Rh4CG189100

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
40876831 .. 40878078
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG189100.1

Sequence Viewer

Length: 1248 bp
ATGCCGATGCAAGCACCACCGCCAAAGAAGGATTGGTTTTTGTACTTGATCATGAACGATCGAATATGCCGTCTAAATATTGATGAATTCTGCAAAAGGAACTCTCCAAAGCCTCAGTTTGAAGTTGTGCATGATTATTATCCTAATGGCGACTATCGTCTTGATACAACTATTCCGCAGGGAATGCAACCTATAGTTGTGGGTTCCAAAGTGTATATGCTCGGGGGTGAATCCACAAGAACATGTAACCCTGAAATGAAGGATTCTGATTCTGATGTTGATTCCGGTGGCAGTGGAAGATATAATTCTGAAAATGATCACCGTGATGACCGTGAAAGGGTACGTCGGCATGATGATTCTCGTGTGCCCAATTTGGATGTTTTTGCCTTTGATCCGAATGCTTCAGAGGGTCCAACCATCAGTCTGTGCATCGACCGTACCATTCCAAGGAAGCTAATTGATCCGAGGTTGATTGATCCAAAGACCTTGTCTGGTCCTGAAGTTTTCACCCTGGAGGACAAAATCTATGTTATGGCCAGAACATCATACTTGGGCGATGAGGAAGATATGGATCATCACCCACCCCTTTTCAAGGTTTTTGATCCCCTTCGCCAAATTTGGAAAGAGCTTCCCCGTCCTCCCCACTGTGATCATAACTCATTAAATTTATATAGTCACTCTGCTTGGGGTCACAAGATTGTAACTTGCAATTCTCGGTCGGGTTTATGCCTTTTTGACGTTCATCAAGAGAAATGGGAAAAATGGCCAGAGCAAAAGGAGGACGAAGGGAACAACCACTTTGAGTTTAGGGCTGTTGTAGAATTTGAGGGCTTTTTAATTGGTGTAATATACCATGAGCTCACTGTTTATCAGTTGGATCCGAATGGTATCCCCAAGCTGTTTCGAGACCTAGATGAGCTTCAGGGGATATTCTGTCCTTTTTTACTCGTCGGTAACTGTGTTATGGGGAAGTGTGATGGTGGCCGAATTTGGTTGGTGTATACCGGCAAGGATGTTTTCGAAAATAGGCATACACGTGTAGCTGTGTTTCAAGTTTCCATCTCCGACGATCGTGATGGCAATCCGGTCCTCTCCACTGAACTCGAGGCTGTGGAGTTTTATTTATTCCGAAATAGTTTTGATAAATTTTCCTCAGCTTTTTCCATGTGCCATCATTCAAACAATCGTGATATTGAGGAGAAAAAAATATGTGGGACAATTCTAGCACACGATCATCCTCGAGGGTGA

Protein Analysis

415

Amino Acids

47.95

Weight (kDa)

