Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

10961207 .. 10962319

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCTGAACAAGGAGTGCTTTTCAAATGTCAAGAAGCCATGGGATCGACTATGCCGTCTTAATATTAGCAAGCAAATGTGTACCTCCGTCTCCTCAAAACAGCCCAACAACAAAGAGTGGTTTTTGTACTTGAATATGCGCAATCGAGTATGCCGTCTAAACATTAGGGAATTCTGCAAAAGGAGGCCAAAGTGTGAACTTGTGCATGATTATTATCCAGGCTGTCCTCGGAGGACAATTCCCACCTTGATGAAACCAGTAGTTGTTGGTTCCGAAGTTTATATGTGGGGTGGTAGATCGAACCCCAATGTATATTCCTTTGATCCAGCTAGGAGTCCACCCTTCCGTCTCTGCGAGGGTCTGATTTTTAGATTGGTTCCACCCAAGATCGATTTCCCTTACATTATAGTGTTCAGCCTTGAGGAGAAAATCTATGTACTTGAAGAAGATCTATCCCATTTTAGGGTTTTTGATACGGTTCACCAATCCTGGAAAGAGCTTCCTCACCCCCCTTATTTGCCTAATACTAATCCCCGAGTGTGTGACTACTGCGTTTGCAGCCACATACTCTATATCAGTACCGGACCAGACATTTCATACATTTTTGACACTCTTGAAGAGAAATGGGAGGATGCGAAGACAATCCATAATGGTGTTATAGAGAGATTCTTGGCTTTCACAGAATTTGAGGGATTTTTAATTTGCGTGACATCGTATATGAATAAGGTCGTTGCTTATAAGTTGGATTCAAATGGAATCCCCAAACCTGAGTCGTATCAAGTGCTACGTGAGATATCTTCTACAGGAGAGATGGCTTTCTTGGGTAAATGTGATGGTGGCCGACTGTGGTTGGTGAACTGTATCATGGATGACTCTTATAACCGTATGTATAACGCCACACAGGTAATACTGTTTAAAGCTTCCGTCTCAACAAACCTTGATGGCAATCAAGCTCTCTGTGTAGAAATCGAGGCTCGAAAATTTCTCCATTTTGAACCTTCCAATTATTGCTCGTCAGCTTTCAGTATGTGCCATGATCTGGGGCAAGCTCGATCCGCACTGAGAAAGAAAAAAAGCATTGATGTTAAGCAAAAAAAACTAGTTTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

370

Amino Acids

43.0

Weight (kDa)

