 cut(s) 177, 516
HaeIII GGCC 3 cut(s) 176, 300, 373
HapII CCGG 1 cut(s) 442
HhaI GCGC 1 cut(s) 616
Hin1II CATG 6 cut(s) 37, 336, 434, 479, 500, 620
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 3 cut(s) 59, 530, 540
HpaI GTTAAC 1 cut(s) 40
HpaII CCGG 1 cut(s) 442
HphI GGTGA 2 cut(s) 175, 230
Hpy166II GTNNAC 3 cut(s) 31, 40, 406
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 5 cut(s) 116, 247, 350, 431, 442
Hpy8I GTNNAC 3 cut(s) 31, 40, 406
HpyCH4III ACNGT 6 cut(s) 44, 122, 149, 273, 410, 638
HpyCH4V TGCA 3 cut(s) 31, 460, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 568
Hsp92II CATG 6 cut(s) 37, 336, 434, 479, 500, 620
HspAI GCGC 1 cut(s) 614
Kpn2I TCCGGA 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 427
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 5 cut(s) 103, 112, 229, 265, 427
LpnPI CCDG 9 cut(s) 232, 276, 276, 306, 350, 455, 477, 576, 603
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 1 cut(s) 447
MaeI CTAG 2 cut(s) 116, 296
MaeIII GTNAC 1 cut(s) 632
MalI GATC 5 cut(s) 105, 114, 231, 267, 429
MboI GATC 5 cut(s) 103, 112, 229, 265, 427
MboII GAAGA 4 cut(s) 203, 227, 365, 377
MhlI GDGCHC 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 373
MluCI AATT 4 cut(s) 74, 197, 390, 489
MluNI TGGCCA 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 6 cut(s) 61, 64, 73, 197, 243, 472
Mox20I TGGCCA 1 cut(s) 373
MroI TCCGGA 1 cut(s) 441
MscI TGGCCA 1 cut(s) 373
MseI TTAA 5 cut(s) 39, 219, 279, 488, 603
MslI CAYNNNNRTG 1 cut(s) 150
Msp20I TGGCCA 1 cut(s) 373
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 591
MwoI GCNNNNNNNGC 1 cut(s) 568
NdeII GATC 5 cut(s) 103, 112, 229, 265, 427
NlaIII CATG 6 cut(s) 37, 336, 434, 479, 500, 620
NmuCI GTSAC 1 cut(s) 632
NsbI TGCGCA 1 cut(s) 615
NspI RCATGY 1 cut(s) 620
PaeI GCATGC 1 cut(s) 620
PagI TCATGA 1 cut(s) 430
PfeI GAWTC 3 cut(s) 59, 530, 540
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 2 cut(s) 178, 517
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 5 cut(s) 39, 219, 279, 488, 603
SatI GCNGC 2 cut(s) 177, 516
Sau3AI GATC 5 cut(s) 103, 112, 229, 265, 427
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 591
SduI GDGCHC 1 cut(s) 33
SetI ASST 5 cut(s) 225, 309, 466, 552, 573
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 1 cut(s) 468
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 150
SphI GCATGC 1 cut(s) 620
Sse9I AATT 4 cut(s) 74, 197, 390, 489
SsiI CCGC 1 cut(s) 177
SspI AATATT 1 cut(s) 423
SspMI CTAG 2 cut(s) 116, 296
StyD4I CCNGG 1 cut(s) 589
TaaI ACNGT 6 cut(s) 44, 122, 149, 273, 410, 638
TaqI TCGA 2 cut(s) 189, 342
TasI AATT 4 cut(s) 74, 197, 390, 489
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 3 cut(s) 59, 530, 540
Tru1I TTAA 5 cut(s) 39, 219, 279, 488, 603
Tru9I TTAA 5 cut(s) 39, 219, 279, 488, 603
TscAI CASTG 2 cut(s) 115, 152
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 632
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 2 cut(s) 115, 152
VneI GTGCAC 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 2 cut(s) 74, 197
XbaI TCTAGA 1 cut(s) 115
XceI RCATGY 1 cut(s) 620
XspI CTAG 2 cut(s) 116, 296
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.