5.4

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 165 - 266 1.6e-06 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1239
AccI GTMKAC 1 cut(s) 1001
AciI CCGC 2 cut(s) 20, 176
AclWI GGATC 7 cut(s) 386, 455, 470, 579, 596, 872, 885
AcoI YGGCCR 3 cut(s) 534, 764, 982
AcsI RAATTY 6 cut(s) 86, 615, 664, 821, 987, 1145
AcuI CTGAAG 3 cut(s) 387, 519, 905
AcvI CACGTG 1 cut(s) 1037
AfaI GTAC 3 cut(s) 44, 342, 439
AfiI CCNNNNNNNGG 3 cut(s) 337, 447, 592
AflIII ACRYGT 3 cut(s) 242, 1034, 1036
AgsI TTSAA 4 cut(s) 122, 592, 1052, 1179
AjnI CCWGG 1 cut(s) 510
AluBI AGCT 7 cut(s) 454, 628, 859, 898, 919, 1043, 1157
AluI AGCT 7 cut(s) 454, 628, 859, 898, 919, 1043, 1157
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 1 cut(s) 900
AlwI GGATC 7 cut(s) 386, 455, 470, 579, 596, 872, 885
Ama87I CYCGRG 3 cut(s) 221, 1103, 1239
AoxI GGCC 3 cut(s) 534, 764, 982
ApoI RAATTY 6 cut(s) 86, 615, 664, 821, 987, 1145
ArsI GACNNNNNNTTYG 4 cut(s) 55, 87, 473, 505
AspS9I GGNCC 3 cut(s) 410, 494, 1087
AsuHPI GGTGA 4 cut(s) 239, 311, 499, 569
AsuII TTCGAA 1 cut(s) 1020
AvaI CYCGRG 3 cut(s) 221, 1103, 1239
AvaII GGWCC 3 cut(s) 410, 494, 1087
BaeGI GKGCMC 1 cut(s) 369
BalI TGGCCA 2 cut(s) 536, 766
BamHI GGATCC 1 cut(s) 877
BanII GRGCYC 1 cut(s) 861
BauI CACGAG 1 cut(s) 360
BbrPI CACGTG 1 cut(s) 1037
Bbv12I GWGCWC 1 cut(s) 861
BbvCI CCTCAGC 1 cut(s) 1153
BccI CCATC 5 cut(s) 425, 971, 1067, 1070, 1179
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 512
BciVI GTATCC 1 cut(s) 899
BclI TGATCA 3 cut(s) 48, 316, 649
BcoDI GTCTC 1 cut(s) 900
BfaI CTAG 2 cut(s) 911, 1223
BfmI CTRYAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 899
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 3 cut(s) 410, 494, 1087
BmeT110I CYCGRG 3 cut(s) 221, 1103, 1239
BmgT120I GGNCC 3 cut(s) 410, 494, 1087
BmiI GGNNCC 3 cut(s) 205, 411, 879
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 1 cut(s) 438
BoxI GACNNNNGTC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 533
Bpu10I CCTNAGC 1 cut(s) 1153
Bpu14I TTCGAA 1 cut(s) 1020
BsaAI YACGTR 1 cut(s) 1037
BsaBI GATNNNNATC 3 cut(s) 138, 570, 1080
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 3 cut(s) 446, 464, 510
BsaWI WCCGGW 2 cut(s) 284, 1084
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 447, 592
Bse118I RCCGGY 1 cut(s) 1004
Bse8I GATNNNNATC 3 cut(s) 138, 570, 1080
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 3 cut(s) 446, 464, 510
BseGI GGATG 3 cut(s) 382, 1018, 1234
BseJI GATNNNNATC 3 cut(s) 138, 570, 1080
BseLI CCNNNNNNNGG 3 cut(s) 337, 447, 592
BseMII CTCAG 2 cut(s) 128, 1167
BseRI GAGGAG 1 cut(s) 1211
BseSI GKGCMC 1 cut(s) 369
Bsh1285I CGRYCG 4 cut(s) 61, 436, 719, 1072
BshFI GGCC 3 cut(s) 536, 766, 984
BsiEI CGRYCG 4 cut(s) 61, 436, 719, 1072
BsiHKAI GWGCWC 1 cut(s) 861
BsiHKCI CYCGRG 3 cut(s) 221, 1103, 1239
BsiSI CCGG 3 cut(s) 285, 1005, 1085
BslFI GGGAC 1 cut(s) 1228
BslI CCNNNNNNNGG 3 cut(s) 337, 447, 592
BsmAI GTCTC 1 cut(s) 900
BsmFI GGGAC 1 cut(s) 1228
BsmI GAATGC 2 cut(s) 189, 403
BsnI GGCC 3 cut(s) 536, 766, 984
Bso31I GGTCTC 1 cut(s) 900
BsoBI CYCGRG 3 cut(s) 221, 1103, 1239
