Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

40791414 .. 40793594

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG188700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2181 bp

ATGTCGATGAAGAAGGATATGTTTTTGTACTTGAATATGAACGACCGACTTTTGGGTCTAAATCTTAGAGAGTTCAGCGAAAGGTACTCTTCCAAGCCTGAGTTTGAAGTTGTTCAGGTTTTGAATTATCCGAACCGCCGCCGTCCAGGTACAAATTCCGATATCGCACAGAAAGATTGTATGACTGTGTGTAATTCCAACTTGTATATGATGAGGGTAACTGAAAATCACAGCGCGTCTGGTAATTTTGACTTGGATGTTTATTCCTTTGATTCCACTGGGGCAGATGACCGTAAATGCATCCGTCTATGTGACAAAAGTGCCTCACCTAGATTGATGTGTAGAAATCGTCCTATAGTGTTCACCCTCGATGAGAAAATCTATGTTCTGGGAGAACCATCATATTCATACAGCAGACGTGGTGATGATGTGGAGGAAGAGCCACAACTTTTTTGGGTTTTTGATCCTTTTCACGAATCCTGGAAACCACTCCCTCATCCTCTCTTCTACAATCCTGATACGTATGGTGTGTATGTGTATTATGATGTTTCTTATGGTCACAAGCTTTTTATTCGTACATACGATCAAAGACATGTTTTTGACGCTCACCAAGAGAGATGGGAGGGTTCAGAAAGCCGTCGTGTTTATGATGAGCATTACTTTGAATTTAATGCTATTGTAGAATTTGGTGAAGGCTTTTTAATTGCTGTGCCTCAGAGGACGAGGAATGAACAGATGAGCCATGAGCTTGTTGCTTATAAGTTGGATGTGAACGGGATCCCGCAGCCGCATCAGGTGCTACACGAGCTTACCAGGATGTTTTCATGGCCTCCTTTGTTAAGTGACCCTCAAGTTTTTTTGGGTAAATGTGATGATAACCTTATTTGGTTGGTGTATTGCGGCAAGGATAATGTCCAGGGATTTTCTTGTATAGGCGTCGCAGTGTTTCGAGTTTCTATGTCATATGACCATGCTGGCAAAGTATTGTTTTTGGTAGATATTGAGGCTGCAGATTTTATCGATTCAAATAGTTATGAGGTTCAAGGCGCCAAGGAGACCAATCTAGTTTACTCAGCTTCTGCCATGTGCCATGATAATTTGAAGACCAAGGATTGGTTTTTGTATTTGGATATGGGGGATCGACTATGCAGTATAAATATTAGCGAATTCTGCAAAAGGAAGAGCTCTTTCATGTCTAAGTTCGGAGTTGTACATGTTTTATATCCAGGAGGTCGTCCTAGTACAATTCCCAGTAGAATAAGACATATAACTGTGGGATCAAAAGTGTATCTGGTTGGCGGTCAAAGACTCGATCGAAGAATCCATAGTGATGCACATGGGAGATGTTTTGCAATGCCTAACTTGGATATTTATGCATTTAATCACAATTATGAAACAGAAGAGGGTCCTTCTATCACCCTCTGCCAATGTGAAGGTTCCATTCCCAGGTTGATTGATCCACGAACCAAAACCATTCCTATCATGATTGCTCTTGAGGATAAGATCTATGTTCTGGCAAAAAGACCATACCTGGGGGACGAAGAAGAACATAATGATGATGATCAGCCACCACTTTTTAAGGTTTTTGATCCCCTCAAACAATCCTGGAAACACCTCCCTCATCCCCCCTGCTATAATATATCATTACGTGACACCGAGCCTTATGTGTGTAACTACTTCTCTTGGGGCCACAAGCTCCTTATTCGTACCGAGGCAAAGAAAAAAAAGAAGAATCCCAGGACATACATTTTTGACACTCACCAAGAGAAATGGGAGGATGCCAAGAATATCAGTGCAATCCTTGATGAGGGTTTTAGGGTTGTGGCAGAATTCCAGGGATTTTTAATTGGCATGCCTTATAAGCGCCAAGAACTTGTTGCTTACCATTTGGATTCTAATGGGATTCCCAAAATCTCGAAGGTGCTACACGAGCTGCAAGAGATATTTAGCTCTTGTTTACTTGTCTCCGACTGTTTTCTTGGTAAATATGATGGTGACCGTATGTGGCTGGTGTATTCTGCGCAGGATAGTATGAAATTTTGGCATGCGCGTGTAGGGATGTTTCGTGTTTTCATCTCTAATGATTTTGATGGAAATCAAGTCCTCTGTGCAGATCTTGAGGCTGCACAATTTTTTCAGTTTGATAGGTTTATTAGCTCGGCTTTCACTTATGCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

726

Amino Acids

84.44

Weight (kDa)

5.94

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	113 - 212	5.8e-08	FKB95, Kelch-repeats domain
Kelch_FKB95	PF25210	456 - 685	2e-06	FKB95, Kelch-repeats domain
DUF1668	PF07893	481 - 594	5.1e-09	Protein of unknown function (DUF1668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	759, 1860
AasI	GACNNNNNNGTC	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	2022
AccB1I	GGYRCC	1 cut(s)	1046
AccB7I	CCANNNNNTGG	1 cut(s)	1113
AccII	CGCG	2 cut(s)	236, 2050
AciI	CCGC	6 cut(s)	136, 139, 782, 788, 900, 1299
AclWI	GGATC	7 cut(s)	458, 772, 785, 1146, 1285, 1451, 1583
AcsI	RAATTY	6 cut(s)	154, 665, 683, 1166, 1829, 2036
AcyI	GRCGYC	2 cut(s)	936, 1047
AfaI	GTAC	7 cut(s)	29, 86, 151, 577, 1212, 1243, 1708
AfiI	CCNNNNNNNGG	5 cut(s)	52, 1113, 1446, 1532, 1807
AflIII	ACRYGT	2 cut(s)	592, 1213
AgsI	TTSAA	7 cut(s)	34, 107, 124, 665, 1026, 1043, 1102
AjiI	CACGTC	1 cut(s)	419
AluBI	AGCT	9 cut(s)	565, 748, 808, 1076, 1185, 1696, 1933, 1950, 2157
AluI	AGCT	9 cut(s)	565, 748, 808, 1076, 1185, 1696, 1933, 1950, 2157
Alw21I	GWGCWC	1 cut(s)	1187
Alw26I	GTCTC	2 cut(s)	1049, 1969
AlwI	GGATC	7 cut(s)	458, 772, 785, 1146, 1285, 1451, 1583
AlwNI	CAGNNNCTG	1 cut(s)	1079
AoxI	GGCC	2 cut(s)	827, 1687
ApeKI	GCWGC	4 cut(s)	784, 1007, 1933, 2123
ApoI	RAATTY	6 cut(s)	154, 665, 683, 1166, 1829, 2036
Asp700I	GAANNNNTTC	1 cut(s)	111
AspLEI	GCGC	5 cut(s)	236, 1049, 1866, 2023, 2050
AspS9I	GGNCC	2 cut(s)	1406, 1687
AsuHPI	GGTGA	8 cut(s)	318, 355, 434, 599, 701, 1408, 1751, 2006
AvaII	GGWCC	1 cut(s)	1406
BamHI	GGATCC	1 cut(s)	777
BanI	GGYRCC	1 cut(s)	1046
BanII	GRGCYC	1 cut(s)	1187
BauI	CACGAG	2 cut(s)	803, 1928
BbsI	GAAGAC	1 cut(s)	1109
Bbv12I	GWGCWC	1 cut(s)	1187
BbvI	GCAGC	4 cut(s)	796, 994, 1920, 2110
BccI	CCATC	4 cut(s)	406, 612, 1985, 2084
