RLG00000037046

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
87829188 .. 87830942
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037046

Sequence Viewer

Length: 1263 bp
ATGAAGTACCTGTCCGGCAGCCAGCACAGGGACAACGCGGTGATGCTGGCGCTACCCTTGGCTGCTAGGAAATATTTTGGTGGTGTAGATAGACAAGTTTTGAAGACAGTGACGATGCAATCGTCGCCAGATATCGTTGATCGACTATGCGGTCTAAGTATCAGCGATCGTTTGTCTCCTGAGCCTGAGGTTGAAATCGAAGCGCCGATGAAGGATTGGTTTTTGTACTTGATGATGGACATGCATATATCCCGTCTGAATATTGACGAATTCTGCAAAAGGAGCTCTGAGAAGCCTGAGTTGGAATTGTTGTATGATTACGATGGTGATTCAACTAAACTTCCTTTCGACATGGAACATACAAGAGTGGGTTCTAAAGTGCACATGGTTAACTGTAACTACAATTACGGGGATGAATTTTATGATTCTGACGAGGAAGAATTTGAGGATGGAGTGGGTTATTGCTTTGATCCCACTGATCCAGACGGTCCATCCATTCGTCAATGCGACCACTGTAATGATGATGATTTGCTTCACGAGGCCGCTTTCATCCTCGAAGACAAATTTTATTCTTTTTATCCCTTTAAGGTTTTTGATCCTCTTCACCAACTCTGGAAACGACTTCTGCCTGACCCACCGTATTTTAAAGAAGTTTCTGCTCTAGGCCACAAGATCGTGTTTAGTACTAGGAAGCAGTCATGCCTGTTCGACACTCGGGAAGAGAAATGGGAAGATTGGCCAAAGAGAAATAAAGAAATTGAAAAATTCGTGGACGGTAAGTATCTATTTGATCATGATGACATCCGGACTACCCATAAGATGCAAGCTGCTGTAGAACATGAGGGATTTTTAATTGCTCATGTTGGATATAAACTTGCTGCTTTTCGGTGGGATTCAAATGGAATCCCAAAGCTGTATCGGGTGCTGAATGAGCTTGACGGGGTATTCCATCCTGGACTACACATTAAGGGTAATAATGCGCATGCAATGGGAAAATGTGATGGTGGCCGTATGTGGTTGGTGTATGTTGGATACGATCTCTTGCATTTTTGGCATACGCGTATAGGAGTGTTTCGAGTTTCCATCTCAAACGACCTTGATGGGAATCCAGTCCTCTCTGCCCAAGTTGAGGCTGCGGAATTGTTTTCTTCTGAGGAATCAGAACGTATCAAATCAGCTTTCGCCTTGTGCCATCAGCCGAACCAGTATGAGAACAAAATCAGAGTTATTCGTCATCCTTCCCAACGCACTGTTGCTTCATGA

Protein Analysis

421

Amino Acids

48.69

Weight (kDa)

