Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

924409 .. 926173

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G008800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATTGCGGATTCCAAATCGTATATTGTGGGGGGTCGCTTTCCTTTGCAGCCGCCCAACCTTGAGGTTTTTGCGTGTGAACCCAATCCTGATGATCCAGAGGGCCTCTGCAAGAGTAACCTTCCCGCATTGTCTGGTCCTAAGTTGGATCCATTCGTGTTCACCATCGAGGGCAAAATTTATGTGTTGGCCACAGAGTATCGAGGAGGGCCCGTCGAAGAAAAATCTCTAGCCCTTTTTGAGGTTTTCAATCCTATATCTGGGTCATGGAAAGTTCTTCCAAATCCCCCATTCATCTTTGGTCATCGTGGATTCCCTAATATTTTTGCCAACGACTGGCACGTTTGGGGCCACAAGATCTTGATTTCGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Kelch_1 NOP5NT Nop

Protein Analysis

125

Amino Acids

13.77

Weight (kDa)

5.52

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	336
AciI	CCGC	3 cut(s)	8, 53, 126
AclWI	GGATC	3 cut(s)	89, 143, 156
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	241, 260, 336
AgsI	TTSAA	1 cut(s)	250
AlwI	GGATC	3 cut(s)	89, 143, 156
AoxI	GGCC	4 cut(s)	103, 189, 209, 349
ApaI	GGGCCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	177
AspS9I	GGNCC	5 cut(s)	103, 137, 209, 210, 349
AsuHPI	GGTGA	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	191
BamHI	GGATCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	230
BglII	AGATCT	1 cut(s)	357
BisI	GCNGC	2 cut(s)	50, 53
BlsI	GCNGC	2 cut(s)	51, 54
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	5 cut(s)	103, 137, 209, 210, 349
BmiI	GGNNCC	3 cut(s)	150, 211, 350
Bpu14I	TTCGAA	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 260, 336
Bse1I	ACTGG	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	241, 260, 336
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	4 cut(s)	105, 191, 211, 351
BslI	CCNNNNNNNGG	3 cut(s)	241, 260, 336
BsnI	GGCC	4 cut(s)	105, 191, 211, 351
Bsp119I	TTCGAA	1 cut(s)	368
Bsp120I	GGGCCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	94, 148, 357
BspACI	CCGC	3 cut(s)	8, 53, 126
BspANI	GGCC	4 cut(s)	105, 191, 211, 351
BspLI	GGNNCC	3 cut(s)	150, 211, 350
BspPI	GGATC	3 cut(s)	89, 143, 156
BspT104I	TTCGAA	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	341
BssMI	GATC	3 cut(s)	94, 148, 357
BstBI	TTCGAA	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstKTI	GATC	3 cut(s)	97, 151, 360
BstMBI	GATC	3 cut(s)	94, 148, 357
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	2 cut(s)	148, 357
BstYI	RGATCY	2 cut(s)	148, 357
BsuRI	GGCC	4 cut(s)	105, 191, 211, 351
Cfr13I	GGNCC	5 cut(s)	103, 137, 209, 210, 349
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	6 cut(s)	52, 105, 191, 211, 233, 351
CviKI_1	RGCY	6 cut(s)	52, 105, 191, 211, 233, 351
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	3 cut(s)	96, 150, 359
DpnII	GATC	3 cut(s)	94, 148, 357
EaeI	YGGCCR	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	2 cut(s)	103, 209
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	1 cut(s)	270
FaiI	YATR	4 cut(s)	24, 183, 257, 268
FatI	CATG	1 cut(s)	266
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	50, 53
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	50, 53
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	2 cut(s)	50, 53
HaeIII	GGCC	4 cut(s)	105, 191, 211, 351
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	2 cut(s)	11, 312
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	80, 162
Hpy188III	TCNNGA	3 cut(s)	89, 98, 361
Hpy8I	GTNNAC	2 cut(s)	80, 162
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	49, 111
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	94, 148, 357
LpnPI	CCDG	5 cut(s)	102, 111, 120, 246, 322
Lsp1109I	GCAGC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	96, 150, 359
MboI	GATC	3 cut(s)	94, 148, 357
MboII	GAAGA	2 cut(s)	230, 269
MflI	RGATCY	2 cut(s)	148, 357
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	58, 94, 116, 163, 197, 200, 235
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	191
NdeII	GATC	3 cut(s)	94, 148, 357
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	3 cut(s)	150, 211, 350
NspV	TTCGAA	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	11, 312
PflMI	CCANNNNNTGG	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	51, 54
PspN4I	GGNNCC	3 cut(s)	150, 211, 350
PspOMI	GGGCCC	1 cut(s)	209
PspPI	GGNCC	5 cut(s)	103, 137, 209, 210, 349
PsuI	RGATCY	2 cut(s)	148, 357
SatI	GCNGC	2 cut(s)	50, 53
Sau3AI	GATC	3 cut(s)	94, 148, 357
Sau96I	GGNCC	5 cut(s)	103, 137, 209, 210, 349
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	5 cut(s)	63, 69, 123, 246, 345
SfuI	TTCGAA	1 cut(s)	368
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	3 cut(s)	8, 53, 126
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	230
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	4 cut(s)	168, 202, 216, 368
TasI	AATT	1 cut(s)	177
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	11, 312
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	177
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.