BceAI	ACGGC	2 cut(s)	126, 621
BclI	TGATCA	1 cut(s)	1561
BcoDI	GTCTC	2 cut(s)	1049, 1969
BfaI	CTAG	3 cut(s)	330, 1064, 1239
BfmI	CTRYAG	2 cut(s)	354, 1008
BfoI	RGCGCY	2 cut(s)	1050, 1867
BglII	AGATCT	2 cut(s)	1503, 2113
BisI	GCNGC	7 cut(s)	139, 785, 788, 901, 1008, 1934, 2124
BlsI	GCNGC	7 cut(s)	140, 786, 789, 902, 1009, 1935, 2125
Bme18I	GGWCC	1 cut(s)	1406
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	1406, 1687
BmiI	GGNNCC	5 cut(s)	779, 1048, 1407, 1438, 1688
BmrI	ACTGGG	2 cut(s)	288, 1245
BmsI	GCATC	4 cut(s)	309, 799, 1321, 1768
BmuI	ACTGGG	2 cut(s)	288, 1245
BpiI	GAAGAC	1 cut(s)	1109
BpuEI	CTTGAG	3 cut(s)	834, 1514, 2138
Bsa29I	ATCGAT	1 cut(s)	1020
BsaAI	YACGTR	2 cut(s)	522, 1649
BsaBI	GATNNNNATC	2 cut(s)	1560, 2094
BsaHI	GRCGYC	2 cut(s)	936, 1047
BsaI	GGTCTC	1 cut(s)	1049
BsaJI	CCNNGG	8 cut(s)	916, 1050, 1107, 1445, 1531, 1710, 1736, 1834
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 1113, 1446, 1532, 1807
Bse1I	ACTGG	2 cut(s)	283, 1251
Bse3DI	GCAATG	1 cut(s)	1359
Bse8I	GATNNNNATC	2 cut(s)	1560, 2094
BseCI	ATCGAT	1 cut(s)	1020
BseDI	CCNNGG	8 cut(s)	916, 1050, 1107, 1445, 1531, 1710, 1736, 1834
BseGI	GGATG	8 cut(s)	262, 300, 496, 772, 822, 1621, 1783, 2064
BseJI	GATNNNNATC	2 cut(s)	1560, 2094
BseLI	CCNNNNNNNGG	5 cut(s)	52, 1113, 1446, 1532, 1807
BseMI	GCAATG	1 cut(s)	1359
BseMII	CTCAG	3 cut(s)	90, 728, 1086
BseNI	ACTGG	2 cut(s)	283, 1251
BseXI	GCAGC	4 cut(s)	796, 994, 1920, 2110
BsgI	GTGCAG	2 cut(s)	2109, 2130
Bsh1236I	CGCG	2 cut(s)	236, 2050
Bsh1285I	CGRYCG	2 cut(s)	46, 1315
BshFI	GGCC	2 cut(s)	829, 1689
BshNI	GGYRCC	1 cut(s)	1046
BshVI	ATCGAT	1 cut(s)	1020
BsiEI	CGRYCG	2 cut(s)	46, 1315
BsiHKAI	GWGCWC	1 cut(s)	1187
BslFI	GGGAC	1 cut(s)	1550
BslI	CCNNNNNNNGG	5 cut(s)	52, 1113, 1446, 1532, 1807
BsmAI	GTCTC	2 cut(s)	1049, 1969
BsmFI	GGGAC	1 cut(s)	1550
BsnI	GGCC	2 cut(s)	829, 1689
Bso31I	GGTCTC	1 cut(s)	1049
Bsp1286I	GDGCHC	1 cut(s)	1187
Bsp1407I	TGTACA	1 cut(s)	1210
BspACI	CCGC	6 cut(s)	136, 139, 782, 788, 900, 1299
BspANI	GGCC	2 cut(s)	829, 1689
BspCNI	CTCAG	3 cut(s)	91, 727, 1085
BspDI	ATCGAT	1 cut(s)	1020
BspFNI	CGCG	2 cut(s)	236, 2050
BspHI	TCATGA	1 cut(s)	1482