5.39

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 150
Acc16I TGCGCA 1 cut(s) 981
AccII CGCG 2 cut(s) 38, 1060
AccIII TCCGGA 1 cut(s) 804
AciI CCGC 4 cut(s) 38, 150, 543, 1136
AclWI GGATC 3 cut(s) 464, 473, 590
AcoI YGGCCR 2 cut(s) 737, 1006
AcsI RAATTY 5 cut(s) 269, 416, 440, 563, 764
AfaI GTAC 3 cut(s) 8, 227, 685
AfiI CCNNNNNNNGG 2 cut(s) 28, 1129
AflIII ACRYGT 1 cut(s) 1058
AgsI TTSAA 5 cut(s) 103, 194, 333, 761, 897
AjnI CCWGG 1 cut(s) 952
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 5 cut(s) 285, 827, 913, 934, 1178
AluI AGCT 5 cut(s) 285, 827, 913, 934, 1178
Alw21I GWGCWC 2 cut(s) 287, 384
Alw26I GTCTC 1 cut(s) 180
Alw44I GTGCAC 1 cut(s) 380
AlwI GGATC 3 cut(s) 464, 473, 590
Ama87I CYCGRG 1 cut(s) 714
Aor13HI TCCGGA 1 cut(s) 804
AoxI GGCC 4 cut(s) 540, 664, 737, 1006
ApaLI GTGCAC 1 cut(s) 380
ApeKI GCWGC 5 cut(s) 18, 62, 827, 878, 1133
ApoI RAATTY 5 cut(s) 269, 416, 440, 563, 764
AspLEI GCGC 3 cut(s) 52, 205, 982
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 3 cut(s) 52, 338, 596
AvaI CYCGRG 1 cut(s) 714
AvaII GGWCC 1 cut(s) 488
AxyI CCTNAGG 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 739
BanII GRGCYC 1 cut(s) 287
BauI CACGAG 1 cut(s) 536
BbsI GAAGAC 2 cut(s) 110, 564
Bbv12I GWGCWC 2 cut(s) 287, 384
BbvI GCAGC 5 cut(s) 30, 49, 814, 865, 1120
BccI CCATC 9 cut(s) 229, 317, 443, 499, 957, 995, 1091, 1094, 1200
BceAI ACGGC 1 cut(s) 993
BciT130I CCWGG 1 cut(s) 954
BciVI GTATCC 1 cut(s) 1025
BclI TGATCA 1 cut(s) 790
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 3 cut(s) 66, 662, 687
BfmI CTRYAG 1 cut(s) 831
BfoI RGCGCY 2 cut(s) 53, 206
BfuI GTATCC 1 cut(s) 1025
BisI GCNGC 6 cut(s) 19, 63, 543, 828, 879, 1134
BlsI GCNGC 6 cut(s) 20, 64, 544, 829, 880, 1135
BmcAI AGTACT 1 cut(s) 685
Bme1390I CCNGG 1 cut(s) 954
Bme18I GGWCC 1 cut(s) 488
BmeT110I CYCGRG 1 cut(s) 714
BmgT120I GGNCC 1 cut(s) 488
BmrFI CCNGG 1 cut(s) 954
BmsI GCATC 3 cut(s) 33, 105, 810
BpiI GAAGAC 2 cut(s) 110, 564
Bpu10I CCTNAGC 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 1104
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 804
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 1129
Bse1I ACTGG 2 cut(s) 1109, 1204
Bse21I CCTNAGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 993
Bse8I GATNNNNATC 1 cut(s) 1104
BseAI TCCGGA 1 cut(s) 804
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 7 cut(s) 418, 454, 491, 549, 801, 949, 1234
BseJI GATNNNNATC 1 cut(s) 1104
BseLI CCNNNNNNNGG 2 cut(s) 28, 1129
BseMI GCAATG 1 cut(s) 993
BseMII CTCAG 5 cut(s) 171, 177, 279, 288, 1143
BseNI ACTGG 2 cut(s) 1109, 1204
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 5 cut(s) 30, 49, 814, 865, 1120
Bsh1236I CGCG 2 cut(s) 38, 1060
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 4 cut(s) 542, 666, 739, 1008
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 287, 384
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 2 cut(s) 15, 805
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 28, 1129
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 4 cut(s) 542, 666, 739, 1008
BsoBI CYCGRG 1 cut(s) 714
Bsp1286I GDGCHC 2 cut(s) 287, 384
Bsp13I TCCGGA 1 cut(s) 804
Bsp143I GATC 8 cut(s) 139, 166, 469, 478, 595, 672, 790, 1036
BspACI CCGC 4 cut(s) 38, 150, 543, 1136
BspANI GGCC 4 cut(s) 542, 666, 739, 1008
BspCNI CTCAG 5 cut(s) 172, 178, 280, 289, 1144
BspEI TCCGGA 1 cut(s) 804
BspFNI CGCG 2 cut(s) 38, 1060
BspHI TCATGA 2 cut(s) 793, 1259
BspPI GGATC 3 cut(s) 464, 473, 590
BsrDI GCAATG 1 cut(s) 993
