Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

30254516 .. 30256565

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30821.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGATGCAAGCACCAGCTTCAAAGAAGGATTGGTTTTTGTACCTGATGATGGATGATCGAATATACCGTCTAAATATTGATGAATTCTGCAAAAAGAACTCTCCAAAGCCTCAGTTTGAAGTTGTTCATGATTACTATCTTGATGAAGGCTATATTCCTAACACAACTAGTCCGCTTCCTAATACAACTCTTCCGCAGCGAATGCAACCTATTGTTGTGGGTTCCCAAGTGTACATGCTCGGGAGTACTACTCACTCTGAAAACAATGGTTCTGATCATGATGACGATTCCGGTGAAGATGCTGAAGATGATTCCCGTACTAACCGTAAAAGCGTACGTTGGCAATGGTATGATAATCGTGTGGCCAATTTAGATGTTTTTTCCTTTGATCCTGATGCTTCAGAGGGTCCAGCGATCAGGAGGAACCGAATTCAGGAGGAGGATAGAGGGAGATTGATGAATACCAAATCAAACCCAATGAAAACCAACGCTGCTGATGTCGAACTCACAATTACCTCTCCTTCTCTCAACTCTCGCGGCAACACTTTAGTTGTTCGGAGGCAAGCCATTGAATCATTGAATCCGCCTAACCAATCAAGGCCGACTCAGTTGCAGCACCGCCTCGCGCCTTTTGAGTCTCAAGGCACGCCCGAGGCACTTTCCACTTACACTTCTCGGCGGATTTTCTACCAATTTGACACTCACCAAGAGAAATGGGAAGAATGGCCAGAGGAAAAGGAAGACGAACAGAAGAAGAACCAGTTTGTGTTTAAAGCTGTTGTGGAATTTGAGGGGTTTTTAATTGGTGTAAAACGCAACGATAATTGTTTTTACGACCAGTTATTCGAGGAGCTCAGTGTTTATCAGTTGGATCCGAATGGAATCCCCAAGCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

301

Amino Acids

34.86

Weight (kDa)