BspLI	GGNNCC	5 cut(s)	779, 1048, 1407, 1438, 1688
BspMAI	CTGCAG	1 cut(s)	1012
BspPI	GGATC	7 cut(s)	458, 772, 785, 1146, 1285, 1451, 1583
BspQI	GCTCTTC	2 cut(s)	432, 1175
BspT107I	GGYRCC	1 cut(s)	1046
BspTNI	GGTCTC	1 cut(s)	1049
BsrDI	GCAATG	1 cut(s)	1359
BsrGI	TGTACA	1 cut(s)	1210
BsrI	ACTGG	2 cut(s)	283, 1251
BssECI	CCNNGG	8 cut(s)	916, 1050, 1107, 1445, 1531, 1710, 1736, 1834
BssNI	GRCGYC	2 cut(s)	936, 1047
BssSI	CACGAG	2 cut(s)	803, 1928
BssT1I	CCWWGG	2 cut(s)	1050, 1107
Bst2BI	CACGAG	2 cut(s)	803, 1928
Bst4CI	ACNGT	5 cut(s)	187, 293, 1273, 1973, 2000
Bst6I	CTCTTC	5 cut(s)	94, 432, 509, 1175, 1395
BstACI	GRCGYC	2 cut(s)	936, 1047
BstAPI	GCANNNNNTGC	1 cut(s)	796
BstAUI	TGTACA	1 cut(s)	1210
BstBAI	YACGTR	2 cut(s)	522, 1649
BstC8I	GCNNGC	3 cut(s)	976, 1853, 2046
BstDEI	CTNAG	5 cut(s)	65, 99, 714, 1072, 1197
BstEII	GGTNACC	1 cut(s)	1994
BstENI	CCTNNNNNAGG	1 cut(s)	1805
BstF5I	GGATG	8 cut(s)	262, 300, 496, 772, 822, 1621, 1783, 2064
BstFNI	CGCG	2 cut(s)	236, 2050
BstH2I	RGCGCY	2 cut(s)	1050, 1867
BstHHI	GCGC	5 cut(s)	236, 1049, 1866, 2023, 2050
BstMAI	GTCTC	2 cut(s)	1049, 1969
BstMCI	CGRYCG	2 cut(s)	46, 1315
BstMWI	GCNNNNNNNGC	5 cut(s)	796, 805, 1170, 1861, 1930
BstNSI	RCATGY	4 cut(s)	596, 1217, 1855, 2048
BstPI	GGTNACC	1 cut(s)	1994
BstSFI	CTRYAG	2 cut(s)	354, 1008
BstSNI	TACGTA	1 cut(s)	522
BstUI	CGCG	2 cut(s)	236, 2050
BstV1I	GCAGC	4 cut(s)	796, 994, 1920, 2110
BstV2I	GAAGAC	1 cut(s)	1109
BstX2I	RGATCY	3 cut(s)	777, 1503, 2113
BstYI	RGATCY	3 cut(s)	777, 1503, 2113
Bsu15I	ATCGAT	1 cut(s)	1020
BsuRI	GGCC	2 cut(s)	829, 1689
BsuTUI	ATCGAT	1 cut(s)	1020
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	8 cut(s)	262, 300, 496, 772, 822, 1621, 1783, 2064
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	3 cut(s)	276, 948, 1798
Cac8I	GCNNGC	3 cut(s)	976, 1853, 2046
CaiI	CAGNNNCTG	1 cut(s)	1079
CciI	TCATGA	1 cut(s)	1482
CfoI	GCGC	5 cut(s)	236, 1049, 1866, 2023, 2050
Cfr13I	GGNCC	2 cut(s)	1406, 1687
ClaI	ATCGAT	1 cut(s)	1020
CseI	GACGC	3 cut(s)	225, 611, 925
Csp6I	GTAC	7 cut(s)	28, 85, 150, 576, 1211, 1242, 1707
CviQI	GTAC	7 cut(s)	28, 85, 150, 576, 1211, 1242, 1707