BsrI ACTGG 2 cut(s) 1109, 1204
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 8 cut(s) 139, 166, 469, 478, 595, 672, 790, 1036
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 7 cut(s) 109, 395, 488, 515, 639, 776, 1252
Bst6I CTCTTC 2 cut(s) 606, 714
BstC8I GCNNGC 4 cut(s) 23, 48, 825, 984
BstDEI CTNAG 6 cut(s) 155, 180, 186, 288, 297, 1152
BstF5I GGATG 7 cut(s) 418, 454, 491, 549, 801, 949, 1234
BstFNI CGCG 2 cut(s) 38, 1060
BstH2I RGCGCY 2 cut(s) 53, 206
BstHHI GCGC 3 cut(s) 52, 205, 982
BstKTI GATC 8 cut(s) 142, 169, 472, 481, 598, 675, 793, 1039
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 8 cut(s) 139, 166, 469, 478, 595, 672, 790, 1036
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 4 cut(s) 124, 282, 931, 1051
BstNI CCWGG 1 cut(s) 954
BstNSI RCATGY 2 cut(s) 244, 986
BstSCI CCNGG 1 cut(s) 952
BstSFI CTRYAG 1 cut(s) 831
BstSLI GKGCMC 1 cut(s) 384
BstUI CGCG 2 cut(s) 38, 1060
BstV1I GCAGC 5 cut(s) 30, 49, 814, 865, 1120
BstV2I GAAGAC 2 cut(s) 110, 564
Bsu36I CCTNAGG 1 cut(s) 186
BsuI GTATCC 1 cut(s) 1025
BsuRI GGCC 4 cut(s) 542, 666, 739, 1008
BtsCI GGATG 7 cut(s) 418, 454, 491, 549, 801, 949, 1234
BtsIMutI CAGTG 4 cut(s) 114, 474, 511, 1248
Cac8I GCNNGC 4 cut(s) 23, 48, 825, 984
CciI TCATGA 2 cut(s) 793, 1259
CfoI GCGC 3 cut(s) 52, 205, 982
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 3 cut(s) 7, 226, 684
CviAII CATG 9 cut(s) 241, 352, 385, 699, 794, 839, 860, 983, 1260
CviQI GTAC 3 cut(s) 7, 226, 684
DdeI CTNAG 6 cut(s) 155, 180, 186, 288, 297, 1152
DpnI GATC 8 cut(s) 141, 168, 471, 480, 597, 674, 792, 1038
DpnII GATC 8 cut(s) 139, 166, 469, 478, 595, 672, 790, 1036
DraI TTTAAA 1 cut(s) 646
DrdI GACNNNNNNGTC 1 cut(s) 150
DseDI GACNNNNNNGTC 1 cut(s) 150
EaeI YGGCCR 2 cut(s) 737, 1006
Eam1104I CTCTTC 2 cut(s) 606, 714
EarI CTCTTC 2 cut(s) 606, 714
Ecl136II GAGCTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 287
Eco32I GATATC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 488
Eco53kI GAGCTC 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 952
EcoRV GATATC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 9 cut(s) 244, 355, 388, 702, 797, 842, 863, 986, 1263
FaqI GGGAC 1 cut(s) 44
FatI CATG 9 cut(s) 240, 351, 384, 698, 793, 838, 859, 982, 1259
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 6 cut(s) 19, 63, 543, 828, 879, 1134
FokI GGATG 7 cut(s) 425, 461, 478, 536, 788, 936, 1221
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 6 cut(s) 19, 63, 543, 828, 879, 1134
FspAI RTGCGCAY 1 cut(s) 981
FspBI CTAG 3 cut(s) 66, 662, 687
FspI TGCGCA 1 cut(s) 981
GlaI GCGC 3 cut(s) 51, 204, 981
GluI GCNGC 6 cut(s) 19, 63, 543, 828, 879, 1134
HaeII RGCGCY 2 cut(s) 53, 206
HaeIII GGCC 4 cut(s) 542, 666, 739, 1008
HapII CCGG 2 cut(s) 15, 805
HhaI GCGC 3 cut(s) 52, 205, 982
Hin1II CATG 9 cut(s) 244, 355, 388, 702, 797, 842, 863, 986, 1263
Hin6I GCGC 3 cut(s) 50, 203, 980
HinP1I GCGC 3 cut(s) 50, 203, 980
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 6 cut(s) 329, 425, 893, 903, 1105, 1157
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 2 cut(s) 15, 805
HphI GGTGA 3 cut(s) 52, 338, 596
Hpy166II GTNNAC 3 cut(s) 382, 391, 772
Hpy188I TCNGA 6 cut(s) 258, 289, 430, 1153, 1162, 1223
Hpy188III TCNNGA 8 cut(s) 179, 482, 536, 613, 716, 794, 805, 1260
Hpy8I GTNNAC 3 cut(s) 382, 391, 772
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 205, 1248
HpyCH4III ACNGT 7 cut(s) 109, 395, 488, 515, 639, 776, 1252
HpyCH4IV ACGT 1 cut(s) 1165
HpyCH4V TGCA 7 cut(s) 118, 244, 276, 382, 823, 986, 1045