4.95

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	540, 629
AciI	CCGC	6 cut(s)	176, 197, 540, 587, 622, 682
AclWI	GGATC	3 cut(s)	386, 869, 882
AcoI	YGGCCR	2 cut(s)	366, 728
AcsI	RAATTY	3 cut(s)	86, 432, 788
AcuI	CTGAAG	2 cut(s)	327, 387
AfaI	GTAC	5 cut(s)	44, 236, 250, 322, 339
AfiI	CCNNNNNNNGG	2 cut(s)	52, 436
AgsI	TTSAA	4 cut(s)	24, 122, 575, 583
AhlI	ACTAGT	1 cut(s)	170
AluBI	AGCT	4 cut(s)	20, 779, 856, 895
AluI	AGCT	4 cut(s)	20, 779, 856, 895
Alw21I	GWGCWC	1 cut(s)	858
Alw26I	GTCTC	1 cut(s)	645
AlwI	GGATC	3 cut(s)	386, 869, 882
Ama87I	CYCGRG	2 cut(s)	242, 653
AoxI	GGCC	3 cut(s)	366, 602, 728
ApeKI	GCWGC	3 cut(s)	199, 494, 616
ApoI	RAATTY	3 cut(s)	86, 432, 788
ArsI	GACNNNNNNTTYG	4 cut(s)	55, 87, 830, 862
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	308, 698
AvaI	CYCGRG	2 cut(s)	242, 653
AvaII	GGWCC	1 cut(s)	410
BalI	TGGCCA	2 cut(s)	368, 730
BamHI	GGATCC	1 cut(s)	874
BanII	GRGCYC	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	1 cut(s)	858
BbvI	GCAGC	3 cut(s)	211, 481, 628
BccI	CCATC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	645
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	4 cut(s)	200, 495, 541, 617
BlsI	GCNGC	4 cut(s)	201, 496, 542, 618
BmcAI	AGTACT	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	2 cut(s)	242, 653
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	4 cut(s)	226, 411, 428, 876
BmsI	GCATC	2 cut(s)	292, 388
BpiI	GAAGAC	1 cut(s)	750
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
BpuEI	CTTGAG	1 cut(s)	627
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	654
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 436
Bse1I	ACTGG	2 cut(s)	763, 841
Bse3DI	GCAATG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	52, 436
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	3 cut(s)	128, 623, 871
BseNI	ACTGG	2 cut(s)	763, 841
BseRI	GAGGAG	2 cut(s)	455, 866
BseXI	GCAGC	3 cut(s)	211, 481, 628
Bsh1236I	CGCG	2 cut(s)	540, 629
BshFI	GGCC	3 cut(s)	368, 604, 730
BsiHKAI	GWGCWC	1 cut(s)	858
BsiHKCI	CYCGRG	2 cut(s)	242, 653
BsiSI	CCGG	1 cut(s)	294
BsiWI	CGTACG	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	52, 436
BsmAI	GTCTC	1 cut(s)	645
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	368, 604, 730
BsoBI	CYCGRG	2 cut(s)	242, 653
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	5 cut(s)	58, 277, 391, 417, 874
BspACI	CCGC	6 cut(s)	176, 197, 540, 587, 622, 682
BspANI	GGCC	3 cut(s)	368, 604, 730
BspCNI	CTCAG	3 cut(s)	127, 622, 870
BspFNI	CGCG	2 cut(s)	540, 629
BspHI	TCATGA	2 cut(s)	130, 280
BspLI	GGNNCC	4 cut(s)	226, 411, 428, 876
BspPI	GGATC	3 cut(s)	386, 869, 882
BsrDI	GCAATG	1 cut(s)	353
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	763, 841
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	5 cut(s)	58, 277, 391, 417, 874
Bst4CI	ACNGT	2 cut(s)	71, 329
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	12, 567, 650
BstDEI	CTNAG	3 cut(s)	114, 609, 857
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	2 cut(s)	540, 629
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	5 cut(s)	61, 280, 394, 420, 877
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	5 cut(s)	58, 277, 391, 417, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 205
BstNSI	RCATGY	1 cut(s)	241
BstUI	CGCG	2 cut(s)	540, 629
BstV1I	GCAGC	3 cut(s)	211, 481, 628
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BsuRI	GGCC	3 cut(s)	368, 604, 730
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	865
Cac8I	GCNNGC	3 cut(s)	12, 567, 650
CciI	TCATGA	2 cut(s)	130, 280
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	5 cut(s)	43, 235, 249, 321, 338
CviAII	CATG	3 cut(s)	131, 238, 281
CviQI	GTAC	5 cut(s)	43, 235, 249, 321, 338
DdeI	CTNAG	3 cut(s)	114, 609, 857
DpnI	GATC	5 cut(s)	60, 279, 393, 419, 876
DpnII	GATC	5 cut(s)	58, 277, 391, 417, 874
DraI	TTTAAA	1 cut(s)	775
EaeI	YGGCCR	2 cut(s)	366, 728
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	2 cut(s)	576, 697
Ecl136II	GAGCTC	1 cut(s)	856
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	856
Eco57I	CTGAAG	2 cut(s)	327, 387
Eco88I	CYCGRG	2 cut(s)	242, 653
EcoICRI	GAGCTC	1 cut(s)	856
