Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

81713796 .. 81714755

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036540

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTGAATTCTCAAAACAAGAATGAGGGCTATTTTTTTGATCCGGCTAACCCAGCTGGTCCATGCATCCGCCGCTTGGAGCATGCCGCCATTCCGAGAGTAGTTGATCCCAGATTGTTCATGTCCGGAGAGAATGTCATCGTCTGCACCATTGAGAACAGAATTTATGTTCTTGCCAAATATGCTCATGAAGTTGAGGATAATCATGAGCAGCCTCCCCTCTTTAAGAAGATCGCAGCTTGTCGCTTATCAGTTGGATTCGAATGGAAACCCCAAGCTGTATCGGGTGCTACACTGCTACATGAGCTTCAAGGCGTATTCTGTCCTATTCTAAATACCTATTCGTCCAAGTGTTACTTCGGTGAATTTAACGGTGGCCGTATATGGTTTGTGCAAACAAATGGGATAATGGGAACATTTGATAATTATGATTCTGATGATTATACACGTATAGCGGTGTTTCAAGTTTCCATCTCGAAGGACCTTGCTGGTACTCCTATTCTCTCGGCACATATTGAGGCTGCCGAATTTTATGAAGATTTAAACATCTCCACAGCTTTTGTCATGCGCCATCATTTGAATAAGCATGATACCAGGAAGAAAGAGTTGTGTGGAAACATTGTACCACATACATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.94

Weight (kDa)