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 282, 931, 1051
HpyF3I CTNAG 6 cut(s) 155, 180, 186, 288, 297, 1152
HpySE526I ACGT 1 cut(s) 1165
Hsp92II CATG 9 cut(s) 244, 355, 388, 702, 797, 842, 863, 986, 1263
HspAI GCGC 3 cut(s) 50, 203, 980
Kpn2I TCCGGA 1 cut(s) 804
Ksp22I TGATCA 1 cut(s) 790
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 8 cut(s) 139, 166, 469, 478, 595, 672, 790, 1036
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 5 cut(s) 30, 49, 814, 865, 1120
LweI GCATC 3 cut(s) 33, 105, 810
MaeI CTAG 3 cut(s) 66, 662, 687
MaeII ACGT 1 cut(s) 1165
MaeIII GTNAC 2 cut(s) 109, 395
MalI GATC 8 cut(s) 141, 168, 471, 480, 597, 674, 792, 1038
MboI GATC 8 cut(s) 139, 166, 469, 478, 595, 672, 790, 1036
MboII GAAGA 7 cut(s) 115, 449, 569, 593, 731, 743, 1140
MhlI GDGCHC 2 cut(s) 287, 384
MlsI TGGCCA 1 cut(s) 739
MluI ACGCGT 1 cut(s) 1058
MluNI TGGCCA 1 cut(s) 739
MmeI TCCRAC 3 cut(s) 282, 844, 1009
Mox20I TGGCCA 1 cut(s) 739
Mph1103I ATGCAT 1 cut(s) 246
MroI TCCGGA 1 cut(s) 804
MscI TGGCCA 1 cut(s) 739
MseI TTAA 5 cut(s) 390, 585, 645, 851, 966
MslI CAYNNNNRTG 1 cut(s) 516
Msp20I TGGCCA 1 cut(s) 739
MspI CCGG 2 cut(s) 15, 805
MspR9I CCNGG 1 cut(s) 954
MvaI CCWGG 1 cut(s) 954
MvnI CGCG 2 cut(s) 38, 1060
MwoI GCNNNNNNNGC 4 cut(s) 124, 282, 931, 1051
NdeII GATC 8 cut(s) 139, 166, 469, 478, 595, 672, 790, 1036
NlaIII CATG 9 cut(s) 244, 355, 388, 702, 797, 842, 863, 986, 1263
NmuCI GTSAC 1 cut(s) 109
NsbI TGCGCA 1 cut(s) 981
NsiI ATGCAT 1 cut(s) 246
NspI RCATGY 2 cut(s) 244, 986
PaeI GCATGC 1 cut(s) 986
PagI TCATGA 2 cut(s) 793, 1259
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PfeI GAWTC 6 cut(s) 329, 425, 893, 903, 1105, 1157
PfoI TCCNGGA 1 cut(s) 952
PkrI GCNGC 6 cut(s) 20, 64, 544, 829, 880, 1135
Ple19I CGATCG 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 952
PspGI CCWGG 1 cut(s) 952
PspPI GGNCC 1 cut(s) 488
PvuI CGATCG 1 cut(s) 169
RsaI GTAC 3 cut(s) 8, 227, 685
RsaNI GTAC 3 cut(s) 7, 226, 684
RseI CAYNNNNRTG 1 cut(s) 516
SacI GAGCTC 1 cut(s) 287
SaqAI TTAA 5 cut(s) 390, 585, 645, 851, 966
SatI GCNGC 6 cut(s) 19, 63, 543, 828, 879, 1134
Sau3AI GATC 8 cut(s) 139, 166, 469, 478, 595, 672, 790, 1036
Sau96I GGNCC 1 cut(s) 488
ScaI AGTACT 1 cut(s) 685
ScrFI CCNGG 1 cut(s) 954
SduI GDGCHC 2 cut(s) 287, 384
SfaNI GCATC 3 cut(s) 33, 105, 810
SfcI CTRYAG 1 cut(s) 831
SinI GGWCC 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 516
SphI GCATGC 1 cut(s) 986
SsiI CCGC 4 cut(s) 38, 150, 543, 1136
SspI AATATT 2 cut(s) 74, 262
SspMI CTAG 3 cut(s) 66, 662, 687
SstI GAGCTC 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 952
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 7 cut(s) 109, 395, 488, 515, 639, 776, 1252
TaiI ACGT 1 cut(s) 1168
TaqI TCGA 6 cut(s) 142, 198, 348, 555, 708, 1075
TatI WGTACW 2 cut(s) 225, 683
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 6 cut(s) 329, 425, 893, 903, 1105, 1157
Tru1I TTAA 5 cut(s) 390, 585, 645, 851, 966
Tru9I TTAA 5 cut(s) 390, 585, 645, 851, 966
TscAI CASTG 4 cut(s) 114, 481, 518, 1255
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 5 cut(s) 18, 62, 827, 878, 1133
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 5 cut(s) 17, 224, 429, 538, 1248
TspRI CASTG 4 cut(s) 114, 481, 518, 1255
VneI GTGCAC 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 5 cut(s) 269, 416, 440, 563, 764
XceI RCATGY 2 cut(s) 244, 986
XspI CTAG 3 cut(s) 66, 662, 687
ZrmI AGTACT 1 cut(s) 685
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.