EcoRI	GAATTC	2 cut(s)	86, 432
EcoT38I	GRGCYC	1 cut(s)	858
FaeI	CATG	3 cut(s)	134, 241, 284
FaiI	YATR	6 cut(s)	67, 132, 156, 239, 282, 354
FatI	CATG	3 cut(s)	130, 237, 280
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	200, 495, 541, 617
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	4 cut(s)	200, 495, 541, 617
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	4 cut(s)	200, 495, 541, 617
HaeIII	GGCC	3 cut(s)	368, 604, 730
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	3 cut(s)	134, 241, 284
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HinfI	GANTC	7 cut(s)	290, 314, 575, 583, 607, 638, 885
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	308, 698
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	5 cut(s)	262, 277, 406, 561, 879
Hpy188III	TCNNGA	7 cut(s)	131, 143, 244, 281, 395, 421, 437
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	22, 143, 534
HpyCH4III	ACNGT	2 cut(s)	71, 329
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	10, 93, 208, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 205
HpyF3I	CTNAG	3 cut(s)	114, 609, 857
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	134, 241, 284
HspAI	GCGC	1 cut(s)	629
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	58, 277, 391, 417, 874
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	3 cut(s)	211, 481, 628
LweI	GCATC	2 cut(s)	292, 388
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	340
MalI	GATC	5 cut(s)	60, 279, 393, 419, 876
MboI	GATC	5 cut(s)	58, 277, 391, 417, 874
MboII	GAAGA	7 cut(s)	185, 311, 320, 734, 755, 766, 769
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	1 cut(s)	858
MlsI	TGGCCA	2 cut(s)	368, 730
MluCI	AATT	8 cut(s)	86, 370, 432, 513, 695, 788, 804, 826
MluNI	TGGCCA	2 cut(s)	368, 730
MlyI	GAGTC	2 cut(s)	601, 647
MmeI	TCCRAC	1 cut(s)	852
Mox20I	TGGCCA	2 cut(s)	368, 730
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	2 cut(s)	368, 730
MseI	TTAA	2 cut(s)	774, 803
Msp20I	TGGCCA	2 cut(s)	368, 730
MspI	CCGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	210
MvnI	CGCG	2 cut(s)	540, 629
MwoI	GCNNNNNNNGC	2 cut(s)	11, 205
NdeII	GATC	5 cut(s)	58, 277, 391, 417, 874
NlaIII	CATG	3 cut(s)	134, 241, 284
NlaIV	GGNNCC	4 cut(s)	226, 411, 428, 876
NmeAIII	GCCGAG	1 cut(s)	658
NspI	RCATGY	1 cut(s)	241
PagI	TCATGA	2 cut(s)	130, 280
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PctI	GAATGC	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	5 cut(s)	290, 314, 575, 583, 885
Pfl23II	CGTACG	1 cut(s)	337
PkrI	GCNGC	4 cut(s)	201, 496, 542, 618
PleI	GAGTC	2 cut(s)	601, 646
PpsI	GAGTC	2 cut(s)	601, 646
Psp124BI	GAGCTC	1 cut(s)	858
PspLI	CGTACG	1 cut(s)	337
PspN4I	GGNNCC	4 cut(s)	226, 411, 428, 876
PspPI	GGNCC	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	874
RsaI	GTAC	5 cut(s)	44, 236, 250, 322, 339
RsaNI	GTAC	5 cut(s)	43, 235, 249, 321, 338
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	2 cut(s)	774, 803
SatI	GCNGC	4 cut(s)	200, 495, 541, 617
Sau3AI	GATC	5 cut(s)	58, 277, 391, 417, 874
Sau96I	GGNCC	1 cut(s)	410
ScaI	AGTACT	1 cut(s)	250
SchI	GAGTC	2 cut(s)	601, 647
SduI	GDGCHC	1 cut(s)	858
SetI	ASST	8 cut(s)	22, 48, 214, 343, 521, 781, 858, 897
SfaNI	GCATC	2 cut(s)	292, 388
SinI	GGWCC	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	642
SmoI	CTYRAG	1 cut(s)	642
SpeI	ACTAGT	1 cut(s)	170
Sse9I	AATT	8 cut(s)	86, 370, 432, 513, 695, 788, 804, 826
SsiI	CCGC	6 cut(s)	176, 197, 540, 587, 622, 682
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	858
TaaI	ACNGT	2 cut(s)	71, 329
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	3 cut(s)	61, 504, 849
TasI	AATT	8 cut(s)	86, 370, 432, 513, 695, 788, 804, 826
TatI	WGTACW	2 cut(s)	234, 248
TauI	GCSGC	1 cut(s)	543
TfiI	GAWTC	5 cut(s)	290, 314, 575, 583, 885
Tru1I	TTAA	2 cut(s)	774, 803
Tru9I	TTAA	2 cut(s)	774, 803
TscAI	CASTG	1 cut(s)	865
TseI	GCWGC	3 cut(s)	199, 494, 616
TspDTI	ATGAA	5 cut(s)	99, 119, 162, 476, 497
TspRI	CASTG	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	3 cut(s)	86, 432, 788
XceI	RCATGY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	171
ZrmI	AGTACT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.