6.13

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	4 cut(s)	70, 73, 87, 455
AclWI	GGATC	2 cut(s)	35, 101
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	4 cut(s)	7, 162, 365, 527
AfaI	GTAC	2 cut(s)	493, 624
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	2 cut(s)	446, 632
AgsI	TTSAA	3 cut(s)	311, 464, 580
AjnI	CCWGG	1 cut(s)	593
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	5 cut(s)	56, 239, 278, 307, 557
AluI	AGCT	5 cut(s)	56, 239, 278, 307, 557
AlwI	GGATC	2 cut(s)	35, 101
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	3 cut(s)	211, 236, 521
ApoI	RAATTY	4 cut(s)	7, 162, 365, 527
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	2 cut(s)	59, 481
AsuHPI	GGTGA	2 cut(s)	16, 374
AsuII	TTCGAA	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	59, 481
BbvI	GCAGC	3 cut(s)	223, 248, 508
BccI	CCATC	2 cut(s)	479, 579
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	595
BisI	GCNGC	5 cut(s)	73, 87, 212, 237, 522
BlsI	GCNGC	5 cut(s)	74, 88, 213, 238, 523
Bme1390I	CCNGG	1 cut(s)	595
Bme18I	GGWCC	2 cut(s)	59, 481
BmgT120I	GGNCC	2 cut(s)	59, 481
BmrFI	CCNGG	1 cut(s)	595
BmsI	GCATC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	449
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	595
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseXI	GCAGC	3 cut(s)	223, 248, 508
BseYI	CCCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	44, 126
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	1 cut(s)	378
Bsp119I	TTCGAA	1 cut(s)	261
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	40, 106, 231
BspACI	CCGC	4 cut(s)	70, 73, 87, 455
BspANI	GGCC	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	125
BspHI	TCATGA	2 cut(s)	187, 205
BspPI	GGATC	2 cut(s)	35, 101
BspT104I	TTCGAA	1 cut(s)	261
BssMI	GATC	3 cut(s)	40, 106, 231
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	449
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	3 cut(s)	43, 109, 234
BstMBI	GATC	3 cut(s)	40, 106, 231
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 72, 182, 304
BstNI	CCWGG	1 cut(s)	595
BstNSI	RCATGY	2 cut(s)	86, 636
BstSCI	CCNGG	1 cut(s)	593
BstV1I	GCAGC	3 cut(s)	223, 248, 508
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	2 cut(s)	187, 205
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	2 cut(s)	59, 481
Csp6I	GTAC	2 cut(s)	492, 623
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	9 cut(s)	63, 83, 121, 188, 206, 302, 565, 587, 633
CviQI	GTAC	2 cut(s)	492, 623
DpnI	GATC	3 cut(s)	42, 108, 233
DpnII	GATC	3 cut(s)	40, 106, 231
DraI	TTTAAA	1 cut(s)	543
EaeI	YGGCCR	1 cut(s)	376
EciI	GGCGGA	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	59, 481
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	593
EcoT22I	ATGCAT	1 cut(s)	68
FaeI	CATG	9 cut(s)	66, 86, 124, 191, 209, 305, 568, 590, 636
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	9 cut(s)	62, 82, 120, 187, 205, 301, 564, 586, 632
Fnu4HI	GCNGC	5 cut(s)	73, 87, 212, 237, 522
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	5 cut(s)	73, 87, 212, 237, 522
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	5 cut(s)	73, 87, 212, 237, 522
GsaI	CCCAGC	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	2 cut(s)	44, 126
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	9 cut(s)	66, 86, 124, 191, 209, 305, 568, 590, 636
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HinfI	GANTC	2 cut(s)	258, 431
HpaII	CCGG	2 cut(s)	44, 126
HphI	GGTGA	2 cut(s)	16, 374
Hpy188I	TCNGA	2 cut(s)	96, 436
Hpy188III	TCNNGA	4 cut(s)	126, 188, 206, 475
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	3 cut(s)	66, 147, 394
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 72, 182, 304
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	9 cut(s)	66, 86, 124, 191, 209, 305, 568, 590, 636
HspAI	GCGC	1 cut(s)	568
Kpn2I	TCCGGA	1 cut(s)	125
Kzo9I	GATC	3 cut(s)	40, 106, 231
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	8 cut(s)	42, 57, 66, 124, 139, 474, 580, 607
Lsp1109I	GCAGC	3 cut(s)	223, 248, 508
LweI	GCATC	1 cut(s)	75
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	3 cut(s)	42, 108, 233
MboI	GATC	3 cut(s)	40, 106, 231
MboII	GAAGA	3 cut(s)	241, 548, 610
MluCI	AATT	5 cut(s)	7, 162, 365, 424, 527
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	19, 190, 225, 230, 511
Mph1103I	ATGCAT	1 cut(s)	68
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	4 cut(s)	225, 369, 542, 637
MslI	CAYNNNNRTG	1 cut(s)	631
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	44, 126
MspR9I	CCNGG	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	4 cut(s)	53, 72, 182, 304
NdeII	GATC	3 cut(s)	40, 106, 231
NlaIII	CATG	9 cut(s)	66, 86, 124, 191, 209, 305, 568, 590, 636
NmeAIII	GCCGAG	1 cut(s)	485
NsiI	ATGCAT	1 cut(s)	68
NspI	RCATGY	2 cut(s)	86, 636
NspV	TTCGAA	1 cut(s)	261
PaeI	GCATGC	1 cut(s)	86
PagI	TCATGA	2 cut(s)	187, 205
PciI	ACATGT	1 cut(s)	632
PfeI	GAWTC	2 cut(s)	258, 431
PkrI	GCNGC	5 cut(s)	74, 88, 213, 238, 523
Ppu21I	YACGTR	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	481
PscI	ACATGT	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	593
PspPI	GGNCC	2 cut(s)	59, 481
PspPPI	RGGWCCY	1 cut(s)	481
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	493, 624
RsaNI	GTAC	2 cut(s)	492, 623
RseI	CAYNNNNRTG	1 cut(s)	631
SaqAI	TTAA	4 cut(s)	225, 369, 542, 637
SatI	GCNGC	5 cut(s)	73, 87, 212, 237, 522
Sau3AI	GATC	3 cut(s)	40, 106, 231
Sau96I	GGNCC	2 cut(s)	59, 481
ScrFI	CCNGG	1 cut(s)	595
SetI	ASST	8 cut(s)	58, 241, 280, 309, 341, 451, 486, 559
SfaNI	GCATC	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	2 cut(s)	59, 481
SmiMI	CAYNNNNRTG	1 cut(s)	631
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	5 cut(s)	7, 162, 365, 424, 527
SsiI	CCGC	4 cut(s)	70, 73, 87, 455
StyD4I	CCNGG	1 cut(s)	593
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	2 cut(s)	261, 476
TasI	AATT	5 cut(s)	7, 162, 365, 424, 527
TauI	GCSGC	2 cut(s)	75, 89
TfiI	GAWTC	2 cut(s)	258, 431
Tru1I	TTAA	4 cut(s)	225, 369, 542, 637
Tru9I	TTAA	4 cut(s)	225, 369, 542, 637
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	3 cut(s)	211, 236, 521
TspDTI	ATGAA	3 cut(s)	109, 204, 549
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	59, 481
XapI	RAATTY	4 cut(s)	7, 162, 365, 527
XceI	RCATGY	2 cut(s)	86, 636
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.