Bsp119I TTCGAA 1 cut(s) 1020
Bsp1286I GDGCHC 2 cut(s) 369, 861
BspACI CCGC 2 cut(s) 20, 176
BspANI GGCC 3 cut(s) 536, 766, 984
BspCNI CTCAG 2 cut(s) 127, 1166
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 205, 411, 879
BspPI GGATC 7 cut(s) 386, 455, 470, 579, 596, 872, 885
BspT104I TTCGAA 1 cut(s) 1020
BspTNI GGTCTC 1 cut(s) 900
BsrFI RCCGGY 1 cut(s) 1004
BssAI RCCGGY 1 cut(s) 1004
BssECI CCNNGG 3 cut(s) 446, 464, 510
BssNAI GTATAC 1 cut(s) 1002
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 446
Bst1107I GTATAC 1 cut(s) 1002
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 6 cut(s) 323, 332, 437, 647, 865, 959
BstAPI GCANNNNNTGC 1 cut(s) 184
BstBAI YACGTR 1 cut(s) 1037
BstBI TTCGAA 1 cut(s) 1020
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 114, 1153
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 3 cut(s) 382, 1018, 1234
BstMAI GTCTC 1 cut(s) 900
BstMCI CGRYCG 4 cut(s) 61, 436, 719, 1072
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 1 cut(s) 246
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 510
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
BstZ17I GTATAC 1 cut(s) 1002
BsuI GTATCC 1 cut(s) 899
BsuRI GGCC 3 cut(s) 536, 766, 984
BtgZI GCGATG 1 cut(s) 570
BtsCI GGATG 3 cut(s) 382, 1018, 1234
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 4 cut(s) 298, 643, 861, 1095
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 1004
Cfr13I GGNCC 3 cut(s) 410, 494, 1087
Csp6I GTAC 3 cut(s) 43, 341, 438
CviAII CATG 6 cut(s) 52, 131, 243, 350, 854, 1165
CviQI GTAC 3 cut(s) 43, 341, 438
DdeI CTNAG 2 cut(s) 114, 1153
EaeI YGGCCR 3 cut(s) 534, 764, 982
Ecl136II GAGCTC 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 861
Eco31I GGTCTC 1 cut(s) 900
Eco47I GGWCC 3 cut(s) 410, 494, 1087
Eco53kI GAGCTC 1 cut(s) 859
Eco57I CTGAAG 3 cut(s) 387, 519, 905
Eco72I CACGTG 1 cut(s) 1037
Eco88I CYCGRG 3 cut(s) 221, 1103, 1239
EcoICRI GAGCTC 1 cut(s) 859
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 446
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 6 cut(s) 55, 134, 246, 353, 857, 1168
FaqI GGGAC 1 cut(s) 1228
FatI CATG 6 cut(s) 51, 130, 242, 349, 853, 1164
FbaI TGATCA 3 cut(s) 48, 316, 649
FblI GTMKAC 1 cut(s) 1001
FokI GGATG 3 cut(s) 389, 1025, 1221
FriOI GRGCYC 1 cut(s) 861
FspBI CTAG 2 cut(s) 911, 1223
GsuI CTGGAG 1 cut(s) 533
HaeIII GGCC 3 cut(s) 536, 766, 984
HapII CCGG 3 cut(s) 285, 1005, 1085
Hin1II CATG 6 cut(s) 55, 134, 246, 353, 857, 1168
HinfI GANTC 5 cut(s) 230, 263, 269, 281, 356
HpaII CCGG 3 cut(s) 285, 1005, 1085
HphI GGTGA 4 cut(s) 239, 311, 499, 569
Hpy166II GTNNAC 1 cut(s) 1002
Hpy188I TCNGA 9 cut(s) 268, 274, 310, 396, 406, 465, 882, 1066, 1130
Hpy188III TCNNGA 7 cut(s) 52, 161, 497, 746, 905, 1073, 1187
Hpy8I GTNNAC 1 cut(s) 1002
Hpy99I CGWCG 3 cut(s) 348, 953, 1070
HpyAV CCTTC 4 cut(s) 22, 253, 617, 779
HpyCH4III ACNGT 6 cut(s) 323, 332, 437, 647, 865, 959
HpyCH4IV ACGT 3 cut(s) 343, 738, 1036
HpyCH4V TGCA 6 cut(s) 10, 93, 130, 187, 429, 708
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 114, 1153
HpySE526I ACGT 3 cut(s) 343, 738, 1036
Hsp92II CATG 6 cut(s) 55, 134, 246, 353, 857, 1168