8.72

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	85 - 267	5.2e-08	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	738, 879
AasI	GACNNNNNNGTC	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	1039
AciI	CCGC	1 cut(s)	1056
AclWI	GGATC	3 cut(s)	51, 317, 1047
AcoI	YGGCCR	1 cut(s)	838
AcsI	RAATTY	3 cut(s)	170, 683, 980
AfaI	GTAC	4 cut(s)	82, 128, 438, 580
AfiI	CCNNNNNNNGG	3 cut(s)	462, 463, 1039
AgsI	TTSAA	6 cut(s)	24, 133, 443, 617, 750, 995
AhlI	ACTAGT	1 cut(s)	1099
AjnI	CCWGG	2 cut(s)	217, 488
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	6 cut(s)	329, 499, 920, 953, 1019, 1049
AluI	AGCT	6 cut(s)	329, 499, 920, 953, 1019, 1049
Alw26I	GTCTC	3 cut(s)	94, 353, 931
AlwI	GGATC	3 cut(s)	51, 317, 1047
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	2 cut(s)	185, 838
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	3 cut(s)	170, 683, 980
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	3 cut(s)	473, 497, 865
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	644
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	3 cut(s)	805, 827, 935
BceAI	ACGGC	2 cut(s)	39, 138
BciT130I	CCWGG	2 cut(s)	219, 490
BcoDI	GTCTC	3 cut(s)	94, 353, 931
BcuI	ACTAGT	1 cut(s)	1099
BfaI	CTAG	2 cut(s)	330, 1100
BfmI	CTRYAG	1 cut(s)	801
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	1 cut(s)	559
BlsI	GCNGC	1 cut(s)	560
Bme1390I	CCNGG	2 cut(s)	219, 490
Bme18I	GGWCC	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	271, 378
BmrFI	CCNGG	2 cut(s)	219, 490
BmsI	GCATC	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	644
BpuEI	CTTGAG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	788
BsaBI	GATNNNNATC	2 cut(s)	213, 945
BsaJI	CCNNGG	2 cut(s)	38, 227
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	3 cut(s)	462, 463, 1039
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	2 cut(s)	213, 945
BseBI	CCWGG	2 cut(s)	219, 490
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	38, 227
BseGI	GGATG	2 cut(s)	637, 874
BseJI	GATNNNNATC	2 cut(s)	213, 945
BseLI	CCNNNNNNNGG	3 cut(s)	462, 463, 1039
BseMII	CTCAG	2 cut(s)	759, 1052
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	82, 437
BseXI	GCAGC	1 cut(s)	570
BshFI	GGCC	2 cut(s)	187, 840
BshVI	ATCGAT	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	3 cut(s)	462, 463, 1039
BsmAI	GTCTC	3 cut(s)	94, 353, 931
BsmBI	CGTCTC	3 cut(s)	94, 353, 931
BsnI	GGCC	2 cut(s)	187, 840
BsoBI	CYCGRG	1 cut(s)	534
Bsp143I	GATC	7 cut(s)	43, 296, 322, 387, 448, 1036, 1052
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	1 cut(s)	1056
BspANI	GGCC	2 cut(s)	187, 840
BspCNI	CTCAG	2 cut(s)	760, 1053
BspDI	ATCGAT	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	271, 378
BspPI	GGATC	3 cut(s)	51, 317, 1047
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	38, 227
BssMI	GATC	7 cut(s)	43, 296, 322, 387, 448, 1036, 1052
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	2 cut(s)	219, 490
Bst4CI	ACNGT	5 cut(s)	478, 846, 860, 884, 912
Bst6I	CTCTTC	1 cut(s)	612
BstBAI	YACGTR	1 cut(s)	788
BstC8I	GCNNGC	2 cut(s)	71, 1047
BstDEI	CTNAG	2 cut(s)	768, 1061
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	637, 874
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	7 cut(s)	46, 299, 325, 390, 451, 1039, 1055
BstMAI	GTCTC	3 cut(s)	94, 353, 931
BstMBI	GATC	7 cut(s)	43, 296, 322, 387, 448, 1036, 1052
BstMWI	GCNNNNNNNGC	2 cut(s)	558, 1055
BstNI	CCWGG	2 cut(s)	219, 490
BstSCI	CCNGG	2 cut(s)	217, 488
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	1 cut(s)	570
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	187, 840
BsuTUI	ATCGAT	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	637, 874
BtsIMutI	CAGTG	1 cut(s)	1058
Cac8I	GCNNGC	2 cut(s)	71, 1047
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	584
ClaI	ATCGAT	1 cut(s)	390
Csp6I	GTAC	4 cut(s)	81, 127, 437, 579
CviAII	CATG	4 cut(s)	39, 206, 865, 1034
CviQI	GTAC	4 cut(s)	81, 127, 437, 579
DdeI	CTNAG	2 cut(s)	768, 1061
DpnI	GATC	7 cut(s)	45, 298, 324, 389, 450, 1038, 1054
DpnII	GATC	7 cut(s)	43, 296, 322, 387, 448, 1036, 1052
DraI	TTTAAA	1 cut(s)	916
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	838
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	795
Eco47I	GGWCC	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	217, 488
EcoRV	GATATC	1 cut(s)	795
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
Esp3I	CGTCTC	3 cut(s)	94, 353, 931
FaeI	CATG	4 cut(s)	42, 209, 868, 1037
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	4 cut(s)	38, 205, 864, 1033
Fnu4HI	GCNGC	1 cut(s)	559
FokI	GGATG	2 cut(s)	644, 881
Fsp4HI	GCNGC	1 cut(s)	559
FspBI	CTAG	2 cut(s)	330, 1100
FspI	TGCGCA	1 cut(s)	140
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	559
HaeIII	GGCC	2 cut(s)	187, 840
HapII	CCGG	1 cut(s)	582
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	42, 209, 868, 1037
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	918
HinfI	GANTC	6 cut(s)	334, 666, 746, 756, 770, 872
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	3 cut(s)	473, 497, 865
Hpy166II	GTNNAC	5 cut(s)	81, 197, 338, 481, 856
Hpy188I	TCNGA	4 cut(s)	231, 274, 363, 1112
Hpy188III	TCNNGA	2 cut(s)	31, 614
Hpy8I	GTNNAC	5 cut(s)	81, 197, 338, 481, 856
HpyAV	CCTTC	2 cut(s)	352, 1008
HpyCH4III	ACNGT	5 cut(s)	478, 846, 860, 884, 912
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	3 cut(s)	177, 205, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	558, 1055
HpyF3I	CTNAG	2 cut(s)	768, 1061
HpySE526I	ACGT	1 cut(s)	787
Hsp92II	CATG	4 cut(s)	42, 209, 868, 1037
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	7 cut(s)	43, 296, 322, 387, 448, 1036, 1052
Lsp1109I	GCAGC	1 cut(s)	570
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	330, 1100
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	2 cut(s)	542, 706
MalI	GATC	7 cut(s)	45, 298, 324, 389, 450, 1038, 1054
MboI	GATC	7 cut(s)	43, 296, 322, 387, 448, 1036, 1052
MboII	GAAGA	5 cut(s)	455, 458, 629, 649, 789
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	6 cut(s)	170, 237, 683, 699, 980, 1003
MlyI	GAGTC	3 cut(s)	343, 779, 866
MmeI	TCCRAC	1 cut(s)	723
MseI	TTAA	4 cut(s)	60, 698, 915, 1086
MslI	CAYNNNNRTG	3 cut(s)	248, 407, 651
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	2 cut(s)	219, 490
MvaI	CCWGG	2 cut(s)	219, 490
MwoI	GCNNNNNNNGC	2 cut(s)	558, 1055
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	7 cut(s)	43, 296, 322, 387, 448, 1036, 1052
NlaIII	CATG	4 cut(s)	42, 209, 868, 1037
NlaIV	GGNNCC	2 cut(s)	271, 378
NmuCI	GTSAC	2 cut(s)	542, 706
NsbI	TGCGCA	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	2 cut(s)	52, 151
PfeI	GAWTC	3 cut(s)	666, 746, 756
PflMI	CCANNNNNTGG	1 cut(s)	1039
PfoI	TCCNGGA	1 cut(s)	488
PkrI	GCNGC	1 cut(s)	560
PleI	GAGTC	3 cut(s)	342, 778, 866
PpsI	GAGTC	3 cut(s)	342, 778, 866
Ppu21I	YACGTR	1 cut(s)	788
PsiI	TTATAA	2 cut(s)	738, 879
Psp6I	CCWGG	2 cut(s)	217, 488
PspGI	CCWGG	2 cut(s)	217, 488
PspN4I	GGNNCC	2 cut(s)	271, 378
PspPI	GGNCC	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	4 cut(s)	82, 128, 438, 580
RsaNI	GTAC	4 cut(s)	81, 127, 437, 579
RseI	CAYNNNNRTG	3 cut(s)	248, 407, 651
SaqAI	TTAA	4 cut(s)	60, 698, 915, 1086
SatI	GCNGC	1 cut(s)	559
Sau3AI	GATC	7 cut(s)	43, 296, 322, 387, 448, 1036, 1052
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	3 cut(s)	343, 779, 866
ScrFI	CCNGG	2 cut(s)	219, 490
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	801
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	3 cut(s)	248, 407, 651
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SpeI	ACTAGT	1 cut(s)	1099
Sse9I	AATT	6 cut(s)	170, 237, 683, 699, 980, 1003
SsiI	CCGC	1 cut(s)	1056
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	330, 1100
StyD4I	CCNGG	2 cut(s)	217, 488
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	5 cut(s)	478, 846, 860, 884, 912
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	7 cut(s)	46, 145, 299, 390, 969, 976, 1051
TasI	AATT	6 cut(s)	170, 237, 683, 699, 980, 1003
TatI	WGTACW	2 cut(s)	126, 436
TfiI	GAWTC	3 cut(s)	666, 746, 756
Tru1I	TTAA	4 cut(s)	60, 698, 915, 1086
Tru9I	TTAA	4 cut(s)	60, 698, 915, 1086
TscAI	CASTG	1 cut(s)	1065
TseFI	GTSAC	2 cut(s)	542, 706
TseI	GCWGC	1 cut(s)	558
Tsp45I	GTSAC	2 cut(s)	542, 706
TspDTI	ATGAA	3 cut(s)	266, 585, 734
TspGWI	ACGGA	3 cut(s)	76, 335, 913
TspRI	CASTG	1 cut(s)	1065
Van91I	CCANNNNNTGG	1 cut(s)	1039
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	3 cut(s)	170, 683, 980
XspI	CTAG	2 cut(s)	330, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.