DdeI	CTNAG	5 cut(s)	65, 99, 714, 1072, 1197
DinI	GGCGCC	1 cut(s)	1048
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
Eam1104I	CTCTTC	5 cut(s)	94, 432, 509, 1175, 1395
EarI	CTCTTC	5 cut(s)	94, 432, 509, 1175, 1395
Ecl136II	GAGCTC	1 cut(s)	1185
Eco105I	TACGTA	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	1050, 1107
Eco24I	GRGCYC	1 cut(s)	1187
Eco31I	GGTCTC	1 cut(s)	1049
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	1406
Eco53kI	GAGCTC	1 cut(s)	1185
Eco91I	GGTNACC	1 cut(s)	1994
EcoICRI	GAGCTC	1 cut(s)	1185
EcoNI	CCTNNNNNAGG	1 cut(s)	1805
EcoO109I	RGGNCCY	1 cut(s)	1406
EcoO65I	GGTNACC	1 cut(s)	1994
EcoRI	GAATTC	2 cut(s)	1166, 1829
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	1050, 1107
EcoT22I	ATGCAT	2 cut(s)	302, 1378
EcoT38I	GRGCYC	1 cut(s)	1187
EgeI	GGCGCC	1 cut(s)	1048
EheI	GGCGCC	1 cut(s)	1048
ErhI	CCWWGG	2 cut(s)	1050, 1107
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FaqI	GGGAC	1 cut(s)	1550
FauI	CCCGC	1 cut(s)	789
FauNDI	CATATG	1 cut(s)	964
FbaI	TGATCA	1 cut(s)	1561
Fnu4HI	GCNGC	7 cut(s)	139, 785, 788, 901, 1008, 1934, 2124
FokI	GGATG	8 cut(s)	269, 287, 483, 779, 829, 1608, 1790, 2071
FriOI	GRGCYC	1 cut(s)	1187
Fsp4HI	GCNGC	7 cut(s)	139, 785, 788, 901, 1008, 1934, 2124
FspBI	CTAG	3 cut(s)	330, 1064, 1239
FspI	TGCGCA	1 cut(s)	2022
GlaI	GCGC	5 cut(s)	235, 1048, 1865, 2022, 2049
GluI	GCNGC	7 cut(s)	139, 785, 788, 901, 1008, 1934, 2124
HaeII	RGCGCY	2 cut(s)	1050, 1867
HaeIII	GGCC	2 cut(s)	829, 1689
HgaI	GACGC	3 cut(s)	225, 611, 925
HhaI	GCGC	5 cut(s)	236, 1049, 1866, 2023, 2050
Hin1I	GRCGYC	2 cut(s)	936, 1047
Hin6I	GCGC	5 cut(s)	234, 1047, 1864, 2021, 2048
HinP1I	GCGC	5 cut(s)	234, 1047, 1864, 2021, 2048
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	8 cut(s)	272, 476, 1022, 1308, 1320, 1732, 1892, 1903
HphI	GGTGA	8 cut(s)	318, 355, 434, 599, 701, 1408, 1751, 2006
Hpy166II	GTNNAC	4 cut(s)	363, 772, 1069, 1958
Hpy188I	TCNGA	6 cut(s)	132, 160, 631, 717, 1205, 1969
Hpy188III	TCNNGA	6 cut(s)	473, 515, 1483, 1493, 1915, 2117
Hpy8I	GTNNAC	4 cut(s)	363, 772, 1069, 1958
Hpy99I	CGWCG	2 cut(s)	642, 941
HpyAV	CCTTC	5 cut(s)	7, 686, 1419, 1427, 1912
