Rh4AG177300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000563
Physical Location & Seq
Forward (+)
44567639 .. 44568037
399 bp
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UTR
Exon/CDS
Intron
Rh4AG177300.1

Sequence Viewer

Length: 399 bp
ATGATGAGGGTAACAGAAAATCACCGCGGGTCTTGTAATTTTGAGTTAGATGTTTATTCCTTTGATCCCACTGGGGCAGATGACTGTAAATCCATCCGTCTATGTGACAAAAGTGCCACACCTAGATTGATGTATAGTAATCGTCCTATAGTGTTCACCCTCGATGAGAAAATCTATGTTCTGGGAGCACCATCATCTTCATACAGTAGACGTGGTGATGATATGGAGGAAGAGCTACAACTTTTTTGGGTTTTTGATCCTTTTCACGAATCCTGGAAGCCACTCCCTCATCCTCTCTTCTACAATCATGATACGTATGTTGTGTATCATGATGTTTCTTATGGTCACAAGCTTTTTATTTGTACATACGATCAAAGACACGTTTTTGACGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.61

Weight (kDa)

5.5

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 28 - 130 4.3e-07 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 208
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 25, 27
AclWI GGATC 2 cut(s) 59, 251
AfaI GTAC 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 379
AjiI CACGTC 1 cut(s) 212
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 2 cut(s) 235, 352
AluI AGCT 2 cut(s) 235, 352
Alw21I GWGCWC 1 cut(s) 190
AlwI GGATC 2 cut(s) 59, 251
AsuHPI GGTGA 3 cut(s) 14, 148, 227
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
Bbv12I GWGCWC 1 cut(s) 190
BccI CCATC 2 cut(s) 101, 199
BciT130I CCWGG 1 cut(s) 274
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 274
BmrI ACTGGG 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 2 cut(s) 93, 289
BseNI ACTGG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 190
Bsp1407I TGTACA 1 cut(s) 362
Bsp143I GATC 3 cut(s) 64, 256, 370
BspACI CCGC 2 cut(s) 25, 27
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 2 cut(s) 307, 328
BspPI GGATC 2 cut(s) 59, 251
BspQI GCTCTTC 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 362
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 3 cut(s) 64, 256, 370
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 2 cut(s) 86, 206
Bst6I CTCTTC 2 cut(s) 225, 302
BstAUI TGTACA 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 2 cut(s) 93, 289
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 3 cut(s) 67, 259, 373
BstMBI GATC 3 cut(s) 64, 256, 370
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 147
BstSNI TACGTA 1 cut(s) 315
BstUI CGCG 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 25
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 93, 289
BtsIMutI CAGTG 1 cut(s) 69
CciI TCATGA 2 cut(s) 307, 328
Cfr42I CCGCGG 1 cut(s) 28
Csp6I GTAC 1 cut(s) 363
CviAII CATG 2 cut(s) 308, 329
CviJI RGCY 3 cut(s) 235, 280, 352
CviKI_1 RGCY 3 cut(s) 235, 280, 352
CviQI GTAC 1 cut(s) 363
DpnI GATC 3 cut(s) 66, 258, 372
DpnII GATC 3 cut(s) 64, 256, 370
Eam1104I CTCTTC 2 cut(s) 225, 302
EarI CTCTTC 2 cut(s) 225, 302
Eco105I TACGTA 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 272
FaeI CATG 2 cut(s) 311, 332
FatI CATG 2 cut(s) 307, 328
FauI CCCGC 1 cut(s) 20
FblI GTMKAC 1 cut(s) 208
FokI GGATG 2 cut(s) 80, 276
FspBI CTAG 1 cut(s) 123
Hin1II CATG 2 cut(s) 311, 332
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 1 cut(s) 269
HphI GGTGA 3 cut(s) 14, 148, 227
Hpy166II GTNNAC 2 cut(s) 156, 209
Hpy188III TCNNGA 3 cut(s) 266, 308, 329
Hpy8I GTNNAC 2 cut(s) 156, 209
HpyCH4III ACNGT 2 cut(s) 86, 206
HpyCH4IV ACGT 3 cut(s) 211, 314, 381
HpySE526I ACGT 3 cut(s) 211, 314, 381
Hsp92II CATG 2 cut(s) 311, 332
KspI CCGCGG 1 cut(s) 28
Kzo9I GATC 3 cut(s) 64, 256, 370
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 4 cut(s) 57, 167, 259, 286
MaeI CTAG 1 cut(s) 123
MaeII ACGT 3 cut(s) 211, 314, 381
MaeIII GTNAC 3 cut(s) 10, 104, 344
MalI GATC 3 cut(s) 66, 258, 372
MboI GATC 3 cut(s) 64, 256, 370
MboII GAAGA 3 cut(s) 189, 242, 289
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 1 cut(s) 37
MnlI CCTC 4 cut(s) 170, 220, 297, 303
MspA1I CMGCKG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 1 cut(s) 27
NdeII GATC 3 cut(s) 64, 256, 370
NlaIII CATG 2 cut(s) 311, 332
NmuCI GTSAC 2 cut(s) 104, 344
PagI TCATGA 2 cut(s) 307, 328
PciSI GCTCTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SacII CCGCGG 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 225
Sau3AI GATC 3 cut(s) 64, 256, 370
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 190
SetI ASST 6 cut(s) 124, 214, 237, 317, 354, 384
SfcI CTRYAG 1 cut(s) 147
Sfr303I CCGCGG 1 cut(s) 28
SgrBI CCGCGG 1 cut(s) 28
SnaBI TACGTA 1 cut(s) 315
Sse9I AATT 1 cut(s) 37
SsiI CCGC 2 cut(s) 25, 27
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 86, 206
TaiI ACGT 3 cut(s) 214, 317, 384
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 37
TatI WGTACW 1 cut(s) 362
TfiI GAWTC 1 cut(s) 269
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 2 cut(s) 104, 344
Tsp45I GTSAC 2 cut(s) 104, 344
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 208
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.