Ksp22I TGATCA 3 cut(s) 48, 316, 649
LweI GCATC 1 cut(s) 438
MaeI CTAG 2 cut(s) 911, 1223
MaeII ACGT 3 cut(s) 343, 738, 1036
MaeIII GTNAC 5 cut(s) 245, 674, 689, 700, 953
MboII GAAGA 2 cut(s) 309, 575
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 2 cut(s) 369, 861
MlsI TGGCCA 2 cut(s) 536, 766
MluNI TGGCCA 2 cut(s) 536, 766
MmeI TCCRAC 3 cut(s) 437, 855, 1089
Mox20I TGGCCA 2 cut(s) 536, 766
MscI TGGCCA 2 cut(s) 536, 766
MseI TTAA 2 cut(s) 662, 836
MslI CAYNNNNRTG 2 cut(s) 324, 1035
Msp20I TGGCCA 2 cut(s) 536, 766
MspI CCGG 3 cut(s) 285, 1005, 1085
MspR9I CCNGG 1 cut(s) 512
Mva1269I GAATGC 2 cut(s) 189, 403
MvaI CCWGG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 184
NlaIII CATG 6 cut(s) 55, 134, 246, 353, 857, 1168
NlaIV GGNNCC 3 cut(s) 205, 411, 879
NmuCI GTSAC 2 cut(s) 674, 689
NspI RCATGY 1 cut(s) 246
NspV TTCGAA 1 cut(s) 1020
PaeR7I CTCGAG 2 cut(s) 1103, 1239
PagI TCATGA 1 cut(s) 51
PciI ACATGT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PctI GAATGC 2 cut(s) 189, 403
PfeI GAWTC 5 cut(s) 230, 263, 269, 281, 356
PflFI GACNNNGTC 1 cut(s) 487
Ple19I CGATCG 2 cut(s) 61, 1072
PmaCI CACGTG 1 cut(s) 1037
PmlI CACGTG 1 cut(s) 1037
Ppu21I YACGTR 1 cut(s) 1037
PscI ACATGT 1 cut(s) 242
PshAI GACNNNNGTC 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 510
PspCI CACGTG 1 cut(s) 1037
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 3 cut(s) 205, 411, 879
PspPI GGNCC 3 cut(s) 410, 494, 1087
PspXI VCTCGAGB 2 cut(s) 1103, 1239
PsuI RGATCY 1 cut(s) 877
PsyI GACNNNGTC 1 cut(s) 487
PvuI CGATCG 2 cut(s) 61, 1072
RsaI GTAC 3 cut(s) 44, 342, 439
RsaNI GTAC 3 cut(s) 43, 341, 438
RseI CAYNNNNRTG 2 cut(s) 324, 1035
SacI GAGCTC 1 cut(s) 861
SaqAI TTAA 2 cut(s) 662, 836
Sau96I GGNCC 3 cut(s) 410, 494, 1087
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 2 cut(s) 369, 861
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 2 cut(s) 1103, 1239
SfuI TTCGAA 1 cut(s) 1020
SinI GGWCC 3 cut(s) 410, 494, 1087
SlaI CTCGAG 2 cut(s) 1103, 1239
SmiMI CAYNNNNRTG 2 cut(s) 324, 1035
SmlI CTYRAG 2 cut(s) 1103, 1239
SmoI CTYRAG 2 cut(s) 1103, 1239
SsiI CCGC 2 cut(s) 20, 176
SspI AATATT 1 cut(s) 79
SspMI CTAG 2 cut(s) 911, 1223
SstI GAGCTC 1 cut(s) 861
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 6 cut(s) 323, 332, 437, 647, 865, 959
TaiI ACGT 3 cut(s) 346, 741, 1039
TaqI TCGA 6 cut(s) 61, 432, 904, 1020, 1104, 1240
TaqII GACCGA 1 cut(s) 705
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 5 cut(s) 230, 263, 269, 281, 356
Tru1I TTAA 2 cut(s) 662, 836
Tru9I TTAA 2 cut(s) 662, 836
TscAI CASTG 4 cut(s) 298, 650, 868, 1102
TseFI GTSAC 2 cut(s) 674, 689
Tsp45I GTSAC 2 cut(s) 674, 689
TspDTI ATGAA 4 cut(s) 68, 99, 272, 731
TspRI CASTG 4 cut(s) 298, 650, 868, 1102
Tth111I GACNNNGTC 1 cut(s) 487
VpaK11BI GGWCC 3 cut(s) 410, 494, 1087
XagI CCTNNNNNAGG 1 cut(s) 590
XapI RAATTY 6 cut(s) 86, 615, 664, 821, 987, 1145
XceI RCATGY 1 cut(s) 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XhoI CTCGAG 2 cut(s) 1103, 1239
XmiI GTMKAC 1 cut(s) 1001
XspI CTAG 2 cut(s) 911, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.