HpyCH4III	ACNGT	5 cut(s)	187, 293, 1273, 1973, 2000
HpyCH4IV	ACGT	3 cut(s)	418, 521, 1648
HpyF10VI	GCNNNNNNNGC	5 cut(s)	796, 805, 1170, 1861, 1930
HpyF3I	CTNAG	5 cut(s)	65, 99, 714, 1072, 1197
HpySE526I	ACGT	3 cut(s)	418, 521, 1648
Hsp92I	GRCGYC	2 cut(s)	936, 1047
HspAI	GCGC	5 cut(s)	234, 1047, 1864, 2021, 2048
KasI	GGCGCC	1 cut(s)	1046
Ksp22I	TGATCA	1 cut(s)	1561
LguI	GCTCTTC	2 cut(s)	432, 1175
LmnI	GCTCC	1 cut(s)	1701
Lsp1109I	GCAGC	4 cut(s)	796, 994, 1920, 2110
LweI	GCATC	4 cut(s)	309, 799, 1321, 1768
MaeI	CTAG	3 cut(s)	330, 1064, 1239
MaeII	ACGT	3 cut(s)	418, 521, 1648
MaeIII	GTNAC	7 cut(s)	217, 311, 557, 842, 1649, 1670, 1994
MflI	RGATCY	3 cut(s)	777, 1503, 2113
MhlI	GDGCHC	1 cut(s)	1187
Mly113I	GGCGCC	1 cut(s)	1047
MlyI	GAGTC	1 cut(s)	1302
MmeI	TCCRAC	3 cut(s)	222, 744, 1992
Mph1103I	ATGCAT	2 cut(s)	302, 1378
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	6 cut(s)	669, 701, 839, 1380, 1578, 1844
MslI	CAYNNNNRTG	4 cut(s)	1329, 1389, 1554, 2049
MvnI	CGCG	2 cut(s)	236, 2050
MwoI	GCNNNNNNNGC	5 cut(s)	796, 805, 1170, 1861, 1930
NarI	GGCGCC	1 cut(s)	1047
NdeI	CATATG	1 cut(s)	964
NlaIV	GGNNCC	5 cut(s)	779, 1048, 1407, 1438, 1688
NmeAIII	GCCGAG	1 cut(s)	2138
NmuCI	GTSAC	5 cut(s)	311, 557, 842, 1649, 1994
NsbI	TGCGCA	1 cut(s)	2022
NsiI	ATGCAT	2 cut(s)	302, 1378
NspI	RCATGY	4 cut(s)	596, 1217, 1855, 2048
PaeI	GCATGC	2 cut(s)	1855, 2048
PagI	TCATGA	1 cut(s)	1482
PciI	ACATGT	2 cut(s)	592, 1213
PciSI	GCTCTTC	2 cut(s)	432, 1175
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	7 cut(s)	272, 476, 1022, 1320, 1732, 1892, 1903
PflMI	CCANNNNNTGG	1 cut(s)	1113
PfoI	TCCNGGA	3 cut(s)	479, 1225, 1604
PkrI	GCNGC	7 cut(s)	140, 786, 789, 902, 1009, 1935, 2125
Ple19I	CGATCG	1 cut(s)	1315
PleI	GAGTC	1 cut(s)	1302
PluTI	GGCGCC	1 cut(s)	1050
PpsI	GAGTC	1 cut(s)	1302
Ppu21I	YACGTR	2 cut(s)	522, 1649
PpuMI	RGGWCCY	1 cut(s)	1406
PscI	ACATGT	2 cut(s)	592, 1213
PsiI	TTATAA	2 cut(s)	759, 1860
Psp124BI	GAGCTC	1 cut(s)	1187
Psp5II	RGGWCCY	1 cut(s)	1406
PspEI	GGTNACC	1 cut(s)	1994
PspN4I	GGNNCC	5 cut(s)	779, 1048, 1407, 1438, 1688
PspPI	GGNCC	2 cut(s)	1406, 1687
PspPPI	RGGWCCY	1 cut(s)	1406
PstI	CTGCAG	1 cut(s)	1012
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	3 cut(s)	777, 1503, 2113
PvuI	CGATCG	1 cut(s)	1315
RsaI	GTAC	7 cut(s)	29, 86, 151, 577, 1212, 1243, 1708
RsaNI	GTAC	7 cut(s)	28, 85, 150, 576, 1211, 1242, 1707
RseI	CAYNNNNRTG	4 cut(s)	1329, 1389, 1554, 2049
SacI	GAGCTC	1 cut(s)	1187
SapI	GCTCTTC	2 cut(s)	432, 1175
SaqAI	TTAA	6 cut(s)	669, 701, 839, 1380, 1578, 1844
SatI	GCNGC	7 cut(s)	139, 785, 788, 901, 1008, 1934, 2124
Sau96I	GGNCC	2 cut(s)	1406, 1687
SchI	GAGTC	1 cut(s)	1302
SduI	GDGCHC	1 cut(s)	1187
SfaNI	GCATC	4 cut(s)	309, 799, 1321, 1768
SfcI	CTRYAG	2 cut(s)	354, 1008
SfoI	GGCGCC	1 cut(s)	1048
SinI	GGWCC	1 cut(s)	1406
SmiMI	CAYNNNNRTG	4 cut(s)	1329, 1389, 1554, 2049
SmlI	CTYRAG	3 cut(s)	849, 1493, 2117
SmoI	CTYRAG	3 cut(s)	849, 1493, 2117
SnaBI	TACGTA	1 cut(s)	522
SphI	GCATGC	2 cut(s)	1855, 2048
SsiI	CCGC	6 cut(s)	136, 139, 782, 788, 900, 1299
SspDI	GGCGCC	1 cut(s)	1046
SspI	AATATT	1 cut(s)	1159
SspMI	CTAG	3 cut(s)	330, 1064, 1239
SstI	GAGCTC	1 cut(s)	1187
StyI	CCWWGG	2 cut(s)	1050, 1107
TaaI	ACNGT	5 cut(s)	187, 293, 1273, 1973, 2000
TaiI	ACGT	3 cut(s)	421, 524, 1651
TaqI	TCGA	8 cut(s)	5, 369, 949, 1020, 1141, 1311, 1315, 1916
TaqII	GACCGA	1 cut(s)	60
TatI	WGTACW	3 cut(s)	27, 1210, 1241
TauI	GCSGC	3 cut(s)	141, 790, 903
TfiI	GAWTC	7 cut(s)	272, 476, 1022, 1320, 1732, 1892, 1903
Tru1I	TTAA	6 cut(s)	669, 701, 839, 1380, 1578, 1844
Tru9I	TTAA	6 cut(s)	669, 701, 839, 1380, 1578, 1844
TscAI	CASTG	3 cut(s)	283, 948, 1798
TseFI	GTSAC	5 cut(s)	311, 557, 842, 1649, 1994
TseI	GCWGC	4 cut(s)	784, 1007, 1933, 2123
Tsp45I	GTSAC	5 cut(s)	311, 557, 842, 1649, 1994
TspDTI	ATGAA	9 cut(s)	23, 53, 396, 744, 813, 1180, 1407, 2048, 2062
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	283, 948, 1798
Van91I	CCANNNNNTGG	1 cut(s)	1113
VpaK11BI	GGWCC	1 cut(s)	1406
XagI	CCTNNNNNAGG	1 cut(s)	1805
XapI	RAATTY	6 cut(s)	154, 665, 683, 1166, 1829, 2036
XceI	RCATGY	4 cut(s)	596, 1217, 1855, 2048
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	3 cut(s)	330, 1064, 1239
Zsp2I	ATGCAT	2 cut(s)	302, 1378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.